3300029335: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029335
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282923 | Ga0243762
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 234717045
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F070093	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243762_100846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	42512
Ga0243762_101159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	34383
Ga0243762_102048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21397
Ga0243762_102254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	19515
Ga0243762_102804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	15816
Ga0243762_107136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5671
Ga0243762_108922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4399
Ga0243762_110130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3755
Ga0243762_110495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3602
Ga0243762_112016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3047
Ga0243762_115822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2148
Ga0243762_121968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1392

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243762_100846	Ga0243762_10084649	F056309	MWNAVRNTKRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGM
Ga0243762_101159	Ga0243762_10115910	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0243762_102048	Ga0243762_10204822	F032286	MVKWVCQIVTPVRHRALIFDVRLFTGNTADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL
Ga0243762_102254	Ga0243762_1022541	F059106	IRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0243762_102804	Ga0243762_10280418	F056309	SLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKN
Ga0243762_107136	Ga0243762_1071362	F076190	VRTAGGSITISAKNVFTIASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYSYFQREPL
Ga0243762_108922	Ga0243762_1089221	F056309	RTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIASFKD
Ga0243762_110130	Ga0243762_1101301	F070093	SNFESLLLAEFYPFRIDPPMEPEQERLFKLYSGSGIHSLPELNPN
Ga0243762_110495	Ga0243762_1104954	F056309	LRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKDREDASQLIN
Ga0243762_112016	Ga0243762_1120163	F056309	STVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0243762_115822	Ga0243762_1158221	F070093	VCRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPKSTQTLS
Ga0243762_121968	Ga0243762_1219681	F074899	DPHGEMSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSTEKP