3300029430: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_4_27_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029430
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283083 | Ga0243922
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_4_27_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 240452152
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243922_100710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques	48809
Ga0243922_100885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	40565
Ga0243922_101424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	27612
Ga0243922_101744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	22718
Ga0243922_107383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea formicigenerans	4675
Ga0243922_107638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea	4492
Ga0243922_107896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4321
Ga0243922_109663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3443

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243922_100710	Ga0243922_1007101	F059106	LQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243922_100885	Ga0243922_1008851	F056309	TKRTCLRRTPSLNVVPLLLGDSDSLSVSYGMEPEQEALSIVFFKD
Ga0243922_101424	Ga0243922_10142413	F089053	MILCRAKRALFQFGSRNGCVVGGCRPAKGYIKKWVHESANGQPELSTAEEVNVKNMEVFL
Ga0243922_101744	Ga0243922_1017441	F070093	RVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0243922_107383	Ga0243922_1073831	F059106	MHASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243922_107638	Ga0243922_1076384	F056309	MCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFMD
Ga0243922_107896	Ga0243922_1078966	F059106	MHAIVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0243922_109663	Ga0243922_1096631	F055715	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNERFCDKINELIQVETAKILDN