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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133410 | Gp0290875 | Ga0247705 |
| Sample Name | Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-W_N |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 60097731 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → hill → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Arizona | |||||||
| Coordinates | Lat. (o) | 32.5789 | Long. (o) | -110.8512 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005923 | Metagenome / Metatranscriptome | 386 | Y |
| F020786 | Metagenome / Metatranscriptome | 222 | Y |
| F044388 | Metagenome | 154 | Y |
| F049823 | Metagenome | 146 | Y |
| F050290 | Metagenome | 145 | Y |
| F058115 | Metagenome / Metatranscriptome | 135 | Y |
| F076881 | Metagenome / Metatranscriptome | 117 | Y |
| F081174 | Metagenome / Metatranscriptome | 114 | Y |
| F083539 | Metagenome | 112 | Y |
| F098418 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247705_1000936 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album | 3707 | Open in IMG/M |
| Ga0247705_1003781 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album | 1797 | Open in IMG/M |
| Ga0247705_1005050 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1525 | Open in IMG/M |
| Ga0247705_1007277 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1223 | Open in IMG/M |
| Ga0247705_1007692 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1184 | Open in IMG/M |
| Ga0247705_1019507 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 645 | Open in IMG/M |
| Ga0247705_1020681 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 621 | Open in IMG/M |
| Ga0247705_1020786 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 619 | Open in IMG/M |
| Ga0247705_1026191 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059 | 534 | Open in IMG/M |
| Ga0247705_1026234 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 534 | Open in IMG/M |
| Ga0247705_1029231 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247705_1000936 | Ga0247705_10009367 | F058115 | LTKNALLGNSFFSMDRLKGYLDEEVDYDRCFHSEQELVFVVANLTAGREELRGNRTEHDVDTFRKVATAGYTIPILHPLVEIDGEQFADGGFLWNVPFEHAEAWGAERIFVLSVIPSELPPAESLRFIPQVATRMYDMFWRTFGNSSYLQKRVEDGRHDGVEVTVLEPSPETGMFDPVGMLNAHPGKSKKLLLQGYRDTEQALLGSR |
| Ga0247705_1003781 | Ga0247705_10037813 | F020786 | MVTMALRATGHLTAWLVWHSSRVSLLEDLDEPQPPAAA |
| Ga0247705_1005050 | Ga0247705_10050502 | F050290 | VRPPWESEEAAFAFLLRVLVVCVVVAALAFVVKAVF |
| Ga0247705_1007277 | Ga0247705_10072772 | F044388 | VTPGAAASIRRVKIDGHYDEQADIAWLRFEGYDPGSVIAEETDFGLRELDRTGGRLVGLEYWRASGTLPAEFLRMLPAPPVGVAR |
| Ga0247705_1007692 | Ga0247705_10076922 | F049823 | MQPESASGGYAVARGVVPQHLIDDVLRLLHLDLLEQGHSAHTLGEWLWGMHWFPHLNHREEVLALAQSLPAQWRDGMLCDPQILLQFPHVGPEPRIAFHIDEEPPWADGRRYVRIVGVALTPWRRENGGLLVKDGDEAVAVELDPTDAVMLAPDLEHSGGVNRTGSLRYGVYFRWLQD |
| Ga0247705_1019507 | Ga0247705_10195071 | F076881 | VTRKTYRCPECYARVVGEPDDDAKTTLWLHSLSGRCRAKQTPKTEKPRRKERLEAMLGEEWG |
| Ga0247705_1020681 | Ga0247705_10206811 | F005923 | MERAADFVALGHAGSEHYAGLETFPNPGVAHVELTSDELVAVCPITSQPDFY |
| Ga0247705_1020786 | Ga0247705_10207862 | F098418 | MPGISRVRAMPWVMVFELALTLRRHWRRLEPAERAELAALIKKSQARPMRLDATERVRVRQLVAKLEPAQIARSVVPIGRRARNRRGR |
| Ga0247705_1026191 | Ga0247705_10261912 | F083539 | MRRRPPHEVLAAWIVTGPIGHLYAGIADWAVVLVRYARARGRLDRM |
| Ga0247705_1026234 | Ga0247705_10262341 | F098418 | VRVAARPMPAIFRVRAMPWVMVFELAVTLRRHWKRLEPGERAELAALIKKSQGRPGRLDAGERVRVRRLVAKLEPAQIARSVVPIGRRARRRGR |
| Ga0247705_1029231 | Ga0247705_10292311 | F081174 | VATRMYDVFWRTFGNSSYLEKNLEEGRYRGIEVTVLEPAAETGMFDPVGMLNAHPGKSRKLLLQGYRDAEQALHGGEPRSGRVRGSRPRDWKSDHPVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |