3300029511: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005376-42

Overview

Basic Information

• IMG/M Taxon OID: 3300029511
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283432 | Ga0244809
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005376-42
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 139124327
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F056309	Metagenome	137	N
F067720	Metagenome	125	Y
F070093	Metagenome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244809_100004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	359436
Ga0244809_100205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	91045
Ga0244809_100535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	43460
Ga0244809_100987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	21798
Ga0244809_101311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15439
Ga0244809_102631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	6931
Ga0244809_122366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	777

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244809_100004	Ga0244809_100004167	F067720	MESTTYEHFVDTNKMYAAQEQFRDITKLVTKRHHFAVLGNMVRNAGQLPQPFWLGAARGGGSCSTARCAARA
Ga0244809_100205	Ga0244809_10020538	F056309	XXXSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKN
Ga0244809_100535	Ga0244809_10053515	F056309	MWNAVRNTKRVRSTVKGTKRTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0244809_100987	Ga0244809_1009871	F070093	LAEFYPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPNCATVVSFQ
Ga0244809_101311	Ga0244809_1013111	F056309	STVKGTKRTCLRRTPSLSVVLLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0244809_102631	Ga0244809_1026311	F070093	VCRVSNFESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPNLI
Ga0244809_122366	Ga0244809_1223661	F051936	TGQVLFFPLALRGKAFGFSVLQEHAVMTPIISIFFVMLIIRYLSIHISIKK