3300028024: Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T3_179

Overview

Basic Information

• IMG/M Taxon OID: 3300028024
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127566 | Gp0293643 | Ga0255336
• Sample Name: Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T3_179
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Restricted

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Dataset Contents

• Total Genome Size: 181711415
• Sequencing Scaffolds: 18
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Canada: Vancouver, British Columbia
• Coordinates
  • Lat. (^o): 49.2598372
  • Long. (^o): -123.2459363
  • Alt. (m): N/A
  • Depth (m): .35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000381	Metagenome / Metatranscriptome	1210	Y
F007854	Metagenome / Metatranscriptome	343	Y
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F018762	Metagenome	233	Y
F033667	Metagenome / Metatranscriptome	176	Y
F042777	Metagenome / Metatranscriptome	157	Y
F046771	Metagenome / Metatranscriptome	150	Y
F055579	Metagenome / Metatranscriptome	138	Y
F061453	Metagenome / Metatranscriptome	131	Y
F062236	Metagenome / Metatranscriptome	131	Y
F063257	Metagenome / Metatranscriptome	129	Y
F063258	Metagenome / Metatranscriptome	129	Y
F067178	Metagenome	126	Y
F069613	Metagenome / Metatranscriptome	123	Y
F074276	Metagenome / Metatranscriptome	119	Y
F078103	Metagenome / Metatranscriptome	116	Y
F080760	Metagenome / Metatranscriptome	114	Y
F084257	Metagenome / Metatranscriptome	112	Y
F086460	Metagenome / Metatranscriptome	110	Y
F093076	Metagenome / Metatranscriptome	106	Y
F093095	Metagenome / Metatranscriptome	106	Y
F100183	Metagenome / Metatranscriptome	102	Y
F106182	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255336_100110	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	191478
Ga0255336_100272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	101506
Ga0255336_100327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	87598
Ga0255336_100463	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	63432
Ga0255336_100533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	55294
Ga0255336_100584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	49979
Ga0255336_100795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	35224
Ga0255336_101057	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	25373
Ga0255336_101058	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	25304
Ga0255336_101123	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	23570
Ga0255336_101137	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	23159
Ga0255336_101281	All Organisms → cellular organisms → Bacteria	19452
Ga0255336_101417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17366
Ga0255336_101643	All Organisms → cellular organisms → Bacteria → Acidobacteria	14696
Ga0255336_101656	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	14493
Ga0255336_102312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9929
Ga0255336_102578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8757
Ga0255336_102671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8430

Sequences

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold ID	Protein ID	Family	Sequence
Ga0255336_100110	Ga0255336_100110143	F062236	LDHWGAQFANAVEQRGEGQSDFALDLIDLLQQKAEEFNEQTSDAFKFPLQVTSKGEDVAVTNGYKTVAANSTSLPGAIFIRVWNNSTERAFEGTLHNTPNGFEADGIPSECAEPSGLAEWMIHEVFEP
Ga0255336_100110	Ga0255336_10011049	F084257	MLTLKKPIKQYYSEAEAAHTLCISTEALHEILDKHVFNHEHPRPEVLEFTHAELLLISVWAEPARGANVVAMPARN
Ga0255336_100272	Ga0255336_10027289	F000381	MCPACIASTAVIVAGAGSTGGVLAVCIGKFRKFFKANNLNLFQKTKEK
Ga0255336_100327	Ga0255336_10032731	F067178	MVASEVAITVSIELLARRAHLSLATILVDRSLLALALLVLIVRPSRDQWTPRSMPLALVRVVTGGLTFVGWFGAIGLLSGRVTQAVLLLDALILAYVRGERRKYERRTLLVLASSLILFAAQAVREPGTVVNAGRGIVFLLIALGSRAATYKVWERAQGKQEHLFWLIAPALVGGALGGVFLGFGESGHSGLQTLSPAMWGAMLLVAMVGLTGYFYMNTVMALLGAFYTRVVELWQVPMLWAMHLLTDHTHVDLIQGALGGLVACASAYTYLQHRRARIGEKVNP
Ga0255336_100327	Ga0255336_10032746	F078103	VFSLMSLVMFAVIVLSLAAGVGLGYAIIFGILNLFDRSRQMIKTAPAQILTTSSGSD
Ga0255336_100327	Ga0255336_1003277	F100183	MRRIAFGIALLLSVAASSQAQGSWSFKGTVIRMRMAECTAQKGFMAAMSGSPVQVPSSCPEYTIVGDKVVYVVVGRHAEEFMPLAENMDFLIRKNELVLFSDDEKARSRFAIQQMTLRGDWEREEAQKEAEARAMERSANYQLRNPASRTSMISSNSR
Ga0255336_100463	Ga0255336_10046331	F080760	MTTKTLATTAAVPEGQKLSVLEPQRGACVEFVKFCKEQHLSSRAAHTFLRVLHNKTWDAECDKIRDSMRPEVDRIFEPAEKALNEGANCKEVLAVLVESLKKAEEL
Ga0255336_100463	Ga0255336_10046341	F033667	MILLVTSSNRRMECGAALEIVIGESVEVCETVRKAASMLRNNEYSAVVMDEPMVEADGDALESLLNNIGLAVPVYVNLAVSNADRVARELRLALRRNRESRMIAVRAAESQLRSEIRDAITGILLSAELAMRTPEIPADAIEKLTSVCQLASSVRSRLESVN
Ga0255336_100533	Ga0255336_10053332	F069613	MPVLVIGVIFFALFLVMGALATVAVLSETRGMPGSVLQYKRVRNGAQK
Ga0255336_100584	Ga0255336_1005843	F046771	MTNYKRLLFCILVVVLCLLAASCKRKSEKEFKPSKLAGELFSGQSLQTAERKLDMMGGNFDILVDRTPLPSDSRPPYRLLVISKKNARVAGQAGELVLTFFNDRLMTSQFYPVDMASARAAVESGQSITLADGEAHIDPSTRVWVGKDEGGRSYIGWIDKSLQAEQDAWVKQYGQ
Ga0255336_100795	Ga0255336_1007952	F074276	MRGKKTRYTFVIEFLGGTYVHQASGESPELALRAWLRIASDEEFEWAIHRVELLKALADECAVPVEGCQNVWCMSGLAGDYLFLIHIIATESGSAAGKSVAEEQLEQIGADPKRWGWGDR
Ga0255336_101057	Ga0255336_10105711	F042777	MNHEHDQYVVSIQAQSFRKKTRYHWMICWENNPEELVSWGHAPTQELAEAEARNEVRDLLSGLTQGGRVESTSYSAIHHC
Ga0255336_101058	Ga0255336_10105821	F093076	MNGAANNNVYLYAAYIVVWTVHVIYALSLVSRNKRMKRESRELSRH
Ga0255336_101123	Ga0255336_1011234	F093095	MTTAEPQRNLFQTWVYNFFAMYLGVTPPAPGKEVFYTTLLIGVTLGLVGAGFLIVRFLLTQILG
Ga0255336_101137	Ga0255336_1011371	F063257	MSDSIRSMAIMKPHPGKELEMEAFLREFYAMMYTKQYSRDMLFHDRKQPGILLHLRIWLSDEARNTAVQDPAVHHYWMKLPELGTITTIYEELEPIFSTQEGIVEDILESGI
Ga0255336_101281	Ga0255336_1012814	F061453	VRESERRPLFVSRSVKPVAATVGPVILFTAGGRRFAVEAVEVEEIRDRDERLALRKSREPELIDFALLVGLGAGILERFVLLKPGECSLGVTEVERMATLPKVVQLPGLFRGAERQWYRGLLLLENEVIPLVRTDYWRKVAASMREIGSGA
Ga0255336_101417	Ga0255336_10141712	F013999	MFRIISRERRIAVRQFARPFGPVVMALQLSLPASAQVAGDRVTSFLSNSLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0255336_101417	Ga0255336_10141715	F018762	MRRLPKKMAFVGVLLGTVILLPAAAHAIFGTMPVIDLTTVGRIAEQIGVSRETLNTLGLYVQQYNRINEGVQEGVALSRGRQLRGLMNQPVGSQYPGFQQLQYDFRNVLVDPSTIRQDLENSYGITSGNFPISRMKRIDAADATATLGLFDASRMELVSEQEELDANDIEARAAAASPGGAAKLSAASNGALLRSQAYNQRLLARLMRLQALSIARENSVEKEQEQIRQDQASAVANMVGSMQLSYGLGDRLGR
Ga0255336_101417	Ga0255336_1014177	F016649	MRDKYLLVSVVLSLAFLTTIACNSRPNVSGVWKGSIQASEQGGKNRWQGPAELTLNQNGDAITGSLAFTHPQGGRVQVPITSGVVSSDSVTFAGQSQFPLGGSLEITFRGKASGTSLTGTTDMTSRGLFGTVSNSGPLTLQKQ
Ga0255336_101643	Ga0255336_10164311	F063258	MATAKRFKIAIVVFALLGALEWSTLSPETIRVVNGPNGAPLLDISIRGVALAVLALFAFRSWIHYRREVLEERSRSGQ
Ga0255336_101656	Ga0255336_10165613	F106182	MKWIDALFAWALVLLGGAHFLAAWVPKLAVLRGPWTGGAAVAIVSMGLMNAVRSQRRKDGFLSWMTALVTALTGAMCIGVLYHFPGNVLHQPAALATGVLAVVELFFALAR
Ga0255336_102312	Ga0255336_1023122	F086460	MRLAAAILLLTVCLYAATPPWKAAKFRGLELGRAHRDDVTRVLGAPDAANHVHGGDELIYRGRGEHKGDLTVRLDRLGVVTEIQEAFPVSIPRTQIYKELGKDAMTAHFSKAKCAGDALYRNARGAIELTLFPEHGIALWPDQYGYDFAAILYLAKTPGLARVPVCAAKR
Ga0255336_102578	Ga0255336_1025787	F055579	MSNDCYTHYVVLNEIILGEARIVKKCNEWISLAFVELGIGGQKPFNDYAFVENRTLVPKIEN
Ga0255336_102671	Ga0255336_1026718	F007854	MNTIIANQYGRVQGEVAGNCGLTFAVAAETPRRESVKLQTRIDSVEQQLHLLAILRAVECRIEQFQLRDAKTPQSAEQESPFDDTICTEGDLFGSNGSSSKNKIYGRFAQFLVYEQVDQGRLRVFFAVRDDAKRVARFDLHPGEVQAMQALARRALYASEQIDLLLRDDLSLSVALNVSGHGLRFDVQTPLWRSQFAVCKANDMATLAVFTRRAVNQEKAVPIRFGDEANQFGLRKRNDGQVVAEFQHQDAAERVPVSTLQLYELEALAQYALHRAFEPAANVAIEGHLQPKTEASAQIA