Metagenome / Metatranscriptome Family F098106

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098106
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	55 residues
Representative Sequence	TGNPNAQVWVDLHTALYYCPGSDLYGKTPGGKFTTQRDAQLDQFEPAARKSCD
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	92.31 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.231 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (20.192 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.41% β-sheet: 17.28% Coil/Unstructured: 75.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
g.48.1.1: Ada DNA repair protein, N-terminal domain (N-Ada 10)	d1eyfa_	1eyf	0.61165
d.252.1.1: CheC-like	d1xkra_	1xkr	0.57411
b.40.7.1: CheW-like	d1b3qa2	1b3q	0.55913
b.68.10.0: automated matches	d4g3na_	4g3n	0.53608
b.68.10.1: GyrA/ParC C-terminal domain-like	d1wp5a1	1wp5	0.52396

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00196	GerE	42.31
PF08238	Sel1	2.88
PF13380	CoA_binding_2	2.88
PF00535	Glycos_transf_2	1.92
PF01740	STAS	1.92
PF13248	zf-ribbon_3	1.92
PF01134	GIDA	0.96
PF01152	Bac_globin	0.96
PF13231	PMT_2	0.96
PF00271	Helicase_C	0.96
PF12698	ABC2_membrane_3	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.23 %
Unclassified	root	N/A	5.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.42 %
Unclassified	root	N/A	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	43.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.58 %
Unclassified	root	N/A	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.58 %
Unclassified	root	N/A	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.58 %
Unclassified	root	N/A	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.27 %
Unclassified	root	N/A	5.77 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	4.81 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.27 %
Unclassified	root	N/A	5.77 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	4.81 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	43.27 %
Unclassified	root	N/A	5.77 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	4.81 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02J1VOG	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300000567\|JGI12270J11330_10120836	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300001356\|JGI12269J14319_10017112	All Organisms → cellular organisms → Bacteria	5381	Open in IMG/M
3300002568\|C688J35102_119408236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300004082\|Ga0062384_100071805	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1760	Open in IMG/M
3300004138\|Ga0058905_1529029	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300004152\|Ga0062386_100539882	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300004479\|Ga0062595_100164679	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300005162\|Ga0066814_10050072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300005178\|Ga0066688_10261078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1110	Open in IMG/M
3300005181\|Ga0066678_10177278	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300005332\|Ga0066388_101335976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1239	Open in IMG/M
3300005332\|Ga0066388_106535867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005344\|Ga0070661_100543351	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005437\|Ga0070710_10639850	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300005540\|Ga0066697_10680423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300005541\|Ga0070733_10518635	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005541\|Ga0070733_11215176	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005558\|Ga0066698_10519709	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005574\|Ga0066694_10567361	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300005576\|Ga0066708_10006887	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5060	Open in IMG/M
3300005598\|Ga0066706_10632939	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	849	Open in IMG/M
3300005615\|Ga0070702_101098359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300006047\|Ga0075024_100373560	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300006059\|Ga0075017_100826023	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300006163\|Ga0070715_10609257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	641	Open in IMG/M
3300009012\|Ga0066710_100176119	All Organisms → cellular organisms → Bacteria	3014	Open in IMG/M
3300009090\|Ga0099827_10429221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300009137\|Ga0066709_102350584	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300009521\|Ga0116222_1057018	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300009551\|Ga0105238_10332772	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300010043\|Ga0126380_12261381	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010046\|Ga0126384_10023987	All Organisms → cellular organisms → Bacteria	3973	Open in IMG/M
3300010320\|Ga0134109_10121145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	924	Open in IMG/M
3300010358\|Ga0126370_11997476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300010896\|Ga0138111_1042639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	725	Open in IMG/M
3300011061\|Ga0138534_1089137	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300011073\|Ga0138584_1098389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300011120\|Ga0150983_16336071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300012349\|Ga0137387_11174704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300012361\|Ga0137360_11194462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300012971\|Ga0126369_10199081	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300012975\|Ga0134110_10171111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300012985\|Ga0164308_11292340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300012987\|Ga0164307_11032407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300014495\|Ga0182015_10494523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300015357\|Ga0134072_10362025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300016422\|Ga0182039_10293105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345	Open in IMG/M
3300016422\|Ga0182039_11558147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300017955\|Ga0187817_10101750	All Organisms → cellular organisms → Bacteria → Acidobacteria	1808	Open in IMG/M
3300017955\|Ga0187817_10949958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300017961\|Ga0187778_10045438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2683	Open in IMG/M
3300017961\|Ga0187778_10069344	All Organisms → cellular organisms → Bacteria	2164	Open in IMG/M
3300018007\|Ga0187805_10114087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1224	Open in IMG/M
3300018085\|Ga0187772_10256947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1188	Open in IMG/M
3300018090\|Ga0187770_11170757	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300018431\|Ga0066655_11103917	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300018433\|Ga0066667_10717514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300019260\|Ga0181506_1436558	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300019278\|Ga0187800_1852516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300019887\|Ga0193729_1094193	All Organisms → cellular organisms → Bacteria → Acidobacteria	1150	Open in IMG/M
3300020581\|Ga0210399_10969710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300021046\|Ga0215015_11026970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3519	Open in IMG/M
3300021170\|Ga0210400_10877994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300021178\|Ga0210408_10767838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300021401\|Ga0210393_10320040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1261	Open in IMG/M
3300021406\|Ga0210386_11150969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300021420\|Ga0210394_11816007	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300021439\|Ga0213879_10069798	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300022504\|Ga0242642_1079798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300022523\|Ga0242663_1031653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	856	Open in IMG/M
3300022528\|Ga0242669_1025838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300022531\|Ga0242660_1219992	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300022722\|Ga0242657_1012829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1461	Open in IMG/M
3300022724\|Ga0242665_10359210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300022732\|Ga0224569_106701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300022840\|Ga0224549_1006891	All Organisms → cellular organisms → Bacteria → Acidobacteria	1718	Open in IMG/M
3300026095\|Ga0207676_10742248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300026328\|Ga0209802_1163270	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300026333\|Ga0209158_1211736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	672	Open in IMG/M
3300027297\|Ga0208241_1058600	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300027648\|Ga0209420_1084774	All Organisms → cellular organisms → Bacteria → Acidobacteria	912	Open in IMG/M
3300027729\|Ga0209248_10021601	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300027862\|Ga0209701_10450444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300027867\|Ga0209167_10384547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300027889\|Ga0209380_10479340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300028010\|Ga0265358_102583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300028560\|Ga0302144_10148961	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M
3300028572\|Ga0302152_10241038	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300030706\|Ga0310039_10195837	All Organisms → cellular organisms → Bacteria → Acidobacteria	798	Open in IMG/M
3300031744\|Ga0306918_10628482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	841	Open in IMG/M
3300031820\|Ga0307473_10262689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300031938\|Ga0308175_101199290	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300032421\|Ga0310812_10189623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300032783\|Ga0335079_10211395	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300032783\|Ga0335079_10670856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300032783\|Ga0335079_11173282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300032893\|Ga0335069_11437235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.65%
Aquatic	Environmental → Aquatic	9.62%
Plants	Host-Associated → Plants	6.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.77%
Freshwater	Environmental → Aquatic → Freshwater	6.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.81%
Sediment	Environmental → Aquatic → Sediment	2.88%
Peat	Environmental → Terrestrial → Peat	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.58%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004138	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF246 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010896	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011061	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011073	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028010	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6	Host-Associated	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_01801710	2170459010	Grass Soil	PPSDRSAASKGNPETQVWIDVHTALYYCPGTELYGKTADGKLSTQKNAQDEYFEPANRAACP
JGI12270J11330_101208363	3300000567	Peatlands Soil	YNGNPNVSVWVDLHTALYYCPGADLYGKTPDGKFTSQRDAQMDHFEPAARKNCD*
JGI12269J14319_100171127	3300001356	Peatlands Soil	VYLGNPNAQVWVDLHTALYYCSDSDLYGKTPGGKFTTQRDAQLDQFEPAARKNCD*
C688J35102_1194082361	3300002568	Soil	PAPVNLGNPNTQVWVDVHTALYYCSDSELYGKTADGKFTSQKDAQQDQFEPANRKACP*
Ga0062384_1000718053	3300004082	Bog Forest Soil	GNPYTQVWVDLQTALYYCPGSDLYEKTPKGKLTTQRDAQMDQFEPANRRACE*
Ga0058905_15290292	3300004138	Forest Soil	PDVQVWVDVHTALYYCPGSDLYGKTPGGKFATQADAQMDHFEPATGALCE*
Ga0062386_1005398823	3300004152	Bog Forest Soil	PTPVYLGNPNAQVWVDLRHALYYCSGSDQYGKTPEGKFTTQREAQMDQFEPAARKNCD*
Ga0062595_1001646792	3300004479	Soil	VDMGNPETQVWVDVHTALYYCPGGDLYGKTADGKFSSQRDAQQDQFRPAKGKACP*
Ga0066814_100500722	3300005162	Soil	DMGNPETQVWVDVHTALYYCPGGDLYGKTADGKFSSQRDAQQDQFRPAKGKACP*
Ga0066688_102610781	3300005178	Soil	PPPVYNGSPDTKVWVDLQTGLYYCSGSDPYGNTPKGKFTSQRDAQMDQFEPAYRKACD*
Ga0066678_101772782	3300005181	Soil	TYVGNPQTQVWVDLHTALYYCPGSDLYGKTEGGKLTTQRDAQQDQFEPASRRACD*
Ga0066388_1013359762	3300005332	Tropical Forest Soil	APTDMGNPNVPVWVDVHTALYYCPGSELYGKTPQGRIASQKDAQADQFEPASRKVCD*
Ga0066388_1065358672	3300005332	Tropical Forest Soil	VSAGKAEIRVWEDVHTALYYCPNSELYGKTPGGRFSTQRAAQQDQFEPATRIACE*
Ga0068868_1000562441	3300005338	Miscanthus Rhizosphere	TPDTPAPQPGNPNTKVWVDVHTALYYCPGADLYGKTADGKYTSQLDAQRDNFRPSTLKACD*
Ga0070661_1005433511	3300005344	Corn Rhizosphere	GNPNTQVWVDVHTALYYCSDSELYGKTADGKFTSQKDAQQDQFEPANRKACP*
Ga0070710_106398502	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PEAKVWVDLHTALYYCQGTDPYGKTPGGKFVTQLEAQQDQFEPAFRKACD*
Ga0066697_106804231	3300005540	Soil	PEYTGNPQTKVWVDLNTALYYCQGAEFYGKTPKGKFATQQDALQDQFEPAGRKPCE*
Ga0070733_105186352	3300005541	Surface Soil	GNPNAQVWVDLRHALYYCPGSELYGKTAEGKFTTQRDAQMDQFEPAARKNCD*
Ga0070733_112151761	3300005541	Surface Soil	ETPPTPVYLGNPNAQVWVDLHTALYYCADSDLYGKTPGGKFTTQRDAQLDQFEPAARKDCE*
Ga0066698_105197092	3300005558	Soil	TPVFAGSPDVRVWVDVHTALYYCQGSDLYGKTPGGHFATQHEAQQDEFEPATRVACP*
Ga0066694_105673611	3300005574	Soil	PEMPAFSGNPDSKVWVDVHTALYYCPGSELYGKTPGGRFTTQKDAQQDQFEPARRKACE*
Ga0066708_100068871	3300005576	Soil	WVDVHTALYYCQGSDLYGKTPGGHSATQREAQQDEFEPATRVACP*
Ga0066706_106329392	3300005598	Soil	VWEDVHTALYYCPDSDLYGKTPGGRFSTQRAAQEDQFEPATRVACQ*
Ga0070702_1010983591	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VSLGLAEAPPPPVDMGNPETQVWVDVHTALYYCPGGDLYGKTADGKFSSQRDAQQDQFRPAKGKACP*
Ga0075024_1003735601	3300006047	Watersheds	GNPNIPVWVDVHTAQYYCPGSELYGKTPQGRIASQHDAQMDQFEPASRKVCD*
Ga0075017_1008260232	3300006059	Watersheds	TGNPNIPVWVDVHTAQYYCPGSDQYGKTPQGRIASQHDAQMDQFEPAQHKVCD*
Ga0070715_106092571	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RVWEDVHTALYYCPDSDLYGKTPGGRFSTQRAAQDDQFESATRVACQ*
Ga0066710_1001761195	3300009012	Grasslands Soil	PDYRGNPDARVWVDVHTALYYCTGADLYGKTPGGKYASQHDAQLDQFEPESRKACD
Ga0099827_104292211	3300009090	Vadose Zone Soil	IGNPRVRVWVDVHTALYYCPGSDLYGKTPGGQFESQRSAQQDQFEPATGTVCE*
Ga0066709_1023505842	3300009137	Grasslands Soil	PPPIYNGNPDSSVWVDLHTAFCYCPGADAYGKTRQGKFARQRNAQLDHFESASRKACD*
Ga0116222_10570181	3300009521	Peatlands Soil	EAPTVPVYNGNPNVSVWVDLHTALYYCPGADLYGKTPDGKFTSQRDAQMDHFEPAARKNCD*
Ga0105238_103327722	3300009551	Corn Rhizosphere	PAPVNLGNPNTQVWVDVHTALYYCSDSELYGKTADGKFTNQKDAQQDQFEPANRKACP*
Ga0126380_122613812	3300010043	Tropical Forest Soil	GNPDAQVWVDLHTALYYCQGSDLYGKTPGGHFATQHQAQQDEFEPATRVPCP*
Ga0126384_100239871	3300010046	Tropical Forest Soil	GNPQTKVWVDLSTALYYCQGSEFYGKTPKGKFTSQQDAQQDQFEPAGRKPCD*
Ga0134109_101211451	3300010320	Grasslands Soil	GSPDVRVWVDVHTALYYCQGSDLYGKTPGGHFATQHEAQQDEFEPATRVACP*
Ga0126370_119974761	3300010358	Tropical Forest Soil	VFAGNPSVRVWEDVHTALYYCPDSDLYGKTPGGRFSTQRSAQEDQFEPATRVACQ*
Ga0138111_10426392	3300010896	Grasslands Soil	SAHTGAPDIRVWVDVHTALYYCPGSDLYGKTPGGHFSTQRAAQEDQFEPATRATCE*
Ga0138534_10891371	3300011061	Peatlands Soil	VYLGNPNAQVWVDLHTAQYYCSDSELYGKTAGGKFTTQRDAQMDQFEPAARKNCD*
Ga0138584_10983892	3300011073	Peatlands Soil	PVYLGNPNAQVWVDLHTAQYYCSDSELYGKTAGGKFTTQRDAQMDQFEPAARKNCD*
Ga0150983_163360712	3300011120	Forest Soil	GNPNAQVWVDLHTALYYCANSELYGKTPGGKFTTQRDAQLDQFEPAARKNCD*
Ga0137387_111747041	3300012349	Vadose Zone Soil	GAPDIRVWVDVHTALYYCPGSDLYGKTPGGHFSTQRAAQEDQFEPATRATCE*
Ga0137371_105128942	3300012356	Vadose Zone Soil	PIYQGNPNARVWVDVQSALYYCPGVRLYGKTKGGRFTTQQKAQQEQFDPADHKACP*
Ga0137360_111944621	3300012361	Vadose Zone Soil	ASLTYVGNPQTQVWVDVHTALYYCPGADLYGKTEGGKLTTQKDAQQDQFEPALRRACD*
Ga0134024_11675291	3300012404	Grasslands Soil	VHTALYYCPGSDLYGKTPGGHFSTQRAAQEDQFEPATRATCE*
Ga0126369_101990811	3300012971	Tropical Forest Soil	VPSYSGNPNVPVWIDVHTALYYCPGADLYGKTQQGRIASQHDAQLDQFEPASRKVCD*
Ga0134110_101711111	3300012975	Grasslands Soil	PAHTPVFAGSPDVRVWVDVHTALYYCQGSDLYGKTPGGHFATQREAQQDEFEPATRVACP
Ga0164308_112923401	3300012985	Soil	PVDMGNPETQVWVDVHTALYYCPGGDLYGKTADGKFSSQRDAQQDQFRPAKGKACP*
Ga0164307_110324072	3300012987	Soil	VNLGNPNTQVWVDVHTALYYCSDSELYGKTADGKFTSQKDAQQDQFEPANRKACP*
Ga0157371_112900971	3300013102	Corn Rhizosphere	PTPDTPAPQPGNPNTKVWVDVHTALYYCPGADLYGKTADGKYTSQLDAQRDNFRPSTLKACD*
Ga0182015_104945232	3300014495	Palsa	LGNPQTQVWVDVHTALYYCPGADLYGKTPGGKVTSQSDAQQDQFEPAARRPCN*
Ga0134072_103620252	3300015357	Grasslands Soil	PAFSGNPDSKVWVDVHTALYYCPGSELYGKTPGGRFTTQKDAQQDQFEPARRKACE*
Ga0182039_102931051	3300016422	Soil	PSYIGNPNVPVWVDVHTALYYCPGSELYGKTPQGRIASQRDAQMDQFEPASRKVCD
Ga0182039_115581471	3300016422	Soil	GNPTVQVWVDLHTAQYYCPGADLYGKTPTGKFATQREAQMDQFEPAYRKPCN
Ga0187817_101017503	3300017955	Freshwater Sediment	VYLGNPNVRVWVDLHTALYYCPGSELYGKTPGGKFTTQRDAQMDQFEPAARKNCE
Ga0187817_109499581	3300017955	Freshwater Sediment	MLKGNPNARVWVDLHTALYYCSGSESYGKTPDGRVATQRDAQLDQFEPAARNYCQ
Ga0187778_100454381	3300017961	Tropical Peatland	VWVDVHTALYYCQGSELYGKTPGGKVTTQRDAQLDQFEPAARKNCE
Ga0187778_100693441	3300017961	Tropical Peatland	TPVYSGNPNAQVWEDLHTGLYYCAGSELYGKTAKGKLETQRDAQLDQFEPALRKVCE
Ga0187805_101140871	3300018007	Freshwater Sediment	TGNPNAQVWVDLHTALYYCPGSDLYGKTPGGKFTTQRDAQLDQFEPAARKSCD
Ga0187772_102569471	3300018085	Tropical Peatland	PAPRGDPAVQVWVDQHTALYYCPGAELYGKTADGRYTTQRDAQLDQFEPAARAYCQ
Ga0187770_111707571	3300018090	Tropical Peatland	VSGNPSVQVWEDLHTALYYCAGSELYGKTPDGKFTTQRDAQLDQFEPATRKSCQ
Ga0066655_111039171	3300018431	Grasslands Soil	RVWEDVHTALYYCPDSDLYGKTPGGRFSTQRAAQEDQFEPATRVACQ
Ga0066667_107175142	3300018433	Grasslands Soil	RVWVDVHTALYYCQGSDLYGKTPGGHFATQREAQQDEFEPATRVACP
Ga0181506_14365581	3300019260	Peatland	EPPPPAPVYAGNPAIQVWEDLHTAIYYCPGSELYGKTSSGKFVPQRTAQQDQFEPANRKACD
Ga0187800_18525161	3300019278	Peatland	APVYLGNPNVRVWVDVHTALYYCPGSELYGKTPGGKFTTQRDAQMDQFEPAARRNCE
Ga0193729_10941932	3300019887	Soil	PSPNYVGNPQTQVWVDLHTALYYCPGADLYGKTEGGKLTTQRDAQQDQFEPASRKACD
Ga0210399_109697101	3300020581	Soil	LAEPPPAPVDMGNPNAQVWVDVHTALYYCSGSDLYGKTADGKFTTQRDAQQDQFEPSNRKACP
Ga0215015_110269701	3300021046	Soil	AAPTGNPRVRVWVDVHTALYYCPGSDLYGKTPGGQFESQRSAQQDQFEPATGTVCE
Ga0210400_108779942	3300021170	Soil	TYLGNPNAPVWVDLHTALYYCSGSDLYGKTAGGKFTTQRDAQLDQFEPAARKTCD
Ga0210408_107678381	3300021178	Soil	YLGNPNAQVWVDLRHALYYCPGSDLYGKTPEGKFTTQRDAQMDQFEPAARKNCD
Ga0210393_103200401	3300021401	Soil	KGNPNTQVWIDPHTALYYCPGSELYGKTAKGKFASQQDAQLDQFEPASRRACN
Ga0210386_111509691	3300021406	Soil	AQVWVDLRHALYYCSGSDQYGKTPGGKFTTQREAQMDQFEPAARKNCD
Ga0210394_118160072	3300021420	Soil	NPNALVWVDLHTALYYCQGSELFGKTSGGKQTTQQDAQLDSFGPAAGKNCE
Ga0213879_100697981	3300021439	Bulk Soil	GVADAPATPAPSGNPNVNVWEDLHTGLYYCPGADLYGKTAGGKLTNQRDAQLDQFEPAARRACD
Ga0242642_10797982	3300022504	Soil	GNPNAQVWVDLHTALYYCSDSDLYGKTPGGKFTTQRDAQLDQFEPAARKDCD
Ga0242663_10316531	3300022523	Soil	PAPVYLGNPNASVWVDMKHALYYCSDSDLYGKTPGGKYTTQRDAQLDQFEPAARKNCD
Ga0242669_10258381	3300022528	Soil	NAQVWVDRRHALYYCAGSDLYGKTPEGKFTTQREAQMDQFEPAARKNCD
Ga0242660_12199922	3300022531	Soil	IPVYLGNPNARVWVDLHTALYYCSGSDLYGKTPGGKFTTQRDAQLDQFEPAARKNCD
Ga0242657_10128291	3300022722	Soil	APTYLGNPNAPVWVDLHTALYYCSGSDLYGKTPGGKFTTQRDAQLDQFEPAARKTCD
Ga0242665_103592102	3300022724	Soil	YLGNPNASVWVDMKHALYYCSDSDLYGKTPGGKYTTQRDAQLDQFEPAARKNCD
Ga0224569_1067011	3300022732	Rhizosphere	EYKGNPDTQVWIDLHTALYYCPDTDLYGKTPQGKFASQRDAQLDQFEPGYRKACD
Ga0224549_10068911	3300022840	Soil	NPDTQVWVDLHTALYYCPGSELYGKTAKGKLSTQRQAQLDQFEPASRKACD
Ga0207676_107422482	3300026095	Switchgrass Rhizosphere	PPPPVDMGNPETQVWVDVHTALYYCPGGDLYGKTADGKFSSQRDAQQDQFRPAKGKACP
Ga0209802_11632702	3300026328	Soil	EPPPAPVYLGNPSTQVWVDLHTALYYCPGSALYGKTQGGKFTTQRDAQQDQFEPANRKAC
Ga0209267_11777952	3300026331	Soil	EPPQAPSYSGNPNIPVWVDVHTALYYCPGSDLYGKTPQGKIASQHDAQLDQFEPASRKVC
Ga0209158_12117361	3300026333	Soil	RPAIVYAGSPNVRVWEDVHTALYYCPDSDLYGKTPGGRFSTQRAAQEDQFEPATRVACQ
Ga0208241_10586002	3300027297	Forest Soil	EPPPAPIYLGNPDTQVWVDLHTALYYCAGSQLYGKTPGGKMTTQRDAQQDQFEPANRRVC
Ga0209420_10847743	3300027648	Forest Soil	NPNVWVWVDVHTALYYCPGSELYGKTEGGKFALQREAQLDQFQPAARKNCE
Ga0209248_100216011	3300027729	Bog Forest Soil	VYLGNPNASVWVDMKHALYYCSDSDHYGKTPGGKFTTQRDAQLDQFEPAARKNCD
Ga0209701_104504442	3300027862	Vadose Zone Soil	DTKVWVDLHTALYYCPDADLYGKTPGGKFTNQRDAQLDQFEPAYRKACD
Ga0209167_103845472	3300027867	Surface Soil	PTPVYLGNPNAQVWVDLRHALYYCPGSELYGKTAEGKFTTQRDAQMDQFEPAARKNCD
Ga0209380_104793402	3300027889	Soil	PDAPEYKGNPYIQVWVDLQTALYYCPGSDLYEKTPKGKLTTQRDAQQDQFEPANRTACE
Ga0209583_103135431	3300027910	Watersheds	VVYQGNPGTQVWVDTRTALYYCPGEELYGKTDGGKMSTQRDAQLDQFEPAARKPCN
Ga0265358_1025831	3300028010	Rhizosphere	VYLGNPNAQVWVDLRHALYYCSGSDLYGKTPDGKFTTQRDAQMDQFEPAARKNCD
Ga0302144_101489612	3300028560	Bog	YKGNPDTQVWIDTHTALYYCPGSELYGNTPRGKYATQRDAQLDQFESASRKPCD
Ga0302152_102410382	3300028572	Bog	LAEPPPPAPVYAGNPAIQVWEDLHTAIYYCPGSELYGKTSSGKFVPQRTAQQDQFEPANRKACD
Ga0310039_101958371	3300030706	Peatlands Soil	PVYNGNPNVSVWVDLHTALYYCPGADLYGKTPDGKFTSQRDAQMDHFEPAARKNCD
Ga0306918_106284821	3300031744	Soil	APVFRGNPAVQVWVDQHTALYHCPGTELYGKTPDGRFTTQRDALLDQFEPAARAYCR
Ga0307473_102626892	3300031820	Hardwood Forest Soil	TGNPNIPVWVDVHTALYYCPGSDLYGKTPQGKIASQHDAQMDQFEPASRKVCD
Ga0308175_1011992901	3300031938	Soil	APAYLGNPDAKVWVDLHTALYYCQGSDPYGKTPGGKFATQLEAQQDSFEPAFRKACE
Ga0310812_101896232	3300032421	Soil	PARAPALSGNPDVRVWVDVHTALYYCPGSDLYGMTPGGHFASQHDAQVDEFEPASRIACP
Ga0335079_102113954	3300032783	Soil	LAEPPDAPAYMGDPNAKVWVDLHTALYYCPGAELYGKTAGGKFTTQRDAQQDQFQPASRKVCE
Ga0335079_106708562	3300032783	Soil	GNPNVQVWVDLHTALYYCPGSDLYGKTPGGKYTTQRDAQLDQFEPAARKNCE
Ga0335079_111732822	3300032783	Soil	NTQVWVDLHTALYYCPGADLYGKTPGGKFTTQRDAQLDQFEPAARKSCD
Ga0335069_114372352	3300032893	Soil	NPNTQVWVDHQTALYYCPGAELYGKTPKGEFTSQRNAQMDQFEPAARKACN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098106

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences