3300028003: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-E_N

Overview

Basic Information

• IMG/M Taxon OID: 3300028003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133410 | Gp0290877 | Ga0247707
• Sample Name: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-E_N
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70956058
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → hill → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Arizona
• Coordinates
  • Lat. (^o): 32.5788
  • Long. (^o): -110.8509
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F045952	Metagenome	152	Y
F048859	Metagenome / Metatranscriptome	147	Y
F053149	Metagenome / Metatranscriptome	141	Y
F058115	Metagenome / Metatranscriptome	135	Y
F065699	Metagenome / Metatranscriptome	127	Y
F067309	Metagenome	125	Y
F076881	Metagenome / Metatranscriptome	117	Y
F081578	Metagenome / Metatranscriptome	114	N
F095087	Metagenome / Metatranscriptome	105	Y
F098387	Metagenome / Metatranscriptome	103	Y
F102223	Metagenome	101	Y
F104557	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247707_1000020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19100
Ga0247707_1000062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13457
Ga0247707_1000089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11932
Ga0247707_1000171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9159
Ga0247707_1002420	All Organisms → cellular organisms → Bacteria	2174
Ga0247707_1007355	All Organisms → cellular organisms → Bacteria	1081
Ga0247707_1008356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1006
Ga0247707_1011151	All Organisms → cellular organisms → Bacteria → Terrabacteria group	859
Ga0247707_1012723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	799
Ga0247707_1016524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	698
Ga0247707_1017080	Not Available	686
Ga0247707_1018376	Not Available	660
Ga0247707_1022863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592
Ga0247707_1024496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573
Ga0247707_1027572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247707_1000020	Ga0247707_10000203	F067309	MTNIIGRPNGDLLDVMLGDGADPEQAIINGSERRECSEDDRRGDEPTAPKP
Ga0247707_1000062	Ga0247707_10000623	F104557	VVDVAPHLQDHAVGLEMEIVELARQADQAAHEGWPEREAELRKELDALYAELASVAERLTQEVAASAAPPQLDAEPVGDAVRH
Ga0247707_1000089	Ga0247707_10000896	F076881	MSRAVTRKTYRCPECYARVVGEPDDDAKTTLWLHSLSGRCRAKQTPKTEKPRRKERLEAMLGEEWG
Ga0247707_1000171	Ga0247707_100017113	F048859	VAEQPIPFSELLAGYGTTTIGEGMRIESVFALLKLRSSDASVAWSVRSGGTPLTMEELLGVLDGLTTSLRQRLTRAWKRTAADAPAGTTGGRGGPPTPTSFSELLAGLETVGVIDDYLIETVFAVIKARRGDGAPVWYVRSSEMRLSSEELLGALEGYATTVRTDLAASWKW
Ga0247707_1002420	Ga0247707_10024203	F067309	MSAHVIGRPHDDLLDVLLGPGAEPEQAFIAGREEGPEEGGGGEDHPLGEEPTEADR
Ga0247707_1007355	Ga0247707_10073553	F065699	NCPMTEQYIGWALVVGLALGGALVWFAIGRIPRAADELTPDERRAEAEWLSAEINSRGGVAPVELVDEILDLHADRGAGRHLRSD
Ga0247707_1008356	Ga0247707_10083562	F098387	MTDLREDYDLPRKPPLPFRQAAVMCTVVVLALAGWLLLPSSPITVALLAVALLAAVFFGVGAVLRSRELDEKPGRDPVTPPSVDRG
Ga0247707_1011151	Ga0247707_10111512	F095087	MSVDMDDDVVVVARVRLSLANGSGEEWMVPMQLTDDALSYHAVVYPPEGAVVVAVDPLKREGAARQDLVVARADVATL
Ga0247707_1012723	Ga0247707_10127231	F058115	PKVFDISLTKNALLGNSFFSMDRLKGYLDEEVDYDRCFHSEQELVFVVANLTAGREELRGNRTEHDVDTFRKVATAGYTIPILHPLVEIDGEQFADGGFLWNVPFEHAEAWGAERIFVLSVIPSELPPAESLRFIPQVATRMYDMFWRTFGNSSYLQKRVEDGRHDGVEVTVLEPSPETGMFDPVGMLNAHPGKSKKLLLQGYRDTEQALLGSR
Ga0247707_1016524	Ga0247707_10165242	F102223	VRQIPRRLPAPWDLSYAAFMPGLDAPDEIDVIAEDVDGSALLSIVQTGPWARDVARERKRLKRKLGLYLRYALEGQMVATYPSLEGRPVVIALMYDEQPPQALLDYWRRRGETAARDGVTLKTQALGETVWRA
Ga0247707_1017080	Ga0247707_10170802	F076881	VTHKPMPRTTIRCPECYARVVAGAEDDEQTALWLHGLSGRCRAKQTPKTERPRRKERLEAMLGEEWG
Ga0247707_1018376	Ga0247707_10183761	F081578	GRPGHAQAPEDVSNAGHRQELRPHLRDEQVPGDSVIVVRGGPASLATLATHARRTHDALMLDGQSLWGVSVFCALDDIRPSSLDGLLRRFASYRVVHLPRAGQLRAARFELLPSFGRPHFTVRVGDDGPVELGRLFEALGREEPNPYHGRGPGRR
Ga0247707_1022863	Ga0247707_10228632	F045952	MPTAARLMVSAEPPALMNGSGMPVTGMSAVTTMMLTNACPTSHVVMP
Ga0247707_1024496	Ga0247707_10244962	F053149	MRIVVWGSGIVESRMLWERAESTLEAQHLAETLSIAWEDIEGLDRWSVEIECPDPDDVLRLVEETSGDDAVLGWSPAPKEIPAAWFMTDDAYHQGHDW
Ga0247707_1027572	Ga0247707_10275722	F003586	MAKRKQTRAEREQREAQRAEMLANAERTRKLAERAQAKLDAVAPQR