3300029644: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029644
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128792 | Gp0224277 | Ga0206083
• Sample Name: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8298031
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 33.3049
  • Long. (^o): -116.2547
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013355	Metagenome / Metatranscriptome	272	Y
F016972	Metagenome / Metatranscriptome	243	Y
F019791	Metagenome / Metatranscriptome	227	Y
F021083	Metagenome / Metatranscriptome	220	Y
F034033	Metagenome / Metatranscriptome	175	N
F060086	Metagenome / Metatranscriptome	133	Y
F061584	Metagenome / Metatranscriptome	131	Y
F066650	Metagenome / Metatranscriptome	126	Y
F086426	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0206083_100417	Not Available	967
Ga0206083_100509	Not Available	913
Ga0206083_100583	All Organisms → cellular organisms → Bacteria	878
Ga0206083_100658	Not Available	842
Ga0206083_102110	Not Available	590
Ga0206083_102603	Not Available	553
Ga0206083_102740	Not Available	545
Ga0206083_103259	Not Available	518
Ga0206083_103617	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206083_100417	Ga0206083_1004171	F066650	GQENVSRMDSPHQGEPRDPHGAKPQHRGGSGSQSNASPPSEGSSSQS
Ga0206083_100509	Ga0206083_1005091	F061584	CLTRRFPFGGSRTRCGIPRPRRRAAVTSHEVGRSTECCERRSCKRIGLLAPSVTSLFPASLSGVTSPPAPVLLRVRVHPPMSFTSPTEYEPLRTCPARFRAKRLPWGFLPHRGTSSQSPLPSELPMSRPHVPPSAFLTPSTVCSSVRLAGLFRPATTSGIHLPGVISRCQAASPRR
Ga0206083_100583	Ga0206083_1005831	F021083	TRSTNLGPPLEVAMVKKGQLEVSKADSPRQGEDRDPNAPKIKRKGGSESQRRARGQHEGSSSEK
Ga0206083_100658	Ga0206083_1006581	F060086	DPFELDSNLLLSSGRHGEDRKRQYLWYDHETPLLDDLADLLYQSGIALIGIV
Ga0206083_102110	Ga0206083_1021102	F021083	MVKKGQLEVSKMDSPKQGEQRNPNAPKIKRKGGSQSQTRSRPQSEGSSSKG
Ga0206083_102538	Ga0206083_1025381	F086426	LMPAKGGQARKPAEHPPRPALGGVARSLAKLTSKLNGLDIRPAGAERQKLVDALRGLAEAACRLDIPVKVAVGVKERKPVVTKRSDRVARA
Ga0206083_102603	Ga0206083_1026031	F016972	PLTDEIPVVNLYLTIYDLYTFSFGTKTSRYGPYELGYRRATITFTIXR
Ga0206083_102740	Ga0206083_1027402	F019791	MYWHNTTTRTSERVAAPSDDDEAVGMLAGHPDSARFVTEYADLRRAGEPVERAMVLVGHEERMSQHDRAPMRLAWRERPSRRARPSAEGYEFLLAQRLREMGGNDHPKGRRSRARV
Ga0206083_103259	Ga0206083_1032591	F034033	QTPLTSEDTNILIAHILDWLYALERQSGLLPQTTEELKYCLLQAELFKLSLRVDPKVIFYHLLFNRVILIDGEFNLSKNVQYDPAQPLLGFVPEDTDKEKISRHFTQALNSTINWVLAVKEIPATCEEFYLEMEKFCVFKCEATWCQILEWLVERQYVVVHGFGGNLEYALK
Ga0206083_103617	Ga0206083_1036171	F013355	TTTDGGVEKVATTMMTKTYFEDLGRIAESNAKSAQQSARIATEYWVASRERNNKVAQDITRTITESMKHQTKANEDLRSRIFVILEERDEAHKRFFEQWAQAFSSVPFEHTRQVMREAHKKTASLK