NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F083206

Metagenome / Metatranscriptome Family F083206

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F083206
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 73 residues
Representative Sequence RGDIVAKVFLGWRTKILRAANAFYARRREGPYRFIQNRSRISVVALKSDAAAEKSKDQLSRDF
Number of Associated Samples 103
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 18.92 %
% of genes near scaffold ends (potentially truncated) 81.42 %
% of genes from short scaffolds (< 2000 bps) 92.92 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.575 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.620 % of family members)
Environment Ontology (ENVO) Unclassified
(39.823 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.212 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148
1JGI12635J15846_104579242
2C688J35102_1203697412
3Ga0063455_1012689481
4Ga0066677_101118582
5Ga0066673_105210591
6Ga0066684_100458953
7Ga0065704_106996862
8Ga0070690_1006031211
9Ga0068868_1014589912
10Ga0070660_1005439061
11Ga0070689_1010502551
12Ga0070668_1009489981
13Ga0070669_1002155162
14Ga0070671_1002834861
15Ga0070674_1020890801
16Ga0070703_100497441
17Ga0068853_1010106881
18Ga0070672_1010370553
19Ga0070704_1003592412
20Ga0066699_101440872
21Ga0068861_1004183883
22Ga0068863_1013636281
23Ga0068860_1001891851
24Ga0068860_1014632003
25Ga0068860_1027376372
26Ga0068862_1025549581
27Ga0066791_100940021
28Ga0075028_1006512441
29Ga0075026_1003863992
30Ga0075018_100918052
31Ga0075014_1006202541
32Ga0075366_104586911
33Ga0097621_1019583541
34Ga0068871_1007860932
35Ga0068871_1019913691
36Ga0066797_12798232
37Ga0075528_102361301
38Ga0099795_105301961
39Ga0066793_107723811
40Ga0105240_125529481
41Ga0075418_103018313
42Ga0105247_113125492
43Ga0066709_1016695161
44Ga0099792_108469211
45Ga0099792_110516791
46Ga0099792_112287741
47Ga0111538_114756151
48Ga0075423_104454083
49Ga0105249_100825521
50Ga0105249_115974212
51Ga0105858_10714282
52Ga0105858_11494171
53Ga0126309_112681251
54Ga0099796_103721091
55Ga0134125_125730691
56Ga0105239_107343061
57Ga0105239_134065851
58Ga0134126_103560081
59Ga0134124_123203112
60Ga0134127_130347721
61Ga0134127_134401011
62Ga0137370_109752151
63Ga0137358_108413152
64Ga0157285_101983912
65Ga0137359_104815963
66Ga0137413_100325291
67Ga0137410_107701811
68Ga0164303_102083232
69Ga0164301_112858401
70Ga0164305_113549211
71Ga0157374_118154721
72Ga0157378_125583242
73Ga0157378_127662891
74Ga0163162_112449391
75Ga0163163_120451132
76Ga0173483_108391811
77Ga0132256_1010438711
78Ga0184608_104377101
79Ga0184617_10642362
80Ga0190274_127348491
81Ga0190264_115767891
82Ga0190267_107528161
83Ga0193743_10715202
84Ga0210410_107482802
85Ga0207697_100107761
86Ga0207691_101565641
87Ga0207689_102175022
88Ga0207679_102784141
89Ga0207668_118438021
90Ga0207708_103699291
91Ga0207648_106766032
92Ga0207698_108916892
93Ga0209855_10349341
94Ga0257157_10238742
95Ga0209807_13438311
96Ga0208995_10995081
97Ga0209811_103504641
98Ga0209068_101974761
99Ga0209069_103444551
100Ga0265344_1028961
101Ga0307304_102134811
102Ga0307512_101252041
103Ga0170834_1117795752
104Ga0308184_10258472
105Ga0307499_100589942
106Ga0307509_100942898
107Ga0307516_109637811
108Ga0307468_1001609482
109Ga0310902_106916801
110Ga0307470_115396781
111Ga0307510_102825272
112Ga0372946_0336020_37_306
113Ga0373948_0057716_64_318
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 64.84%    β-sheet: 0.00%    Coil/Unstructured: 35.16%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530354045505560RGDIVAKVFLGWRTKILRAANAFYARRREGPYRFIQNRSRISVVALKSDAAAEKSKDQLSRDFSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
95.6%4.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Surface Soil
Arctic Peat Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Permafrost Soil
Soil
Prmafrost Soil
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Plant Litter
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Endosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Ectomycorrhiza
Populus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere Soil
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
5.3%10.6%8.8%4.4%3.5%5.3%3.5%3.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1045792423300001593Forest SoilSKSTLCADIVAKVFLGWRTKILRAADYARRREGPYRFIQNRSRTSVVALKSEAAAEKSKDQL*
C688J35102_12036974123300002568SoilAAPRIAGTREDQFLYLMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0063455_10126894813300004153SoilPRIAGTREDQFLYLMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0066677_1011185823300005171SoilMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAAERSKDRLSREF*
Ga0066673_1052105913300005175SoilMESIGPLTADIVAKVFSGERTKILRPVDALYVRRREGPYRFIQNRSRTPVVALKGDAAAERSKDRLSREF*
Ga0066684_1004589533300005179SoilMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAA
Ga0065704_1069968623300005289Switchgrass RhizosphereDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIPW*
Ga0070690_10060312113300005330Switchgrass RhizosphereADIVAKVFLGWRTKILRAADALYARRREGSYRFIQNRSGISVVALKSSTAAEKSKDQLSRDFPGRSVFDFCNNIQPKADVQPSRLLTG*
Ga0068868_10145899123300005338Miscanthus RhizosphereAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDATAEKSKDQLSRDFPGRSIFDFCNNIEGKADCPVARSDF*
Ga0070660_10054390613300005339Corn RhizosphereVADIVAKVSLGGQPKFFSAADAFCERRRERPHRFIQNRPGTSVAALKSDTAAEKSKDQLSRDFPGRSIFDFCN
Ga0070689_10105025513300005340Switchgrass RhizosphereMTRCADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCN
Ga0070668_10094899813300005347Switchgrass RhizosphereTDIVAKVFLGWRTKILSAADASSAQRREGPYRFIQNRSRSAVVALKSDAAAEKSKDRLSRDF*
Ga0070669_10021551623300005353Switchgrass RhizosphereADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGTSVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNICQLRSPPFFRRGQRCR*
Ga0070671_10028348613300005355Switchgrass RhizospherePLWVDIVAKVFSVWRPKIPRAVDASSARRREGPNRFIQNRSRTSVVALKSDAAAEKSEDRLSRDFYGCSIFDFCNKIGT*
Ga0070674_10208908013300005356Miscanthus RhizosphereMACRLKACPLWVDIVAKVFLGGRTKFIRAVDAYSERRREGPYRFIQNRPGTSVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNI
Ga0070703_1004974413300005406Corn, Switchgrass And Miscanthus RhizosphereLVRRPLSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAENSKDQLSRDFPGRSIFDFCNNICQKRK*
Ga0068853_10101068813300005539Corn RhizosphereDIVAKVFLGWRTKILGAADALYARQHEGPYRFIQNRSRTSVVALKSDAAAEKSKDQPSRDFPGRPIFDCCNNIRCKVDLALECIEVRV*
Ga0070672_10103705533300005543Miscanthus RhizosphereMSFDVCFRGDIVAKVFLGWRTKIPRAADASYARPREGPYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF*
Ga0070704_10035924123300005549Corn, Switchgrass And Miscanthus RhizosphereMHGDVVRLGVDIVAKVFLGRRTKILGAADALYARQREGPYRFIQNRSRTSVVAL
Ga0066699_1014408723300005561SoilMLGLLLADIVAKVFSGERSKILRPVDAFYVPRREGPYRFIQNRSRNPVVALKGDAAVERSKDRLSREF*
Ga0068861_10041838833300005719Switchgrass RhizosphereGDIVAKVFLGWRTKILRAADAFCARRREGPYRFIQNRSPTSVAALKSDAAAEKSKDQLSREF*
Ga0068863_10136362813300005841Switchgrass RhizosphereKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0068860_10018918513300005843Switchgrass RhizosphereMWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRDFSGRSIFD
Ga0068860_10146320033300005843Switchgrass RhizosphereRTCRRTRPGQLCADFVAKVFLGWRTKILKAADAFCARRHEGPHRFIQNRSRISAVALNSDAVGENSKDQLSRDF*
Ga0068860_10273763723300005843Switchgrass RhizosphereDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICQ*
Ga0068862_10255495813300005844Switchgrass RhizosphereMADIVAKVFLGWRTKILRAADALYAWQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPG
Ga0066791_1009400213300005949SoilLLLTDIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLGSVVALKSDAAAEKSKDQLSRDF*
Ga0075028_10065124413300006050WatershedsTIVRETGRLRADIVAKVFLERRTKIPRAADAYYARRREGPCRFIQNRSLASVGALKSDAAAAEKSKDQLSRDF*
Ga0075026_10038639923300006057WatershedsMMVLLRRKSPGLADFVAKVFLGCRTKILRAVGAFCAQRCEGPYRLIQNRPRASVMALKSDAATERSKDQLP
Ga0075018_1009180523300006172WatershedsVKKLFPVMADFVAKVFLGRRTKILRAADAFCARRCEGPYRLIQNRLRTSVMALKSNAAAERSKDQLSRDFWGCSIFDFCN
Ga0075014_10062025413300006174WatershedsIVAKVFLGCRTKILGAADAFYAWRREGPYRFIQNRPRTFLAALKSYGAAEKSKDQLSQDFWGCSIFDFCNNICQRATLPGYLK*
Ga0075366_1045869113300006195Populus EndosphereLLADIVAKVFLGRRSKIPKAADALHARRGEGPYRFIQNRSRVPVTALKSDAATE*
Ga0097621_10195835413300006237Miscanthus RhizosphereLADIVAKVFLGWRTKILRAADALYARQLEGPYRFIQNRSRASAVALKSDAAAEKSRDQLSRDFPGRSIFDFCNNI
Ga0068871_10078609323300006358Miscanthus RhizosphereSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICHYRK*
Ga0068871_10199136913300006358Miscanthus RhizosphereADIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNWSGISVVALKSSTAAEKSKDQLSRDFPGRSVFDFCNNIQPKADVQPSRLLTG*
Ga0066797_127982323300006864SoilRSLRVDTVAKVLLGRRTKILRTADAFQARRREGPHRFIQKRPRTFVSAL*
Ga0075528_1023613013300006949Arctic Peat SoilDIVAKVFLGWRTKILRAADAFYARRRDGPYRFIQNRSRVSLVALKSDPAAEKSKDQLSPDF*
Ga0099795_1053019613300007788Vadose Zone SoilMSPLLADIVAKVFLGWRTKTLRAAGAFSARRREGPYRFIQNRSRASVVALKSDAAAEKSKDQLWRDFQG
Ga0066793_1077238113300009029Prmafrost SoilVADFVAKVFLGCRTKILRATDAFYARRREGPYRSVRNRPRSFVAALNSEAAAEK
Ga0105240_1255294813300009093Corn RhizosphereVKVPFAADIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNRPGASVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNMG*
Ga0075418_1030183133300009100Populus RhizosphereDIVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGASVVALKSDTAAEKAKDQLSRDFSGRSIFDFCNNIGT*
Ga0105247_1131254923300009101Switchgrass RhizosphereMTRCADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNI
Ga0066709_10166951613300009137Grasslands SoilKAPLTEWPLLADIVAKVFSARRSKIPRGADPLHAWRRQGPYRFIQNRSRTSVVALESDAAPEKFKDHLSRDI*
Ga0099792_1084692113300009143Vadose Zone SoilMADIVAKVFLGWRTKILRAADGFFAWRREGPYRFIQNRSRTSVVALKANAAAEKSKDQLSRDF*
Ga0099792_1105167913300009143Vadose Zone SoilMNRHRQLGATRPKSADIVAKVFLGWRTKILRALMRYTRQREGPYRFIQNRSRTSAVALKSDAAAEKS
Ga0099792_1122877413300009143Vadose Zone SoilMSVLEDFVAEVFLGCRTKILRAADAFYAQRREGPYRFIQNRPRTSLVALKSDAAAERSTDQLSRDF*
Ga0111538_1147561513300009156Populus RhizosphereMADIVAKVFLGWRTKILRAADELYARQREGPYRFIQNRSRTSAVALKSDAAAENSKDQL
Ga0075423_1044540833300009162Populus RhizosphereLDIATRLKSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0105249_1008255213300009553Switchgrass RhizosphereTRDSSAYFRFRRDIVAKVFLGWRTKILGAADALYARQHEGPYRFIQNRLLTSVAALKSDAAAEKSKDQLSRDF*
Ga0105249_1159742123300009553Switchgrass RhizosphereLADFVAKVFLGCRTKILRAADTFWARRRKGPYRFIQNRSPTSVAALKSVAAAEKSKDQLSRDF*
Ga0105858_107142823300009661Permafrost SoilCMSLFLADIVAKVFLACRRKIPGAAGAFYARRGEGPYRFIQNRSLASFVALKGAAAAEKSKDQLSRDF*
Ga0105858_114941713300009661Permafrost SoilMKPRLPVMADIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLGSVVALKSDAAAEKSKDQLSRDF*
Ga0126309_1126812513300010039Serpentine SoilMSPLVADIVAKVFSGWRTKIPRAADALYSRRREGPYRFIQNRSRTSVVELKSYAAAEKSK
Ga0099796_1037210913300010159Vadose Zone SoilMSVEHILPIPLVADIVANVFLGRRTKILRAADALCARRSEGPYRFIRNRSRTSVVALRSDATAEKSKDQLSRDFQGRSIFDFCNKIGT
Ga0134125_1257306913300010371Terrestrial SoilMWRPTARGLLLSDIVAKVFLGGRTKFLRDADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRDFSGRSIFD
Ga0105239_1073430613300010375Corn RhizosphereKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDATAEKSKDQLSRDFPGRSIFDFCNNIEGKADCPVARSDF*
Ga0105239_1340658513300010375Corn RhizosphereMWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAAEESKDQLSRD
Ga0134126_1035600813300010396Terrestrial SoilLTDIVAKVFLGWRTKILGAADALYARQHEEPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGAKRTFGPLAIS*
Ga0134124_1232031123300010397Terrestrial SoilLDIATRLKSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNI
Ga0134127_1303477213300010399Terrestrial SoilSADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGGKPEVIDGGPNRRD*
Ga0134127_1344010113300010399Terrestrial SoilIVAKVFLGWRTKIPRAADASYARPREGPYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF
Ga0137370_1097521513300012285Vadose Zone SoilERTRGREGQLLADIVAKVFSGERTKILRPVDALYVRRREGPYRFIQNRSRTPVVALKGDAAAERSKDRLSREF*
Ga0137358_1084131523300012582Vadose Zone SoilTLKSRHRQSAPARLLCADIVAKAFLGWRMKIFRAAEAFCARRREGPYRVIQNRSRTSAVALESDAAAEKSKDQLSRDF*
Ga0157285_1019839123300012897SoilMVDFVAKVFLGWRTKILRAADALCARRCEGPYRFIQNRARTFVAALKSDAAAEKAKDRLSRDYK
Ga0137359_1048159633300012923Vadose Zone SoilMERLLVADIVAKVFLGGRTKFFRAADAFYEWRREGPYRFIQNRPGISIVALKSNTAAEKSKDHLSRDFPGRSIFDFCNNIGAKRSVGDLKRG*
Ga0137413_1003252913300012924Vadose Zone SoilDIVAKVFLGGRTKFFRAADAFYERRREGPYRFIQNRPRISVVALKSNTAAEKSKDQLSRDFPGRSIFDFCNNICHFRISTRATCKE*
Ga0137410_1077018113300012944Vadose Zone SoilMPGSGQKLTFTGCPLLADIVAKVFLGWRTKILRAADAFYARRREGPYRFIQNRSLTSIGALKSDAAAEKSKDQLSRDF*
Ga0164303_1020832323300012957SoilADIVAKVFLGWRTKILRAADAFYAGRREGPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT*
Ga0164301_1128584013300012960SoilCPRSLVVADIVAKVFLGRRTKILRAADAFYARRREGPHRFIQNRSPTFVAALKNDAAAEKSKDQLSRDF*
Ga0164305_1135492113300012989SoilSVAKRVLGWRTKILGAAEAFYARRREGPYRFIQNRSPTSVAALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICHKRKNSR*
Ga0157374_1181547213300013296Miscanthus RhizosphereVADIVAKVSLGGQPKFFSAADAFCERRRERPHRFIQNRPGTSVAALKSDTAAEKSKDQLSRDFPGRSIFDF
Ga0157378_1255832423300013297Miscanthus RhizosphereMDIRFRRDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCN
Ga0157378_1276628913300013297Miscanthus RhizosphereMSGGGDCGQECPELADIVAEVFLGQQSKTPKAADALHARRGERPYRFIQNRSRASVTALKSDAAAEKSKDQLSRDF*
Ga0163162_1124493913300013306Switchgrass RhizosphereMTDIVEKVFSGWRPKILRAADASSARRREGPNRFIQNRSRTSVVALKSDAAAEKSKDRLSRDF*
Ga0163163_1204511323300014325Switchgrass RhizosphereLLPRLSQVRSYLDSRHRRARLARPFRADIVAKVFSSWRPKILRAADASSARRREGPKRFIQNRSRASVVALKSDAAAEKSKDRLSRDF*
Ga0173483_1083918113300015077SoilLRPPGDIVAKVFSGWRTKILRPADAFCAWRREGPYRFIQNRSPTSVVALKSDAAAEKSKDQLWRDFQACSIFDFCNNIEGGADIPPQGRDFPLWFT*
Ga0132256_10104387113300015372Arabidopsis RhizosphereMTDIVEKVFSGWRPKIPRAADASSGRRREGPNRFQNRSRTSVVALKSDAAAEKSKDRL
Ga0184608_1043771013300018028Groundwater SedimentMLRCISPDVADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIRQ
Ga0184617_106423623300018066Groundwater SedimentALQCPVLADIVAKVFLGWRTKILRAADALYARQREGPYRFIRNRSRASVVALRSDATAEKSKDQLSRDFPGRSVFDFCNMG
Ga0190274_1273484913300018476SoilIVEKVILGWRTKILRAADALYSRRREGPYRFIQNRSRTSVAALKSDAAAEKSEDRHSRDF
Ga0190264_1157678913300019377SoilVADIVAKVFLGWRSKIPKAADALHARRGEGPYRFIQNRSRTSVTALKSDAATEESEDQPWRDFLACSILGFCNNIR
Ga0190267_1075281613300019767SoilNGHRWTALACLFGADIVAKVFLGRRTKFFRAADAFYEWRREGPYRFIQNRSRTSIVALKSDAAAEKSKDQLSRDF
Ga0193743_107152023300019889SoilMADIVAKVFLGRRTKIFRTADAFYTPRREGLYRFIQNRSRVSVVALKSDAAAEKP
Ga0210410_1074828023300021479SoilRLLADIVAKVFLGWRTKILRAADASYARRREGPYRFTQNPSRISVVALKSDAAVEKSKDQLSRDF
Ga0207697_1001077613300025315Corn, Switchgrass And Miscanthus RhizosphereMADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0207691_1015656413300025940Miscanthus RhizosphereDIVVKVFLGWRTKILRAADASSAQRREGRYRFIQNRSRSAVVALKSDAAAEKSKDRLSRD
Ga0207689_1021750223300025942Miscanthus RhizosphereMADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGRSI
Ga0207679_1027841413300025945Corn RhizosphereTAADIVAKVFSSWRPKILRAADASSARRREGPKRFIQNRSRASVVALKSDAAAEKSKDRLSRDF
Ga0207668_1184380213300025972Switchgrass RhizosphereAIENVRRRLPLLADIVAKVFLGWRTKIPRAADASYARPREGSYRFIQNRSRTFAVTLKSDAAAEKSKDRLSRDF
Ga0207708_1036992913300026075Corn, Switchgrass And Miscanthus RhizosphereQPRLSGPKSADSVAKVFLGGRTKFLRAADAFYERRREGPYRFIQNRPGTSIVALKSVTAAEESKDQLSRDFSGRSIFDFCNNICQ
Ga0207648_1067660323300026089Miscanthus RhizosphereMWRPTARGLLLADIVAKVFLGGRTKFLRAADAFYERRREGPYRFIHNRPGTSIVALKSDTAA
Ga0207698_1089168923300026142Corn RhizosphereMPTVRDGVRFRGDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSALALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIEGKA
Ga0209855_103493413300026220Permafrost SoilPALADIVAKVFLGWRTKILRAADVFYAWRREGPYRFIQNRSRAPVAALKSDAEAEKSKDQLSRDF
Ga0257157_102387423300026496SoilHVRPLMADIVAKVFLGWRTKILRAADASYARRREGPYRFTQNRSRISVVALKSDAAAEKSKDQLSRDI
Ga0209807_134383113300026530SoilGLKSIIAPCPKSADIVAKVFSGERSKILRPVDALHVPRREGPYRFIQNRSRNPVVALKGDAAAERSKDRLSREF
Ga0208995_109950813300027388Forest SoilRGDIVAKVFLGWRTKILRAANAFYARRREGPYRFIQNRSRISVVALKSDAAAEKSKDQLSRDF
Ga0209811_1035046413300027821Surface SoilLKGADIVAKVFLGWRTKILRAADASSARRREGPYRFIQNRSRTSVVALKSDAAAEKSKDRLSRDF
Ga0209068_1019747613300027894WatershedsADIVAKVFLGGRAKIFRTADAFYERRREGPYRFIQNRSRASLVALKRDAAAEKSKDQLSRDF
Ga0209069_1034445513300027915WatershedsMESIVKMEPLKLADIVAKAFLGWRAKILKAADAFYARQREGPYRFIQNRSRTSVVALKSDTAAEKSKDQLS
Ga0265344_10289613300028011Plant LitterRQSRLLADIVAKVFSGWRTKILRAAEAFYARRREGPYRFIQNRSRTSVVALKRDTEAEKSEDQLSRDF
Ga0307304_1021348113300028885SoilGLLCADIVAKVFLGWRTKILRAADALYARQREDHIVSSSRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0307512_1012520413300030522EctomycorrhizaMLQKSFWGGRTKYFRAADAFYERRREGPYRFIQNRPRISVVALKSNTAAEKSKDQLSRDFPGRSIFDFCNNIGTFETC
Ga0170834_11177957523300031057Forest SoilPKGADIVAKVFSGRRTKILRAADAYSPQRREGPYRFIQNRSRTSVTALKSDAAAEKSKYRLSRDFQGCSIFDFCNNIATKRTCGNA
Ga0308184_102584723300031095SoilVFLGGRTKFFRAAGAFYERRREGPYRYIQNRPGISVVALKRNTAAEKSKDQLSRDFPGRSIFDFRNKIGTFRT
Ga0307499_1005899423300031184SoilMPDIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDF
Ga0307509_1009428983300031507EctomycorrhizaMRTACLKGADIVAKVFLGWRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIRQ
Ga0307516_1096378113300031730EctomycorrhizaMAYHGDFRSTAVNGHLRAGRACLKGADIVAKVFLGWRTKILRAADALFARQREGPYRFIQNRSRTSAVALKSDAAAEKSK
Ga0307468_10016094823300031740Hardwood Forest SoilMADIVAKVFLGRRTKILRAADALYARQRGGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDFPGR
Ga0310902_1069168013300032012SoilTSVVGHFSDLTGLPDEVRSRGDFVAKVFLGWRTKILKAADAFCARRHEGPHRFIQNRSRISAVALNSDAVGENSKDQLSRDF
Ga0307470_1153967813300032174Hardwood Forest SoilVAKVFLGWRTKILRAADAVYARRREGPYRFIQNRSRTSVLALKSDAAAEKSKDQLSRDFPGRSIFDFCNNIGT
Ga0307510_1028252723300033180EctomycorrhizaLKGADIVAKVFLGCRTKILRAADALYARQREGPYRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNMG
Ga0372946_0336020_37_3063300034384SoilMIVRAIFGEGPLLADIVAKVFLGWRTKILRAADALYARQREGPHRFIQNRSRTSAVALKSDAAAEKSKDQLSRDFPGRSIFDFCNNICQ
Ga0373948_0057716_64_3183300034817Rhizosphere SoilMRLECGVGFRQLRTHRRTRRGSYVPTAKVFLGWRMKILRAADAFYARRREGPYRFIQNRSRASAVALKSDAAAEKSKDQLSRDF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.