3300026785: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026785
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072070 | Ga0207496
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25724208
• Sequencing Scaffolds: 27
• Novel Protein Genes: 28
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
Not Available	10
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000336	Metagenome / Metatranscriptome	1274	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002103	Metagenome / Metatranscriptome	593	Y
F003167	Metagenome / Metatranscriptome	504	Y
F004992	Metagenome / Metatranscriptome	416	Y
F005683	Metagenome / Metatranscriptome	393	Y
F008198	Metagenome / Metatranscriptome	337	Y
F017145	Metagenome / Metatranscriptome	242	Y
F022740	Metagenome / Metatranscriptome	213	Y
F023976	Metagenome / Metatranscriptome	208	Y
F029488	Metagenome / Metatranscriptome	188	N
F032172	Metagenome / Metatranscriptome	180	Y
F037890	Metagenome / Metatranscriptome	167	Y
F039117	Metagenome / Metatranscriptome	164	Y
F039759	Metagenome	163	Y
F043606	Metagenome / Metatranscriptome	156	N
F048418	Metagenome / Metatranscriptome	148	Y
F049092	Metagenome	147	N
F050525	Metagenome / Metatranscriptome	145	N
F063910	Metagenome / Metatranscriptome	129	N
F070698	Metagenome / Metatranscriptome	123	N
F075211	Metagenome	119	Y
F077270	Metagenome / Metatranscriptome	117	Y
F077755	Metagenome	117	Y
F084203	Metagenome / Metatranscriptome	112	N
F089980	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207496_100314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1236
Ga0207496_100632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022
Ga0207496_100913	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	922
Ga0207496_100920	Not Available	919
Ga0207496_100938	All Organisms → cellular organisms → Archaea	915
Ga0207496_101111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	874
Ga0207496_101259	All Organisms → cellular organisms → Bacteria → Proteobacteria	843
Ga0207496_101597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780
Ga0207496_101741	Not Available	759
Ga0207496_101830	Not Available	746
Ga0207496_102096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715
Ga0207496_102318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693
Ga0207496_103145	All Organisms → cellular organisms → Bacteria	627
Ga0207496_103550	Not Available	604
Ga0207496_104279	All Organisms → cellular organisms → Bacteria	570
Ga0207496_104612	Not Available	556
Ga0207496_104683	Not Available	553
Ga0207496_104714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552
Ga0207496_104821	All Organisms → cellular organisms → Archaea	548
Ga0207496_105063	All Organisms → cellular organisms → Archaea	539
Ga0207496_105153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	536
Ga0207496_105286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532
Ga0207496_105510	All Organisms → cellular organisms → Bacteria	525
Ga0207496_105857	Not Available	514
Ga0207496_105912	Not Available	512
Ga0207496_105958	Not Available	511
Ga0207496_106014	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207496_100314	Ga0207496_1003141	F001033	MKFVSRTKLTAVPYQIHLHTNEKRELLMCGHSLIARLTIAVFVFQMLGVSSVVHAESPDSTAGTSSAGTRKLFIGPSSSFVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPGPRP
Ga0207496_100632	Ga0207496_1006321	F077755	MITDVNPFVYSRPIAPDQIVDRDEETQLLLKNAVGGH
Ga0207496_100913	Ga0207496_1009131	F004992	MSNETPAAIDPDMFAAVFSQNWDNARHIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLIGLLTSLRLKGELEECLAKIEAMSVQARVNDFVALGQLEGRSSRYPRFRWIFPIFYAMTTAGFITLIVYRLVTGEAVK
Ga0207496_100920	Ga0207496_1009201	F039759	RLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRASRNLFSSVFDLGRVPATLDELMLERLDGRGDLIAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVA
Ga0207496_100938	Ga0207496_1009381	F005683	MEKSNGTKIMGILLVFGLVVYSIYFGQISFVEGVELKTVGKGAISCGNGEEVKGVRINFFVSYDGGTPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG
Ga0207496_101111	Ga0207496_1011111	F003167	MEPTITQNGALFAVQQRSIKRNCSQHHHRQIASPNKTISTLRTSVGEFVFRQTPLGCYLELVVGNTRWALGLYGTNEAAVRALKNGRTGFRTWDALGGKTAANQIGTLSRWNKGEQTP
Ga0207496_101259	Ga0207496_1012591	F063910	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGDKK
Ga0207496_101597	Ga0207496_1015972	F001757	MRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRSRPDQPDRTKVV
Ga0207496_101741	Ga0207496_1017413	F029488	MHQIALMTLAALLLAGCASGYSPECVTGTGTKDCASGTLGHQQMTQEREGDETVASIDDARCRAHAAPGSSEYLACRQRAAKSRGAGR
Ga0207496_101830	Ga0207496_1018302	F022740	LKRLGAENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIRKLGWKIVQLKPDR
Ga0207496_102096	Ga0207496_1020962	F048418	LQGTCKENLRYINVATGFAGKSNREDDSKIVDVRMPIHLPPKARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRF
Ga0207496_102318	Ga0207496_1023181	F023976	CRSPKTDFNYQVATLDDVRSRYVGDCKPPFYALSRDYFTREAHQHFATEAAAFFLLMMTSVLPLFNGANAVVELIRSTWGAF
Ga0207496_103145	Ga0207496_1031452	F075211	RTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207496_103550	Ga0207496_1035502	F039117	PKLRCVYLEVTLVNGQNYSIPVEDGHSVEEELELFLRREGRYAADWVQLQKASRKLFVRYEQIILVSPMD
Ga0207496_104279	Ga0207496_1042791	F000268	MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYHDSTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDQ
Ga0207496_104612	Ga0207496_1046122	F017145	AALLIYSNDWHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRSEKEQRGGMSSLRINAIGKAFNRRDE
Ga0207496_104683	Ga0207496_1046832	F032172	VAELAMFVSHMDGIGRAMTMMQLEGEEPVQIIRGRFGPSGGIVPELDKDGQVVPTGHFNNRLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207496_104714	Ga0207496_1047141	F002103	MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAEKYFETHEAMTLPGQALRIDLRPAFRKPLADVTPKFRAVSIGYTFTPQR
Ga0207496_104821	Ga0207496_1048211	F089980	MDLESIIELIVMNWLGIFSLIATIIIGFTTIRYRNKQHQINGLLDAFRILNTREHRTSRRKVYDLYIEYEKNKDVRTFDNSPEVVDVRADFDVIGTLVKSRNIDEKLFLIEYGPLAYRCWKYLKNHIEAERKKRNFDPFMMNFESLAGKADNFWLKRGYDLSKTLL
Ga0207496_105063	Ga0207496_1050631	F070698	MAILNLSETWNNGHNTAFRDSYLDDDNSKILPNGNAPYVIKGNGDCMIIVHADALGVSKNFGDGH
Ga0207496_105153	Ga0207496_1051532	F037890	MKTLAKHVAARLEARAFCVVFENDLERLWPSNKMARAKRKKEIQSFAESQGWIAEVVEGGFGARAIFREGLNRG
Ga0207496_105286	Ga0207496_1052861	F077270	AGFPFTASILLLAGPALTWAVIPVAFSPYGQGPLRDVGWKVELVWLPVMALASSALLYRAHGRRRARLDGRPPRGKALRKSGYRARVSAALGGMALLLVAIPFVPALAGIGGSTVRYSYEPRLTPEVTGQFVSTKRGPVKLFAWSDPQSKTPADALRLHARDVRSLLVRAAALDAAK
Ga0207496_105510	Ga0207496_1055101	F043606	IVNLKGQFDADAAHLQIKASRGKITPALATEMKNDVNKTYDHALGR
Ga0207496_105510	Ga0207496_1055102	F000336	MPSAGKTKRGKSLRKTSGKKSALDSAFDQVTDESVAASMQEFRDLLAQAKGDTNELIRQNAQELEERLILLKKRKIDKEDFDFFVENQKRDLSVFIDSQPAQSQERAEKLTLHILEIAATKVVPVLIMMI
Ga0207496_105857	Ga0207496_1058571	F084203	MRARVRRAMWMLGALALAVPASAQESTDVAPLTPEDSALLANALVFDPAALVTAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPLQTEWSNSVGADLAPSRPATYPLPLPTEHNNGLPAGAA
Ga0207496_105912	Ga0207496_1059121	F049092	TGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQ
Ga0207496_105958	Ga0207496_1059581	F008198	MPLNEIPKHIGPQTRSLIEAALEDAWQELIKDGNLEAAPARNKLRTTMVALASVGETDHRKLKWFAIHAWKGALQAEQSARRVRANGPAA
Ga0207496_106014	Ga0207496_1060141	F050525	MRGFAGLLAYLAGVSAIFGIGIVGLMALHSPTGRTPSSPPVAAAEPLAKPAKRPLDDKKTAHRNQKHKKEHVTRKQPHEAPFTDAGRNAYGYAEEPRRIDPNRFLFFGR