NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028010

3300028010: Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6



Overview

Basic Information
IMG/M Taxon OID3300028010 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128948 | Gp0306265 | Ga0265358
Sample NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size21849679
Sequencing Scaffolds43
Novel Protein Genes44
Associated Families44

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans1
Not Available16
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Strongylida → Trichostrongyloidea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeHost-Associated
TaxonomyHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomerhizospheresoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationNorway: Oslo
CoordinatesLat. (o)59.997Long. (o)10.7902Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000381Metagenome / Metatranscriptome1210Y
F000795Metagenome / Metatranscriptome887Y
F000867Metagenome / Metatranscriptome854Y
F001265Metagenome / Metatranscriptome735Y
F001546Metagenome / Metatranscriptome673Y
F001837Metagenome / Metatranscriptome628Y
F002159Metagenome / Metatranscriptome589Y
F002208Metagenome / Metatranscriptome583Y
F002912Metagenome / Metatranscriptome521Y
F003722Metagenome / Metatranscriptome472Y
F003736Metagenome / Metatranscriptome471Y
F003810Metagenome / Metatranscriptome467Y
F005445Metagenome400Y
F008575Metagenome / Metatranscriptome331Y
F010701Metagenome / Metatranscriptome300Y
F012044Metagenome / Metatranscriptome284Y
F014756Metagenome / Metatranscriptome260Y
F015134Metagenome / Metatranscriptome257Y
F016037Metagenome / Metatranscriptome250Y
F017942Metagenome / Metatranscriptome237Y
F018604Metagenome / Metatranscriptome234Y
F022701Metagenome / Metatranscriptome213Y
F023472Metagenome210Y
F024210Metagenome / Metatranscriptome207Y
F026633Metagenome197Y
F032740Metagenome / Metatranscriptome179Y
F034647Metagenome / Metatranscriptome174N
F036860Metagenome / Metatranscriptome169Y
F047963Metagenome / Metatranscriptome149Y
F049132Metagenome / Metatranscriptome147Y
F050507Metagenome / Metatranscriptome145Y
F053458Metagenome / Metatranscriptome141Y
F054794Metagenome / Metatranscriptome139Y
F058491Metagenome / Metatranscriptome135Y
F059235Metagenome134Y
F062022Metagenome / Metatranscriptome131Y
F065452Metagenome / Metatranscriptome127Y
F083024Metagenome / Metatranscriptome113Y
F088998Metagenome / Metatranscriptome109Y
F089202Metagenome / Metatranscriptome109Y
F092603Metagenome107N
F098106Metagenome / Metatranscriptome104Y
F098148Metagenome / Metatranscriptome104N
F099692Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265358_100004All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3312Open in IMG/M
Ga0265358_100115All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans1478Open in IMG/M
Ga0265358_100211Not Available1259Open in IMG/M
Ga0265358_100359All Organisms → cellular organisms → Bacteria → Acidobacteria1085Open in IMG/M
Ga0265358_100375All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1072Open in IMG/M
Ga0265358_100588All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium939Open in IMG/M
Ga0265358_100792All Organisms → cellular organisms → Bacteria860Open in IMG/M
Ga0265358_101193All Organisms → cellular organisms → Bacteria765Open in IMG/M
Ga0265358_101531All Organisms → cellular organisms → Bacteria717Open in IMG/M
Ga0265358_101678All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium699Open in IMG/M
Ga0265358_101732All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117693Open in IMG/M
Ga0265358_101739All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium692Open in IMG/M
Ga0265358_101866Not Available678Open in IMG/M
Ga0265358_102099Not Available654Open in IMG/M
Ga0265358_102122Not Available653Open in IMG/M
Ga0265358_102144Not Available650Open in IMG/M
Ga0265358_102297All Organisms → cellular organisms → Bacteria639Open in IMG/M
Ga0265358_102424Not Available628Open in IMG/M
Ga0265358_102507Not Available622Open in IMG/M
Ga0265358_102517Not Available622Open in IMG/M
Ga0265358_102531Not Available621Open in IMG/M
Ga0265358_102583All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
Ga0265358_102889Not Available602Open in IMG/M
Ga0265358_103083Not Available591Open in IMG/M
Ga0265358_103099All Organisms → cellular organisms → Bacteria590Open in IMG/M
Ga0265358_103258Not Available582Open in IMG/M
Ga0265358_103423All Organisms → cellular organisms → Bacteria573Open in IMG/M
Ga0265358_103668All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Strongylida → Trichostrongyloidea562Open in IMG/M
Ga0265358_103836Not Available555Open in IMG/M
Ga0265358_103841Not Available555Open in IMG/M
Ga0265358_103941All Organisms → cellular organisms → Bacteria551Open in IMG/M
Ga0265358_104024All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
Ga0265358_104170All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
Ga0265358_104270All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
Ga0265358_104563All Organisms → cellular organisms → Bacteria529Open in IMG/M
Ga0265358_104619All Organisms → cellular organisms → Bacteria527Open in IMG/M
Ga0265358_104813All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
Ga0265358_104879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia518Open in IMG/M
Ga0265358_105144All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae510Open in IMG/M
Ga0265358_105333All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter505Open in IMG/M
Ga0265358_105399Not Available503Open in IMG/M
Ga0265358_105401Not Available503Open in IMG/M
Ga0265358_105459All Organisms → cellular organisms → Bacteria502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265358_100004Ga0265358_1000044F088998LLHLGTLLAAQLWQAAGWSLSISPTILAWDWTAIRRILLLEASSP
Ga0265358_100115Ga0265358_1001152F053458LAILDYGRPCDLASEVDGENGETMSATLGCVLLPGFSAGTDGARHFR
Ga0265358_100211Ga0265358_1002111F083024MSKIKRMGCALILIGLTAVMVRSQDTAGEYVKPAEAVPTGRAPKMQVRLLNPGEATKQFAVIFYQGDEVYS
Ga0265358_100359Ga0265358_1003591F001265MNYQSACTWDIYSLAAADEMLDRRNLMAKEDQMDDLQLRIARVTEDLRTIQRELNCAAMQAPSDPELMESLNSQSQTEPIATLRSALDQMRHFLFFYSQVMENDPELGDKLRQGAPQKLASDEKPTTKRPFLDQLSRSDEAMLLHYLAESKQRKPN
Ga0265358_100375Ga0265358_1003751F003722WCEGAVLRRAETVLQGTTQDILGAEIEYGKKVSRRLWLKELEEGIGLTARHRDTERPEGRRVFEWERVVSCRNADPWWRTKLDFGSGEPFDDLHRSTAFRAAPKNGTILGGRGVLFGLRLLCRAQQLKAERQERGAFAVGQEAEVTDAHEAFRKDVQ
Ga0265358_100588Ga0265358_1005881F054794LLCEHADAFGLAARAKEAVARRVHEMTFGSRADCESYMQRVQKAQQAVANQKQIGGLVRVKLERLRATCEYRNSADTVPTADSLSPSVAELDIDKPKAAPANPWNVLAEDYWDLYTLLLR
Ga0265358_100792Ga0265358_1007921F099692ILILTGDNQSQHDLLLDAGELFSRKEAIEQALHAETFVELVAALNAPVH
Ga0265358_101193Ga0265358_1011931F098148IQSRLKQLYGDESSLELTGGNGRGCEAIITIPLRSSHEDASPHRR
Ga0265358_101531Ga0265358_1015312F049132MTPSNKMRANVAAAVCAGLALRVYLVLKFPVTDTGDAPFYIELAWNWL
Ga0265358_101678Ga0265358_1016781F058491MHLRTLILVAGLLPAFAAISLAQEAAVPAPPQTEAEKVALLDLVLVNEKKGDQAMNFYERVERVELLKNLGDPQPGDIKISRVVPAGTGVDHIPIGPDGKPADPDAYHAELVKLEKALSWAGDDGHAQHDAYDKIAKKQKERDDLIDATRTAFLYTYLSAETRAGRVLYKYSMEPNPAYK
Ga0265358_101732Ga0265358_1017322F016037METLVDLNCSTIECTSPNAPIWQDVLAQAVTGELMAAMNYASLSEICDDPAEVADALEHAQI
Ga0265358_101739Ga0265358_1017396F000795DGSSILLAATKVMSAPTIELEGFEIELASELYCDRGGDHRELVDRACTDRRRLGHNVDESAVLCVRCMKAIPLKA
Ga0265358_101866Ga0265358_1018661F003810VAGHGLHVLKRASLSAQSTLSGTKTRREWVRTNALNLTIRFFINAAAFSYWLAHPDAATHAIGSVGIPGNLTLEPGHATAAMFGLSGDSLVDWAAAKIPFLQKEIPVLKAE
Ga0265358_102099Ga0265358_1020991F050507FVIVLMIALPALAYQYPLSSSDIRNAYLLGYAKDQNTTSFFAPYARQFPTPESGPYISTITLKTPYEQLVELGQSALNADVQGAEEEYATRKLPFLVQVGVDRAATYPGTSPSDTAALGVPLPDFQRDFPARLVQDGQEIAVQSTQVYLLYSDGVGDTYQVSGAIIEYRYDPEKIDPDDEVTFEVHTPDGQDIGTTFDLGRLR
Ga0265358_102122Ga0265358_1021222F012044MTATQSTQRHGATLRRAACRAAAALQAIHDEQVLIWELIWQSSRVPVDRAGPLAWTPSLDGPRLTGRHLPSPDEPQAA
Ga0265358_102144Ga0265358_1021442F002912VSDDEPRGGTTTAVTGEPVPPKRIPVKGRPIRLRWLQQIIWSLVAANVGALIISALYYLIVELRWHAGGRTFLYLKPDWDDLFTFRGWATDRHDIRDVYEAVLATLFVKSLLANWRKKVWRAPAWYVLLSPILIVVVAFPIVAAGIWLINYALPYLWHAI
Ga0265358_102297Ga0265358_1022972F089202MKNRGIDIKHPKQRGEWAELRFMARAAEHGLCITKPW
Ga0265358_102424Ga0265358_1024242F010701VPFLLIGIASVGWAGFSLFTGKGYYRGCPPGGFDRAEQPFSFWIPTLIILGIGICMILIFLGWIPLPLRAVHG
Ga0265358_102507Ga0265358_1025071F022701RDVFAHFNLREAFVHLGKPDQAADEAAEVARLRPSAYYFGSAIQSIRFASRFNEAKSWLAKADSLKFDNLLIRRERLIVAFASGDRDNVAKILKQEEQGRYREDFLSEHALIEIQQGRFHSAERLRVQAFGQTLKPGNADSWLIPSALEDAEVGKDAQARRYETEAAGSPLDHNRKIALAQTLARSGQVAEAARLADEVSVERPEDT
Ga0265358_102517Ga0265358_1025172F018604MKVIVIVPAAGLGTRMASAPQTKGKKPASTKQFTEL
Ga0265358_102531Ga0265358_1025311F034647LALAGLFIRNLRVHNQGNNVEIQTPVGAIKVNKDVPRASGLPVYPGAKSDGNDNNAKVELSNDDGAVGIAVEHFSTSDSLDRVDTWYAHRLGPNFRRDQDVSHHPIHGVTVDSDTDIAFVDDHGEGARVVALTRKGDGVDIVLFRVGKKEAQ
Ga0265358_102583Ga0265358_1025831F098106VYLGNPNAQVWVDLRHALYYCSGSDLYGKTPDGKFTTQRDAQMDQFEPAARKNCD
Ga0265358_102889Ga0265358_1028891F002159VSDIILAVTECQIAPGETACFPFAARTAYGIPSIHDFNVISDNPDFSPEWVRFHRSAGDSYGPHYILEISPGDIGRSQYGAYPLCLSWGEAGTNRYVAGRCALIVRPCVRAVTEPAVKIWPAGQVCLLLENHGSTGIDVSVSIRHRGSDWSKEWEFELPAKDDPFSFSGRFDPPAGKRSGDFELAVSAAGVPLVRRAVRA
Ga0265358_103083Ga0265358_1030831F065452MRPVGVTLVGFYQILRGVIALVFGFFILFYQGPANKFTSVAAHGNVVERLLSRLSHTAGLVIIVFVILHILAGYGVLQVRNWGRTVALLFSGIELLLMVPGIVRVNIFSVVLGAI
Ga0265358_103099Ga0265358_1030991F008575MTEPDPTHVMIVATFAGLEVVKSRGGYTLVDPGRGTPLARLKPIPQSDRFELLYWSDMRGRWRTFGDFGPLRLTLERAHQIFRE
Ga0265358_103258Ga0265358_1032581F092603EYRLEFHRGPETEFSTWLYFPGRFALQYPLFDYPRIAELRTILEGLGLHDTLIFWEGRYFLASTWFDEEEKVGVVFRSRDHGIALTFHHDDWQAIKSLFRRGWQAPEVVRLWNALAREYGEL
Ga0265358_103423Ga0265358_1034231F000867MRKLSIFAQCLVVAWSLTSCSPRDLLSRRLAADLIEGSDAFKTPQSLFVRTGIVSNKDYLSPESLVLQHHGWISATTAPCPPTLAPPPCWDVVLTPSGVETVRPLLAPSDEAKPSFSLPAARRELVAVTGVSKQGNVADVDFVWRWQPANEVGAALYSSDQRYHSTAGFRNYDDGWRVV
Ga0265358_103668Ga0265358_1036681F005445LNPKPQTVPELKRTLQTIWNDLSQDAICKAVLLFRKRLDACVKAGGGHFEHLQN
Ga0265358_103836Ga0265358_1038361F014756MRTPLLLFALLLSASLAWAQGAARNGNSGQRQADRAEDQFEKTVPPPTRQQSSVDFAKVKSDADELMILSQSIHSGIDDVGKGMLPKDLIDKLKQMEKLSKRLRNELAP
Ga0265358_103841Ga0265358_1038411F015134MSPKEIQKLNLALELKAGKKRLEDALHGLSHEQCETAGATRSGSVVELLSEIVTREFLAVMEVSDRLPFFPMNLLANANGRTPAASEIDKAAPDSSVQNLLAEFEVLRSAVIRRVEESGSRDAKLDPKYAYVDDLCITRFNEKIDEIERWRSSQIVGFS
Ga0265358_103941Ga0265358_1039412F000381KMCPACIATAAVMAAGAGTTGGILAVYIGKFRKFFRANDPGLFQKIKEK
Ga0265358_104024Ga0265358_1040241F023472MAEKLTGQDISFLTLQTAVFCVECELISKNNTPYCMACGSRAVLSLSRVLGGSLRGQQTAHLIADAELDRLVRELLRTVPATASENRAPASFATLAPSRNHARAMGSQPAQSLVHVSSNELNIHPGEID
Ga0265358_104170Ga0265358_1041701F032740MTKKKVLEGLRRVIEGNTGKTSEVVRKFKQCPQFQQCCYILSQALQHNTYGRKRSATK
Ga0265358_104270Ga0265358_1042701F003736LLAGRWPPLKPLPIFKFETDEFRATVEFDKTRGEWVCRKTSLPSNRITELRGGLTEITLALPHGQGQLSAESNAAEPQEQESEKEASRRLQAILEWREKYENGALYSGLRRYLSKHQQDEIDASIRLTLTARQLQFNPKNVADVFDALSKAGGKLATLVEAAQRNKTEQRADVPPGVPA
Ga0265358_104563Ga0265358_1045631F036860IEMRRRFEAAAATICNVNLKRFLKEKLREKEDRPI
Ga0265358_104563Ga0265358_1045632F001837LSRHRHRFEAYLDKVFGFSDLVSALPEGRQFPQHAWKKVFDAVFLGAAMQIPSLLQIEAECHHGALAQRIGPISDDTLGYSLERQSPEAVFALSCEIARRLKRNGVLRSDWSRGLVVGAVDGIEICSSFARCCDACMEREV
Ga0265358_104619Ga0265358_1046192F026633LKTIKHILSRYTAFLWALLKPLGAWGVLVVATLDGAFIGLPVDA
Ga0265358_104813Ga0265358_1048131F047963WNDPTSCRKLNNGAQTSTSDYSMRWAARCAAPGGAASSFWNPPPPTQSNNTNYFTYVDQVPQSQQQNLDYAWLQLEPTSSMIITDNRANPPRSFYITTLPLQYTYSCSLSQNVNSCQFREVFDYGVDTGVNPVDNVKHSYGWVGWRYYINATLGNPDLPAVWVLTSTSESNQL
Ga0265358_104879Ga0265358_1048793F002208TAIRSKPVRITLDLSPELYRQLTAWADSAAVTLDVPRVSLADAVRAMIRVAGDNPGDVLDRLRRDRDQ
Ga0265358_105144Ga0265358_1051442F001546TDEIRWDEKAGLRRDAVRSQVIDALKAQEIKETGNEKG
Ga0265358_105333Ga0265358_1053332F062022PPHLMFYAPNKTAKDVGYESISPTMVPHLTGSGVGPESLLVVAARKPAEDSSSGDSHKH
Ga0265358_105399Ga0265358_1053992F024210EHGPAILLSGHLQGPGAILVYRVQDYAATVAHLRARHIAVRELEIPHGPCATFTMEAGQRYAVYQLVRPDAVHQFDGRIDP
Ga0265358_105401Ga0265358_1054011F017942VDSLYRAVNSVYKVVDSPYRVVDSIYRVVDSLYRIVDSLYRVVDSISMVVDYLYRVVNSLYRVVDSLHRVVDSFYREVDSLYKVVDSLYRVMDSLYRVVDSIYIVVDYLYRVVDYLYRVVDSLY
Ga0265358_105459Ga0265358_1054592F059235VLYREMSKTKAAFLVSLSGLAAVISALGLHGWHIYLALSLIGIGLIIGFFRWTRNY

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