3300029234: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011691-140

Overview

Basic Information

• IMG/M Taxon OID: 3300029234
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192963 | Ga0168698
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011691-140
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 176414892
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F052660	Metagenome	142	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F073656	Metagenome	120	N
F076189	Metagenome	118	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168698_100496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	52602
Ga0168698_100542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	49563
Ga0168698_101650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	18899
Ga0168698_102024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	15323
Ga0168698_103019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	10190
Ga0168698_104404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6739
Ga0168698_104504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6562
Ga0168698_104680	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	6282
Ga0168698_104910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5926
Ga0168698_105549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5100
Ga0168698_108995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2871
Ga0168698_110857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2274
Ga0168698_115502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1489
Ga0168698_126544	Not Available	781

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168698_100496	Ga0168698_1004967	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGRFLHSGILMGIVLPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS
Ga0168698_100542	Ga0168698_10054212	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLYAIQSAQKQLKMLCNFHENTFRLLIFYTNYAIL
Ga0168698_101650	Ga0168698_1016507	F089053	LFQFGSRNGCVVGGCRPAKGYIKKWVHESANGQPELSTAEEVNVKNMEAFL
Ga0168698_102024	Ga0168698_1020243	F062845	MKKTPFILHEKFRSDDNEQRKEDFQKEFERYIIDGLLNAVPSRSCA
Ga0168698_103019	Ga0168698_1030191	F056309	LRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKDREAASQLIN
Ga0168698_104404	Ga0168698_1044048	F071325	KFQYCSIFKVLLALLSDSSTIISKVVLFVKHFFDIFLSLPNAFSKAFHPHAVRFPAAFLLIHRFYLAFEELLSCATAYL
Ga0168698_104504	Ga0168698_1045043	F044554	VLAGRFIPVSCASIARLFPCRTEIARCFTLDFAISRYLFLSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168698_104680	Ga0168698_1046803	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0168698_104910	Ga0168698_1049101	F070093	RIDPPMEPEQERLSKLYSGSGIHSLTELNPNFMEANQ
Ga0168698_105549	Ga0168698_1055496	F042936	MGRGGGKGLVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0168698_108995	Ga0168698_1089955	F070093	RIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0168698_110857	Ga0168698_1108574	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168698_115502	Ga0168698_1155021	F071325	FGIVYRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFRYFFELSKRFLKAFHPHALRFPAAFLLVHRFYLAFEELLSRATAYL
Ga0168698_126544	Ga0168698_1265442	F059106	HAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV