3300029361: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 046_3_10_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029361
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282976 | Ga0243815
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 046_3_10_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252330196
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F081354	Metagenome	114	Y
F088914	Metagenome	109	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243815_1001411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	23641
Ga0243815_1001696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	19572
Ga0243815_1002226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	15373
Ga0243815_1007354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5237
Ga0243815_1007522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5134
Ga0243815_1012421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3150
Ga0243815_1015559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2499
Ga0243815_1021975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1731
Ga0243815_1028623	Not Available	1289

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243815_1001411	Ga0243815_10014111	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMY
Ga0243815_1001696	Ga0243815_10016961	F056309	TKRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243815_1002226	Ga0243815_10022265	F051936	MKQEGTGLCPVLPLALRGKAFGFSVLQEHAVMTLVISIFFTIPIIRYLSIHISIKK
Ga0243815_1007354	Ga0243815_10073544	F071325	HKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFRYFFELPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243815_1007522	Ga0243815_10075225	F088914	VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK
Ga0243815_1012421	Ga0243815_10124215	F071325	KFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243815_1015559	Ga0243815_10155594	F059106	LLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0243815_1021975	Ga0243815_10219753	F081354	VPFLSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL
Ga0243815_1028623	Ga0243815_10286231	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPN