Metagenome / Metatranscriptome Family F088998

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088998
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	LLHLGTLLAAKLWQATGWSVSTPPTILAWDWTAIRRILPLEASSP
Number of Associated Samples	101
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	64.22 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (17.431 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.62% β-sheet: 0.00% Coil/Unstructured: 64.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01807	zf-CHC2	33.03
PF08275	Toprim_N	16.51
PF13155	Toprim_2	13.76
PF13662	Toprim_4	3.67
PF00589	Phage_integrase	3.67
PF02899	Phage_int_SAM_1	2.75
PF04390	LptE	0.92
PF01649	Ribosomal_S20p	0.92
PF00119	ATP-synt_A	0.92
PF00768	Peptidase_S11	0.92
PF02666	PS_Dcarbxylase	0.92
PF07927	HicA_toxin	0.92
PF08530	PepX_C	0.92
PF08240	ADH_N	0.92
PF01695	IstB_IS21	0.92
PF13362	Toprim_3	0.92
PF02817	E3_binding	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	49.54
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	2.75
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	2.75
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.92
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	0.92
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.92
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.92
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.92
COG2936	Predicted acyl esterase	General function prediction only [R]	0.92
COG2980	Outer membrane lipoprotein LptE/RlpB (LPS assembly)	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	86.24 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	80.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.73 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.92 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.73 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.92 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.73 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.92 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.73 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.92 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.92 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.73 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.92 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.92 %
Unclassified	root	N/A	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000733\|JGI12408J11912_1000580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4000	Open in IMG/M
3300001083\|JGI12678J13193_1004384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300002568\|C688J35102_118277824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300005186\|Ga0066676_10227859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1208	Open in IMG/M
3300005332\|Ga0066388_100884783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1474	Open in IMG/M
3300005451\|Ga0066681_10890147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300005533\|Ga0070734_10177520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1231	Open in IMG/M
3300005556\|Ga0066707_10116200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1662	Open in IMG/M
3300005764\|Ga0066903_102161958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1072	Open in IMG/M
3300005937\|Ga0081455_10800390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300006059\|Ga0075017_100091400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2108	Open in IMG/M
3300006102\|Ga0075015_100251685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300006354\|Ga0075021_10017539	All Organisms → cellular organisms → Bacteria	3971	Open in IMG/M
3300006755\|Ga0079222_11609282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300006844\|Ga0075428_100933307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300006845\|Ga0075421_101343999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300006904\|Ga0075424_102364796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300009012\|Ga0066710_100508483	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300009167\|Ga0113563_12664180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300009522\|Ga0116218_1021584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2865	Open in IMG/M
3300009524\|Ga0116225_1485736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300009552\|Ga0116138_1180890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300009632\|Ga0116102_1201236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300009639\|Ga0116122_1070030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1162	Open in IMG/M
3300009644\|Ga0116121_1139087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300009665\|Ga0116135_1016601	All Organisms → cellular organisms → Bacteria → Acidobacteria	2557	Open in IMG/M
3300010048\|Ga0126373_11959568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300010361\|Ga0126378_10096898	All Organisms → cellular organisms → Bacteria → Acidobacteria	2901	Open in IMG/M
3300010361\|Ga0126378_11034916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300010362\|Ga0126377_12489067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300010366\|Ga0126379_10890036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300010373\|Ga0134128_10436779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1461	Open in IMG/M
3300010375\|Ga0105239_10903304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300010376\|Ga0126381_100052687	All Organisms → cellular organisms → Bacteria	4990	Open in IMG/M
3300010376\|Ga0126381_104941629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300010379\|Ga0136449_100019223	All Organisms → cellular organisms → Bacteria	17601	Open in IMG/M
3300011269\|Ga0137392_10238717	All Organisms → cellular organisms → Bacteria → Acidobacteria	1494	Open in IMG/M
3300011271\|Ga0137393_11304545	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012189\|Ga0137388_11349603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300012202\|Ga0137363_10872634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300012209\|Ga0137379_10800743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300012209\|Ga0137379_11166870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300012210\|Ga0137378_11293733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300012357\|Ga0137384_10437114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1078	Open in IMG/M
3300012359\|Ga0137385_11212967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300012923\|Ga0137359_10055082	All Organisms → cellular organisms → Bacteria	3461	Open in IMG/M
3300012923\|Ga0137359_10804475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300012944\|Ga0137410_11657942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300014326\|Ga0157380_10567966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300014838\|Ga0182030_10198236	All Organisms → cellular organisms → Bacteria	2410	Open in IMG/M
3300016294\|Ga0182041_10779513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300016422\|Ga0182039_10194717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1612	Open in IMG/M
3300017789\|Ga0136617_10842040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300017940\|Ga0187853_10536262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300017961\|Ga0187778_11094080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300018030\|Ga0187869_10065784	All Organisms → cellular organisms → Bacteria → Acidobacteria	1880	Open in IMG/M
3300018033\|Ga0187867_10341877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300018037\|Ga0187883_10455159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300018038\|Ga0187855_10028886	All Organisms → cellular organisms → Bacteria	3561	Open in IMG/M
3300018043\|Ga0187887_10821260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300018060\|Ga0187765_10610650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300019786\|Ga0182025_1231612	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300021168\|Ga0210406_10068430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3059	Open in IMG/M
3300021171\|Ga0210405_10650249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300021171\|Ga0210405_10876917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300021420\|Ga0210394_11531528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300021478\|Ga0210402_10864346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	831	Open in IMG/M
3300021559\|Ga0210409_10065266	All Organisms → cellular organisms → Bacteria	3393	Open in IMG/M
3300021861\|Ga0213853_10989160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300021861\|Ga0213853_11310758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1625	Open in IMG/M
3300022557\|Ga0212123_10733386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300022756\|Ga0222622_10272113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1156	Open in IMG/M
3300024288\|Ga0179589_10581372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300025906\|Ga0207699_11063894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300025915\|Ga0207693_11356269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300027570\|Ga0208043_1030892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1653	Open in IMG/M
3300027583\|Ga0209527_1000612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	7629	Open in IMG/M
3300027853\|Ga0209274_10413862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300027854\|Ga0209517_10000180	All Organisms → cellular organisms → Bacteria	113506	Open in IMG/M
3300027874\|Ga0209465_10410420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300027911\|Ga0209698_10028814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5114	Open in IMG/M
3300027911\|Ga0209698_10197378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1629	Open in IMG/M
3300027911\|Ga0209698_10455847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	994	Open in IMG/M
3300028010\|Ga0265358_100004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3312	Open in IMG/M
3300030524\|Ga0311357_11670815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300030617\|Ga0311356_10997483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300030693\|Ga0302313_10314435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300030706\|Ga0310039_10002386	All Organisms → cellular organisms → Bacteria	12555	Open in IMG/M
3300031057\|Ga0170834_105676427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300031128\|Ga0170823_12741488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300031236\|Ga0302324_100442487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1920	Open in IMG/M
3300031446\|Ga0170820_16468808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300031524\|Ga0302320_12127122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300031544\|Ga0318534_10776141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031736\|Ga0318501_10136161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300031753\|Ga0307477_10250817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1226	Open in IMG/M
3300031754\|Ga0307475_11387435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300031777\|Ga0318543_10238304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300031945\|Ga0310913_10858166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300031954\|Ga0306926_12057931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300032025\|Ga0318507_10140708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300032044\|Ga0318558_10235012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300032076\|Ga0306924_11953894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300032160\|Ga0311301_10028700	All Organisms → cellular organisms → Bacteria	14647	Open in IMG/M
3300032174\|Ga0307470_11679760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300032805\|Ga0335078_10360384	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300033158\|Ga0335077_11304200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300034354\|Ga0364943_0175677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.58%
Host-Associated	Host-Associated	6.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.48%
Aquatic	Environmental → Aquatic	21.10%
Plants	Host-Associated → Plants	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.97%
Freshwater	Environmental → Aquatic → Freshwater	13.76%
Sediment	Environmental → Aquatic → Sediment	6.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.50%
Peat	Environmental → Terrestrial → Peat	4.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.29%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.01%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Ice	Environmental → Aquatic → Freshwater → Ice	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300001083	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028010	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6	Host-Associated	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12408J11912_10005804	3300000733	Tropical Forest Soil	MGTLLAARLWQAVGWSAATSPTILAWDWTAIRRILPIEARSP*
JGI12678J13193_10043841	3300001083	Forest Soil	DPSTVRRWAGRLLQLGTLLGAKLWQATSWSASTPPTILAWDWTAIRCILPIEARSP*
C688J35102_1182778241	3300002568	Soil	DPSTVRRWAGRLLHVGTLVAAKLRQATGWSASAFPTILAWDWTTIRHILLIEARSP*
Ga0066676_102278591	3300005186	Soil	VRRWAGRLLHWGALLAAKLWQATGWSASMTPTILAWDWTAIRRILPLEARSP*
Ga0066388_1008847832	3300005332	Tropical Forest Soil	LLQLGTLVTVKLWEAVNWSPAMPPTILAWDWTAIRRILPMEANSP*
Ga0066681_108901472	3300005451	Soil	ALLAAKLWQATGWSASTPPTILAWDWTAIRRILPIEARSP*
Ga0070734_101775203	3300005533	Surface Soil	LLHLGTLLVAKLWQATGWGVSTAPTILAWDWTAIRRILPLEASSP*
Ga0066707_101162002	3300005556	Soil	MAAKLWQATGWTASTFPTILAWDWTAIRRILPLEARSP*
Ga0066903_1021619583	3300005764	Tropical Forest Soil	VRRWAGRLVHVGTLLATKLWQAAGWSAAMFPTILAWDWTAIRRILPIEARSP*
Ga0081455_108003901	3300005937	Tabebuia Heterophylla Rhizosphere	STVRRWAGRLLQVGTLLAAKLWQAAGWSAAISPTILAWDWTAVRRILPIEARSP*
Ga0075017_1000914004	3300006059	Watersheds	LLDLGTLLAVKLWQATGWSAATPPTILAWDWDAIRRILPIEASSP*
Ga0075015_1002516852	3300006102	Watersheds	LLHLGTLLAAKLWQAVGWSVSISPTILAWDWTAIRRILLLEASSP*
Ga0075021_100175394	3300006354	Watersheds	VRRWAGRLLQVGILLATKLWQAAGWSAAMSPTILAWDWTAIRRILPIEARSP*
Ga0079222_116092821	3300006755	Agricultural Soil	VRRWAGRLLHVGSLLAAKLWQAVGCSAALSPTILAWDWTAIRRIL
Ga0075428_1009333072	3300006844	Populus Rhizosphere	WARRLLHVGTLLAAKLWQAAGWNAATSPTILAWDWTTIRRILPIEARSP*
Ga0075421_1013439992	3300006845	Populus Rhizosphere	VGTLLAAKLWQAAGWNAATSPTILAWDWTTIRRILPIEARSP*
Ga0075424_1023647962	3300006904	Populus Rhizosphere	RWAGRLLNLGTLLMAKLWQAIHWRASMPPTILAWDWTAIRRILPLEAKSP*
Ga0066710_1005084831	3300009012	Grasslands Soil	AGRLLNLGTLLMAKLWQATNWSASLPPTILAWDWTAIRRILPLEAKSP
Ga0113563_126641802	3300009167	Freshwater Wetlands	AWRLLQLGALLGAKLWQATGWSASTPPTILAWDWSAIRRILPIEARSP*
Ga0116218_10215841	3300009522	Peatlands Soil	LLHLGTLLAAKLWQATGWSVSTPPTILAWDWTAIRRILPLEASSP*
Ga0116225_14857361	3300009524	Peatlands Soil	LLAAKLWQAAGGSLSISPTILAWDWTAIRRILLLEASSP*
Ga0116138_11808901	3300009552	Peatland	LGTLLAAKLWQATGFSSSTPPTILAWDWAAIHRILPSEASSP*
Ga0116102_12012361	3300009632	Peatland	GRLLHLGTLLATKLWQTIGWSVSMVPTILAWDWTAIRRILLLEASSP*
Ga0116122_10700302	3300009639	Peatland	LLHLGTLLAITLWQAAGWSVSISPTILAWDWTAIRRILLLEASSP*
Ga0116121_11390872	3300009644	Peatland	LLHLGTLLAAKLWQATGWSVSISPTILAWDWTAIRRILLLEASSP*
Ga0116135_10166014	3300009665	Peatland	LLHLGTLLAAKLWQAAGWSISISPTILAWDWTAIRRILLLEASSP*
Ga0126373_119595681	3300010048	Tropical Forest Soil	VGTLLATKLWQAAGWSAAMSPTILAWDRTTIRRILPIEASSP*
Ga0126378_100968981	3300010361	Tropical Forest Soil	RLLHVATLLATKLWQAAGWSAAISPTILAWDWITIGRILPIEARSP*
Ga0126378_110349162	3300010361	Tropical Forest Soil	GLLLHVGILLATKLWQAAGWSAATLPTILAWDWNAIRRILPIEARSP*
Ga0126377_124890672	3300010362	Tropical Forest Soil	MGTLLATKLWQAVDWNVSILPTMLAWDWTALRRILLLEASSP*
Ga0126379_108900362	3300010366	Tropical Forest Soil	LHLAALLAAMLWQATGWSVAISPTILAWDWNAIRRILPIEARSP*
Ga0134128_104367792	3300010373	Terrestrial Soil	MGTLLATKLWQAVDWNFSISPTILTWDWTVVRRILLSEASSP*
Ga0105239_109033041	3300010375	Corn Rhizosphere	KFWQAAGWSAATSPTILAWDWTAIRRILPIEARGP*
Ga0126381_1000526875	3300010376	Tropical Forest Soil	VTVKLWEAVNWSPAMPPTILAWDWTAIRRILPMEANSP*
Ga0126381_1049416292	3300010376	Tropical Forest Soil	MGTLLATKLWQAVDWNVSISPTILAWDWTALRRILLLEASSP*
Ga0136449_1000192234	3300010379	Peatlands Soil	LLHLGTLLAAKLWQAAGWSVSISPTILAWDWTAIRRILLLEASSP*
Ga0137392_102387173	3300011269	Vadose Zone Soil	GTLLAAKLWQTTGWSVSTSPTILAWDWTAIRRILPLEARSP*
Ga0137393_113045452	3300011271	Vadose Zone Soil	GRLLHWAALLAAKLWQATGWSASTPPTILAWDWTAIRRILPLEARSP*
Ga0137388_113496032	3300012189	Vadose Zone Soil	RSPDPSTVRQWAGRLVHLGALLAAKLWQATDWSASTPPTILAWDWTAIRRILPLEARSP*
Ga0137363_108726342	3300012202	Vadose Zone Soil	MRLGTLLVAKLWQATHWSASTSPTILAWDWTAIRRILPLEARSP*
Ga0137379_108007431	3300012209	Vadose Zone Soil	LLNLGTLLMAKLWQAINWRASMPPTILAWDWTAIRR
Ga0137379_111668702	3300012209	Vadose Zone Soil	WAGRLLNLGTLLMAKLWQAINWRASMPPTILAWDWTAIRRILPLEAKSP*
Ga0137378_112937332	3300012210	Vadose Zone Soil	LLAAKLWQASGWSVSTSPTILAWDWIAVRRILPLEARSP*
Ga0137384_104371141	3300012357	Vadose Zone Soil	LLNLGTLLMAKLWQAINWRASMPPTILAWDWTAIRRILPLEAKSP*
Ga0137385_112129671	3300012359	Vadose Zone Soil	LLHLGTLLAAQLWQTTGWSVSTLPTILAWDWTAIRRILPWEASSP*
Ga0137359_100550825	3300012923	Vadose Zone Soil	LLNLGTLLMAKLWQATNWSASLPPTILAWDWTAIRRILPLEAKSP*
Ga0137359_108044751	3300012923	Vadose Zone Soil	MRLGTLLVAKLWQATNWSASTSPTFLAWDWTAIRRILPLEAKSP*
Ga0137410_116579421	3300012944	Vadose Zone Soil	VRRWAGRLLLWSTLVSAKLWQATGCSTSTFPTILAWDWTAI
Ga0157380_105679661	3300014326	Switchgrass Rhizosphere	AARLLHVGTLLAAKFWQAAGWSAALPPTILAWDWTAIRRILPIEARSP*
Ga0182030_101982362	3300014838	Bog	MHLGTLLTVKLWKAADWRASNPPTILAWDWDAIRRILPLEARSP*
Ga0182041_107795132	3300016294	Soil	VRRWAGRLVHVGTLLATKLWPAAGWSAEMFPTILAWDWTANRLILPIEARSP
Ga0182040_107449622	3300016387	Soil	QLFCLWILLAAKLWQSTGCSIFSPSTILAWDWSAIRLILPVEVNSP
Ga0182039_101947173	3300016422	Soil	RWAGRLLHVGSLLTAKLWQAAGWSAAMSHTIVAWDWTTIRRILPIEARSP
Ga0136617_108420401	3300017789	Polar Desert Sand	LLQLGSLLAAKFWQAAGWSASVSPTILAWDWISIRRILPIEARSP
Ga0187853_105362621	3300017940	Peatland	HLGTLLAAKLWQATGFSSSTPPTILAWDWAAIHRILPSEASSP
Ga0187778_110940802	3300017961	Tropical Peatland	TLVTVKLWEAVNWSPAMPPTILAWDWTAIRRILPMEARSP
Ga0187869_100657844	3300018030	Peatland	GRLLHLGTLLAAKLWQAAGWSISISPTILAWDWTAIRRILPMEARSP
Ga0187867_103418771	3300018033	Peatland	AWASRLVNLGTLLTVKLREAAAWRASTSPTILAWDWSAIRRILPVEARSP
Ga0187883_104551591	3300018037	Peatland	WAGRLLHLGILLTTLLWRAIGWSISMAPTILAWDWSAIRRILLLEASSP
Ga0187855_100288865	3300018038	Peatland	LLHLGILLATKLRQAAGWSISTAPTILAWDWTAIRRILLLEA
Ga0187887_108212601	3300018043	Peatland	RRWAGRLLHLGTLLAITLWQAAGWSVSIAPTILAWDWTAIRRILLLEASSP
Ga0187765_106106502	3300018060	Tropical Peatland	VGTLLAAKLWQAAGWSAAISPTILAWDWTAIRRMLPIEARSP
Ga0182025_12316125	3300019786	Permafrost	LLHLGTLLATMLWQATGWSAAMATTILAWDWTAIRRILLLEASSP
Ga0210406_100684304	3300021168	Soil	RLLHLGTLLAAQLWQTTGWSVSTSPTILAWDWTAIRRILSWEASSP
Ga0210405_106502492	3300021171	Soil	LLHLGTLLATKLWQATGWSILMAPTILAWDWTAIRRILLLEASSP
Ga0210405_108769171	3300021171	Soil	GTLLMAKLWQAINWSASTAPTILAWDWTAIRRILPLEARSP
Ga0210394_115315281	3300021420	Soil	LLYLGTLLAAKIRQTTGWTFSTSPTILAWDWMAIRRILPLEASSP
Ga0210402_108643461	3300021478	Soil	PDPSTVRRWAGRLLQLGTLLATKLWQATGWSVSISPTILAWDWTAIRRILPVEARSP
Ga0210409_100652661	3300021559	Soil	DPSTVRRWAGRLLHLGTLLAATLWLATGCSTSTPPTILAWDWTAMRRILPLEAGSP
Ga0213853_109891601	3300021861	Watersheds	TLLAAKLWQATGWSVSISPTILAWDWTAIRRILLLEASSP
Ga0213853_113107582	3300021861	Watersheds	LDLGTLLAVKLWQATGWSAATPPTILAWDWDAIRRIL
Ga0212123_107333862	3300022557	Iron-Sulfur Acid Spring	SPDPSTVRRWAGRLLHVGSLLVTKLWQAAGWGVSMAPTILAWDWTAIRRILLLEESSP
Ga0222622_102721132	3300022756	Groundwater Sediment	LLHLGTLLAAKLWRATGCSPSTVPTILAWDWTAIRLILPLEVSSP
Ga0179589_105813721	3300024288	Vadose Zone Soil	PDPSTVRRWAGRLLALGTLLAAKLWQATDCSASMFPTILAWDWTAIRRILPLEARSP
Ga0207699_110638942	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LLHVGTLLAAKLWQAAAWSVSIAPTILAWDWSAVRRILLLEASSP
Ga0207693_113562692	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LATKLWQAVDWNFSISPTILTWDWTVVRRILLSEASSP
Ga0208043_10308923	3300027570	Peatlands Soil	VRRWAGRLLHLGTLLAAKLWQATGCSTSTPPTILAWDWTAIRRILPLEASSP
Ga0209527_10006129	3300027583	Forest Soil	AKLWQAAGWSISISPTILAWDWTAIRRILLLEASSP
Ga0209274_104138622	3300027853	Soil	AWASRLVHLGTLLTLKLREAAGWRTSTSPTILAWDWSAIRRILPVEARSP
Ga0209517_10000180104	3300027854	Peatlands Soil	LLHLGTLLAAKLWQATGWSVSTPPTILAWDWTAIRRILPLEASSP
Ga0209465_104104201	3300027874	Tropical Forest Soil	AGTLLATKLWQAAGWSAAMSPTILAWDWTAIRRILPIEASSP
Ga0209698_100288141	3300027911	Watersheds	LLHLGTLLAAKLWQAGWSVSISSTILAWDWTAIRRILLLE
Ga0209698_101973783	3300027911	Watersheds	LLHLGTLLAAKLWQAAGWSISISPTILAWDWTAIRRILLLEASSP
Ga0209698_104558472	3300027911	Watersheds	LLHLGTLLAAKLWQAVGWSVSISPTILAWDWTAIRRILLLEASSP
Ga0265358_1000044	3300028010	Rhizosphere	LLHLGTLLAAQLWQAAGWSLSISPTILAWDWTAIRRILLLEASSP
Ga0311357_116708152	3300030524	Palsa	LLHLGILLATKLRQAAGWSISTAPTILAWDWTAIRRILLLEASSP
Ga0311356_109974832	3300030617	Palsa	LGILLATKLRQAAGWSISTAPTILAWDWTAIRRILLLEANSP
Ga0302313_103144351	3300030693	Palsa	GRLLVVGTALAIKLWQAIGRSRAILPTILAWDWTAIRRILLLEASSP
Ga0310039_100023869	3300030706	Peatlands Soil	LHLGTLLAAKLWQATGWSVSISPTILAWDWTAIRRILQLEASSP
Ga0170834_1056764271	3300031057	Forest Soil	LGTLLAAKLWRATGCSPSTVPTILAWDWTAIRLILPLEASSP
Ga0170823_127414882	3300031128	Forest Soil	LQLGTLLAAKFWQATGWNTSTPPTILAWDWTSISRILPLEARSP
Ga0302324_1004424871	3300031236	Palsa	LLHLGTLLATMLWQATGWSAAMAPTILAWDWTAIRRILLLEASSP
Ga0170820_164688081	3300031446	Forest Soil	LLRLGTLLTIALWRATGWSLSTSPTILAWDWTMIRRILPLE
Ga0302320_121271221	3300031524	Bog	VRRWAGRLLHLGTLLATMLWRAIGWSISISPTILAWDWTAIRRILLLEVSSP
Ga0318534_107761411	3300031544	Soil	VGTLLAAKLWQAAGWSAAISPTILAWDWTAVRRILPIEARSP
Ga0318501_101361613	3300031736	Soil	VGSLLTAKLWQAAGWSAAMSPTIVAWDWTTIRRILPLEARSP
Ga0307477_102508171	3300031753	Hardwood Forest Soil	VRRWAGRLLQVGLLLAAKLWQAAGWSAAMSPTILAWDWTAIHRILPIEARSP
Ga0307475_113874351	3300031754	Hardwood Forest Soil	TLLMAKLWQASNWRASMPPTILAWDWPAIRRILPLEAKSP
Ga0318543_102383041	3300031777	Soil	LLATKLWPAAGWSAEMFPTILAWDWTAIRLILPIEARSP
Ga0310913_108581661	3300031945	Soil	RWAGRLLHLGTLLAAKLWQAAGWSAALSPTILAWDWTAIRRILPIEASSP
Ga0306926_120579311	3300031954	Soil	CDAGSDVCWVGNLAGKLWQDAGWRAAMSPTILAWDWTAIRCILPNEARSP
Ga0318507_101407082	3300032025	Soil	GSLLTAKLWQAAGWSAAMSPTIVAWDWTTIRRILPLEARSP
Ga0318558_102350122	3300032044	Soil	AGRLLHVATLLATKLWQAAGLSAAISPTILAWDWITIGRILPIEARSP
Ga0306924_119538941	3300032076	Soil	LLQVGTLLAAKLWQAAGWSAAMSPTILAWDWTAIRRILPIEARS
Ga0311301_100287003	3300032160	Peatlands Soil	LLHLGTLLAAKLWQAAGWSVSISPTILAWDWTAIRRILLLEASSP
Ga0307470_116797602	3300032174	Hardwood Forest Soil	LHWGTLLAAKFWQVVSWSAAISPTILAWDWTAIRRILPIEARSP
Ga0335078_103603843	3300032805	Soil	RLLHLGTLLAAKLWQAAGWSISTSPTILAWDWTALRRILLLEASSP
Ga0335077_113042001	3300033158	Soil	VRRWAGRLLQLGTMLAVKLWQAVGWSPALAPTIFAWDWRAIRRILPLEARSP
Ga0364943_0175677_1_159	3300034354	Sediment	VRRWGGRLLHLGTLVAAKLWRATGCSPSTVPTILAWDWTAIRLILPLEVSSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088998

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences