3300029521: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012168-57

Overview

Basic Information

• IMG/M Taxon OID: 3300029521
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283456 | Ga0244833
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012168-57
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 182673898
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F051936	Metagenome	143	N
F056309	Metagenome	137	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244833_100513	All Organisms → cellular organisms → Bacteria	49289
Ga0244833_102173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	13954
Ga0244833_102870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	10083
Ga0244833_102948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	9783
Ga0244833_103843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7244
Ga0244833_108588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2800

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244833_100513	Ga0244833_10051311	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244833_100513	Ga0244833_10051312	F060985	MSNIDEKAKNNFTIEMKIFENYEKVKYEIIKVIDFLRHAGTNLGMCKIFDNQNHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPYRIKVLRLALKDLERIKEEYGKD
Ga0244833_100513	Ga0244833_10051327	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETV
Ga0244833_102173	Ga0244833_1021731	F051936	FPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK
Ga0244833_102870	Ga0244833_1028701	F056309	SLSVVPLFLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0244833_102948	Ga0244833_1029489	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPN
Ga0244833_103843	Ga0244833_1038435	F029444	MEVSEQLTGFELEALLFWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0244833_108588	Ga0244833_1085881	F070093	SNFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNLLQNIHRM