3300029431: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029431
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282919 | Ga0243758
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 217984421
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F087336	Metagenome	110	N
F089053	Metagenome	109	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243758_1001231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	27974
Ga0243758_1002304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	16013
Ga0243758_1002407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15405
Ga0243758_1004038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9072
Ga0243758_1005731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	5933
Ga0243758_1012832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2176
Ga0243758_1018040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1484
Ga0243758_1023603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1128
Ga0243758_1025650	All Organisms → cellular organisms → Bacteria	1043
Ga0243758_1028962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	928

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243758_1001231	Ga0243758_100123132	F056309	KGTKRTCLRRTPSLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKN
Ga0243758_1002304	Ga0243758_10023041	F056309	PSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0243758_1002331	Ga0243758_10023311	F101356	RFMDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243758_1002407	Ga0243758_10024071	F056309	KRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243758_1004038	Ga0243758_100403813	F089053	CVSKMEGPRPDKFAFGVRIGRVVDGCRPIKGCITKRIHGSANGQPELSAGREVEVKNWRLHL
Ga0243758_1005731	Ga0243758_10057311	F059106	LQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243758_1012832	Ga0243758_10128324	F032286	MVKWVCQIVTPVRHRALIFDVRLFTGNTAXXXXDDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL
Ga0243758_1018040	Ga0243758_10180403	F056309	TCLRRTPSLSVVPLFLGASDSLSVSYGMEPEQEALSTVSFKD
Ga0243758_1023603	Ga0243758_10236032	F047126	MTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSELNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0243758_1025650	Ga0243758_10256501	F087336	LSDTPISSSMHCLLRGMVAELEQVPKAFRAADNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0243758_1028962	Ga0243758_10289621	F070093	ESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPKQI