3300027265: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027265
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114675 | Gp0119871 | Ga0208789
• Sample Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 252479944
• Sequencing Scaffolds: 26
• Novel Protein Genes: 27
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Salinispira → Salinispira pacifica	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland ecosystem → enriched soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5172
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010231	Metagenome	306	Y
F017253	Metagenome	242	Y
F025315	Metagenome	202	Y
F027599	Metagenome / Metatranscriptome	194	Y
F064436	Metagenome / Metatranscriptome	128	Y
F069690	Metagenome	123	Y
F074396	Metagenome / Metatranscriptome	119	Y
F074797	Metagenome / Metatranscriptome	119	Y
F075038	Metagenome / Metatranscriptome	119	Y
F079372	Metagenome	116	Y
F081459	Metagenome / Metatranscriptome	114	Y
F085790	Metagenome / Metatranscriptome	111	Y
F087946	Metagenome	110	Y
F102533	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208789_1000023	All Organisms → cellular organisms → Bacteria	338269
Ga0208789_1000058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	179730
Ga0208789_1000338	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	50149
Ga0208789_1000531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	34288
Ga0208789_1001267	All Organisms → cellular organisms → Bacteria → Proteobacteria	15132
Ga0208789_1001413	All Organisms → cellular organisms → Bacteria	13535
Ga0208789_1003032	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6535
Ga0208789_1004217	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4994
Ga0208789_1004303	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Salinispira → Salinispira pacifica	4926
Ga0208789_1007737	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3189
Ga0208789_1016143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1904
Ga0208789_1018023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1756
Ga0208789_1018385	Not Available	1732
Ga0208789_1028178	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1276
Ga0208789_1029455	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31	1236
Ga0208789_1029925	Not Available	1221
Ga0208789_1030679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1200
Ga0208789_1045897	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	899
Ga0208789_1048985	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	858
Ga0208789_1064225	Not Available	702
Ga0208789_1068633	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	668
Ga0208789_1083793	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	578
Ga0208789_1086307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565
Ga0208789_1087784	All Organisms → cellular organisms → Bacteria → Terrabacteria group	558
Ga0208789_1088352	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	556
Ga0208789_1090380	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208789_1000023	Ga0208789_1000023202	F075038	MSSTWDLRKGKVKVVEDASTASLVVIARDLKDRDEKIAVLEEVVRRLKA
Ga0208789_1000052	Ga0208789_1000052152	F017253	MVNFQNLSKPILFQVATNIGGNVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1000058	Ga0208789_100005865	F102533	MKSLVKKKMEVQKVNTKKTAQCCAKTSKTVVGCHD
Ga0208789_1000338	Ga0208789_100033812	F087946	MLSKQRIPDLIVIAVLGLLLILLNYIGKIGIISDYPFIFLLAMYFIGRAMTWYIINKHMDNESEEE
Ga0208789_1000531	Ga0208789_100053133	F010231	THAYVHWLADVHSGGFAPAFTLSFHDSECSRKPPNAHSLGRYAQV
Ga0208789_1001267	Ga0208789_10012674	F085790	MAPNLPLNSDPACIVFRSFSSFVFLGSVHRLGAGGAG
Ga0208789_1001413	Ga0208789_100141314	F102533	MKSLVKKKIEVQKVNTKKVAQCCAKTSKTIVGCHD
Ga0208789_1003032	Ga0208789_10030322	F017253	MSIFYIGANVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1004217	Ga0208789_10042174	F087946	MLSKQRIPDLIVIVVLGLFLILLNYTGNIGVISNYPFIFLLVMYFVGRGVTWYIINKNAGDIDDGDGSQ
Ga0208789_1004303	Ga0208789_10043032	F102533	MKSLVKKKIEVQKVNTKKVAQCCAKTSTTVVGCHD
Ga0208789_1007737	Ga0208789_10077372	F087946	MLSKQRIPDLIVIAVLGLLLILLNYTGSIGIISDYPFIFLLVMYFIGRAVTWYIINKKMEEDES
Ga0208789_1016143	Ga0208789_10161434	F017253	SFPRMRYSRLAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1018023	Ga0208789_10180231	F010231	LLADVQSAGFAPAFTLSFHDSEYARKPPNAHSLGR
Ga0208789_1018385	Ga0208789_10183853	F017253	MIANVGSYTQGRIAGDLAIADLRFLSSRKAAWAERYTPKTTVAALDG
Ga0208789_1028178	Ga0208789_10281782	F025315	MQNYLLTTCVILLVVVMPLLVLYLKGSWPLRKVIPSLVIIPVFWYFTYTILHELSHAAGTYLVGGKVIAWRLIPRFWLGEFSGAWATPGGFTQRWQQLTSSAFPYLLDIVCLVVAIAVFRRRFSGNPIFVGLVFMLLCLRPAFDVVGETIGFLTGWRGDLYFIQLIAGPFALWSLILISIGLSVVSISSTISHVVRFSKYNIGQNTNGTKQNFIR
Ga0208789_1029455	Ga0208789_10294552	F017253	YSRLAGNVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1029925	Ga0208789_10299253	F074396	MSHFSVKVINKAGEPLRDIGVMIDYGWLGGTEEKRTHSDGWVEFHNRENKSGTIWVHGHSKGSHSLSDGKTYSFTI
Ga0208789_1030679	Ga0208789_10306792	F025315	MQSYLLVTCEILVIVVMPLLVLYLKGNWPLRKIIPSLVVIPVIWYFSYSIVHELSHAAGTYLVGGKVIDYRLIPRFWLGEFRGAWATPGGLTQSWQQLTAHAFPYLMDIVCFVSAILIFRRGSSRNPFVIGIAFMLLCLRPAFNILGETIGLLTGWRGDLYNMQQIVGPFALWSFILFSIGLAIYSTSSTLSHLVRFSKQQIRQNADDTKHNIVQKGEKNDD
Ga0208789_1045897	Ga0208789_10458972	F069690	MTQSEIISRTFRFVYNIPSNFIEEIWSDSPLLANHLKAKFTGFCKSEGYASANAILKFFSSLDESNTEKFCAYASTWIQKHQSN
Ga0208789_1048985	Ga0208789_10489851	F017253	MEALPHSIAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1064225	Ga0208789_10642251	F074797	MNESEPSMRCRENELSVKTAASLAAEEERGGNLFTGYVADVIQGA
Ga0208789_1068633	Ga0208789_10686331	F064436	VTLVPGQTAPAGTAAMLTLTGKFGFTVMLIALEVAGLPVAQSAFEVSTQVTISLVAKVVL
Ga0208789_1083793	Ga0208789_10837932	F079372	ITDNIAKDYPEFTIKEATSVTLNNVVTYEVLVSKGMTTETLLYDKDGKFLKKLEL
Ga0208789_1086307	Ga0208789_10863071	F081459	LKTPNNYRPFEILARLYYSQGEWDAAHEEVTKARKLNPFDRGLAEISGRIEFELKNFDLALDAFIDAFLLATDQKGESTEPVRRMINTLKRINNIDPKDLNARIKSRVEQLQMSTERLELRKENLFRIDTRKELKQIVQKIERDAEKRDNLIQISADLRNFTVFQHMRDEQIFRLSRFAHLDEFMQGE
Ga0208789_1087784	Ga0208789_10877841	F025315	RKPTMQNYLLVTFEILVVVVMPLLVLYLKGNWPLRKVIPLLVIIPVLWYFTYAPIHELSHAAGTYLVGGKVIEYQLIPRFWLGEFGGAWATPGGFTQSWQQLTSSAFPYILDIVSFVVAIFVFRQRFSRNPFFVGLAFMLLCLRPAFDLVGETIGFLTGWRGDLYFIELIAGSFALWSLILISIGL
Ga0208789_1088352	Ga0208789_10883521	F010231	VHSGGFAPAFTLSFHDSECSRKPPNAHSLGRYGAF
Ga0208789_1090380	Ga0208789_10903801	F027599	VPVPREAPPVAAAYQLMVPAEAVAPRVTVPVPQVDPGVTMVIVGMALTVAVTAVLAAV