Sample 3300028011

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300028011

3300028011: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1

Overview

Basic Information
IMG/M Taxon OID	3300028011 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0306251 \| Ga0265344
Sample Name	Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22795068
Sequencing Scaffolds	19
Novel Protein Genes	23
Associated Families	23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	10
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → valley → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000746	Metagenome	908	Y
F002220	Metagenome	581	Y
F003931	Metagenome / Metatranscriptome	461	Y
F004318	Metagenome / Metatranscriptome	443	Y
F004883	Metagenome / Metatranscriptome	420	Y
F004934	Metagenome / Metatranscriptome	418	Y
F007705	Metagenome / Metatranscriptome	346	Y
F008074	Metagenome	339	Y
F009429	Metagenome / Metatranscriptome	318	Y
F017942	Metagenome / Metatranscriptome	237	Y
F018655	Metagenome / Metatranscriptome	233	Y
F030264	Metagenome / Metatranscriptome	186	Y
F035000	Metagenome / Metatranscriptome	173	Y
F035852	Metagenome / Metatranscriptome	171	Y
F041888	Metagenome / Metatranscriptome	159	Y
F053416	Metagenome / Metatranscriptome	141	Y
F057536	Metagenome / Metatranscriptome	136	Y
F060143	Metagenome / Metatranscriptome	133	Y
F061712	Metagenome	131	Y
F067942	Metagenome / Metatranscriptome	125	Y
F077550	Metagenome / Metatranscriptome	117	Y
F083206	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0265344_100472	All Organisms → Viruses → Predicted Viral	1051	Open in IMG/M
Ga0265344_101072	Not Available	767	Open in IMG/M
Ga0265344_101397	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
Ga0265344_101419	Not Available	698	Open in IMG/M
Ga0265344_101507	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
Ga0265344_102283	Not Available	599	Open in IMG/M
Ga0265344_102312	Not Available	597	Open in IMG/M
Ga0265344_102525	Not Available	582	Open in IMG/M
Ga0265344_102689	Not Available	570	Open in IMG/M
Ga0265344_102697	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
Ga0265344_102765	Not Available	566	Open in IMG/M
Ga0265344_102896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
Ga0265344_103302	Not Available	536	Open in IMG/M
Ga0265344_103434	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	530	Open in IMG/M
Ga0265344_103804	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
Ga0265344_103877	Not Available	512	Open in IMG/M
Ga0265344_104021	Not Available	507	Open in IMG/M
Ga0265344_104079	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
Ga0265344_104210	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265344_100472	Ga0265344_1004721	F000746	GIININYKVIIEVLIEVYFKVITRKSAMFIRSQITS
Ga0265344_100472	Ga0265344_1004722	F008074	VVVIFKGELKSARGLLVYLVVIAVLYKILNCLNLNFIAYLLKNPK
Ga0265344_100883	Ga0265344_1008832	F060143	MRSKSGFISSLLLTAALAAPVAVMATRGPQEASVQVRVYDKNHKDY
Ga0265344_101072	Ga0265344_1010721	F002220	RKAIESLFRERIYLLKSNSIIKLSFSFSFTIRFAFTSSSSLRAKNWLSPKIIILLVYMPTILNRVPIVIIRKYRLNIEVVIKSFSL
Ga0265344_101397	Ga0265344_1013972	F053416	MPTPSYQSRPKASRAGLLLLALLLFRAYIPVGFMPASGVPFALQLCPAGTEMPAHLHHHAGGHGDFESCPFGSAPGAAPISQHIDFQTPGPAPSLRMASPKTPLLVHRSQSTHQPRGPPSLA
Ga0265344_101419	Ga0265344_1014191	F077550	YAAETLCESAATWGKKEGSACVQKAVNDAVARVNAPLLTQYSQLRSKGDKGGLVQLAKTN
Ga0265344_101507	Ga0265344_1015072	F007705	SHVCRGIGIHAIDIVQPPGIGIPRFPDMDPHQAIVIAAHEAKSSAEMQRKVRGEPRSDSLQHIPL
Ga0265344_101738	Ga0265344_1017382	F018655	VVDSIYIVVDYLYRVVDSLCRVMDSLYRVVDSLYRVVDSLYRVVVSLYRVVDSLYRVVDSLCIVVDYLYRVFDSFYRIVDSLHRVVDS
Ga0265344_102283	Ga0265344_1022831	F061712	IYYTRIAALKITGFPIIIIYRVRVVSFKITSLTIAIIKLRSFLKRIISLYIASR
Ga0265344_102312	Ga0265344_1023121	F017942	YRVVDSLYRVVDSLYRVVDSIYIVVDYLYRVVDSLYRVLDFLYRVVDSLYRVIDCLYRVVDSLYRVLDFLYRVVDSLYRVMDSLYRVLDSLYRVLEFLYRVVDSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF
Ga0265344_102343	Ga0265344_1023431	F067942	AIGGWAFHKIPDGWKIQEGLGIQQIVTDAFPATIGAMEEPLGPGLTLQHYVDAHTKMFREYLRDPKIDIASPSAIRGSEETVALEIRYSLKDGPPIYYRRVYVRCGSIVGVLTLTTLEKDLPSVRPLYDSVVSAITFTR
Ga0265344_102525	Ga0265344_1025251	F003931	LFADGFTGDRSGFALVELPVGSTKFVTVKTSNAPEFPGSVQWDGTYLTVFDQYTASTYQYAVSGTTATLKNTIQFTGASDCAQTWIVKGLLYCGDAGTNGGEVFKYPDGGSPIATFTGNFDFPLGVTAAKK
Ga0265344_102689	Ga0265344_1026891	F035852	QAMENSILYTFSTIAQALGGAFALLSAFVLFRFQSLDASMLNASLGLRCIWKSKADLESYDTLRGLSIWPSLNKAIEAQIARMIAVHETPSFEVMATKTRLKAGESLHSFLTVVFWVAVSLTFVVMTSSVAIIPYAHDIIETHTAKWIHWLNLGGVVAFGLCMISYMAVIYSALLSRYGKDIIQPRIDA
Ga0265344_102697	Ga0265344_1026971	F057536	VSTEFLDRLASQLKIGKGPASRRAIERILDITKTGYENGEYENPVEAERDFRRLVSLQE
Ga0265344_102765	Ga0265344_1027651	F004318	MVSYVVSYLGLGLVLGTELVLDLGLGSLSILFIVGY
Ga0265344_102896	Ga0265344_1028961	F083206	RQSRLLADIVAKVFSGWRTKILRAAEAFYARRREGPYRFIQNRSRTSVVALKRDTEAEKSEDQLSRDF
Ga0265344_103302	Ga0265344_1033021	F000247	VHTNAINTTLSYKRIPRIEVAYTNYLTSSLNTFIDKTLVPGFSALFAYPSIDRKLYYNGSLSLDESIDLTSTDL
Ga0265344_103434	Ga0265344_1034341	F041888	MRKRSTLFLSLLVPAFLGLGGYAVLKAQQKTSTASATRWSDAATWPD
Ga0265344_103804	Ga0265344_1038041	F035000	RMDELLRKAEEMGLNYDEKTELSLLLKSKGRPQARS
Ga0265344_103877	Ga0265344_1038772	F004934	MPSLTAKDRISLCLFSYEDGRRCRTPRISSHPHFCFYHAQKESQSQTAEKLAKELAYFF
Ga0265344_104021	Ga0265344_1040211	F030264	MSDFQDPINHTTTGTPRWVGLAVAVLGGVSLLGLGVGWSALNHANSIEQSTQASVKQSN
Ga0265344_104079	Ga0265344_1040791	F009429	MMDTEAFREFKTGLTLLRDNYAVKALPHMKKAVDLDRNNPYYMS
Ga0265344_104210	Ga0265344_1042101	F004883	EIEAAGRAARLELKALAAALAVDGAETLLAKQLTPAAQESLVDMFVKSLEGRPN

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