3300026936: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026936
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0055681 | Ga0207585
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20553993
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001584	Metagenome / Metatranscriptome	668	Y
F014308	Metagenome / Metatranscriptome	264	Y
F026602	Metagenome / Metatranscriptome	197	N
F037804	Metagenome	167	N
F057488	Metagenome	136	N
F057496	Metagenome / Metatranscriptome	136	N
F063579	Metagenome / Metatranscriptome	129	Y
F072513	Metagenome / Metatranscriptome	121	N
F084388	Metagenome	112	N
F101572	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207585_100212	All Organisms → cellular organisms → Archaea	1028
Ga0207585_100482	All Organisms → cellular organisms → Archaea	844
Ga0207585_100652	Not Available	777
Ga0207585_100768	Not Available	738
Ga0207585_101219	All Organisms → cellular organisms → Bacteria	656
Ga0207585_101296	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	647
Ga0207585_102585	Not Available	540
Ga0207585_102880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523
Ga0207585_103015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516
Ga0207585_103265	All Organisms → cellular organisms → Archaea	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207585_100212	Ga0207585_1002121	F084388	VKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG
Ga0207585_100482	Ga0207585_1004822	F026602	LILASMHVFAGRLYAIEQPSKMEGINEEECNKIFNCKIISEDVLKYPDIVNPFTKNEDIAKTLVNNANDSKIMTEHTCQKLMDVDIVKKKDQKIGEQAPKYLVCLP
Ga0207585_100652	Ga0207585_1006522	F037804	MDDIEHDLEEFANYILEAIKQSEGEISNWDEIIRKWKEIEKKKDLALRKKLKXALF
Ga0207585_100768	Ga0207585_1007681	F057488	IGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHA
Ga0207585_101219	Ga0207585_1012191	F001584	GRLGGPIRFEFYRDSTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207585_101296	Ga0207585_1012962	F072513	VIPNRRWGLDAVGVVVNHIMTAGIAAHAIIVNIMSHTAVIFSAIGYGLGGRYINFQIPPL
Ga0207585_102585	Ga0207585_1025851	F101572	MLGDHGLTTALLDVLANGFAIVALVAKHLFGIAVDIVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAERTAERVTLGPPLWMARPSQLSW
Ga0207585_102880	Ga0207585_1028802	F063579	MAKKIDPKAKAKRQKIFAAIGGVILLGLLAFQVPRTMKMLHPAEESTSSSAPAATTATTPTSPIAAPSLA
Ga0207585_103015	Ga0207585_1030152	F014308	FPPELEVAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207585_103265	Ga0207585_1032652	F057496	EDHSSAYCKDEYVFGDKGEPLRLSHLIAFNVIEDAEHISGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGNPTVMKNIDAYLRNNLLESEYGLKL