Metagenome Family F075211

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075211
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	42 residues
Representative Sequence	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG
Number of Associated Samples	81
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	19.33 %
% of genes near scaffold ends (potentially truncated)	29.41 %
% of genes from short scaffolds (< 2000 bps)	89.92 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.235 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.807 % of family members)
Environment Ontology (ENVO)	Unclassified (32.773 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.546 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.07% β-sheet: 0.00% Coil/Unstructured: 44.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13884	Peptidase_S74	2.52
PF06056	Terminase_5	0.84
PF06739	SBBP	0.84
PF00069	Pkinase	0.84
PF00892	EamA	0.84
PF13517	FG-GAP_3	0.84
PF00589	Phage_integrase	0.84
PF12779	WXXGXW	0.84
PF14534	DUF4440	0.84
PF00850	Hist_deacetyl	0.84
PF00884	Sulfatase	0.84
PF01177	Asp_Glu_race	0.84
PF13432	TPR_16	0.84
PF00196	GerE	0.84
PF07995	GSDH	0.84
PF00805	Pentapeptide	0.84
PF00535	Glycos_transf_2	0.84
PF13414	TPR_11	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.36
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.68
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.84
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.24 %
Unclassified	root	N/A	11.76 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	39.50 %
Unclassified	root	N/A	11.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.84 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	39.50 %
Unclassified	root	N/A	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	31.09 %
Unclassified	root	N/A	11.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.52 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	31.09 %
Unclassified	root	N/A	11.76 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.68 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.68 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.84 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	31.09 %
Unclassified	root	N/A	11.76 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.68 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.68 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	31.09 %
Unclassified	root	N/A	11.76 %
Methylocystis bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	1.68 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.68 %
Paraburkholderia steynii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia steynii	0.84 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.84 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	31.09 %
Unclassified	root	N/A	11.76 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.68 %
Methylocystis bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	1.68 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.84 %
Paraburkholderia steynii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia steynii	0.84 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1030806	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300004114\|Ga0062593_100470966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	1153	Open in IMG/M
3300004479\|Ga0062595_101229771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	668	Open in IMG/M
3300004643\|Ga0062591_100288972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila	1282	Open in IMG/M
3300005186\|Ga0066676_10009524	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4713	Open in IMG/M
3300005289\|Ga0065704_10259026	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300005294\|Ga0065705_10022339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1943	Open in IMG/M
3300005294\|Ga0065705_10029805	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300005294\|Ga0065705_10571106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	725	Open in IMG/M
3300005295\|Ga0065707_10038146	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300005332\|Ga0066388_101079279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1356	Open in IMG/M
3300005332\|Ga0066388_101631911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1137	Open in IMG/M
3300005332\|Ga0066388_103428183	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300005332\|Ga0066388_105837225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300005439\|Ga0070711_100290123	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300005713\|Ga0066905_100111912	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1882	Open in IMG/M
3300005713\|Ga0066905_100284010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1290	Open in IMG/M
3300005713\|Ga0066905_100323337	Not Available	1221	Open in IMG/M
3300005764\|Ga0066903_100387998	All Organisms → cellular organisms → Bacteria	2288	Open in IMG/M
3300005764\|Ga0066903_100650805	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300005764\|Ga0066903_101064772	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1487	Open in IMG/M
3300005764\|Ga0066903_103506932	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300005764\|Ga0066903_105116379	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	695	Open in IMG/M
3300005764\|Ga0066903_107601985	Not Available	558	Open in IMG/M
3300005764\|Ga0066903_107647781	Not Available	557	Open in IMG/M
3300005937\|Ga0081455_10776215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300006032\|Ga0066696_10952088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300006046\|Ga0066652_100038779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3494	Open in IMG/M
3300006173\|Ga0070716_101464144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300006871\|Ga0075434_101552907	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009012\|Ga0066710_102536748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300009100\|Ga0075418_12741593	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300009100\|Ga0075418_12885559	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300010043\|Ga0126380_10306996	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300010043\|Ga0126380_11855030	Not Available	547	Open in IMG/M
3300010043\|Ga0126380_12109785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300010046\|Ga0126384_11642608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia steynii	606	Open in IMG/M
3300010046\|Ga0126384_12505974	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300010047\|Ga0126382_11562887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	610	Open in IMG/M
3300010333\|Ga0134080_10085690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1281	Open in IMG/M
3300010358\|Ga0126370_11379989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	664	Open in IMG/M
3300010362\|Ga0126377_11634173	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010366\|Ga0126379_10930526	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300010376\|Ga0126381_100130960	All Organisms → cellular organisms → Bacteria	3263	Open in IMG/M
3300010376\|Ga0126381_100563475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1616	Open in IMG/M
3300010376\|Ga0126381_100702361	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300010376\|Ga0126381_103738162	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300010376\|Ga0126381_105111633	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300010397\|Ga0134124_12446625	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300010398\|Ga0126383_10372362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1456	Open in IMG/M
3300010398\|Ga0126383_10643737	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300010398\|Ga0126383_13390694	Not Available	520	Open in IMG/M
3300012198\|Ga0137364_10006830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6250	Open in IMG/M
3300012200\|Ga0137382_10709222	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300012201\|Ga0137365_10183418	All Organisms → cellular organisms → Bacteria	1568	Open in IMG/M
3300012202\|Ga0137363_10034443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3525	Open in IMG/M
3300012350\|Ga0137372_10415421	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300012354\|Ga0137366_10121961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1968	Open in IMG/M
3300012582\|Ga0137358_11027573	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300012911\|Ga0157301_10283818	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300012915\|Ga0157302_10439195	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012922\|Ga0137394_10176344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1823	Open in IMG/M
3300012948\|Ga0126375_10252518	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300012986\|Ga0164304_11007761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	660	Open in IMG/M
3300012989\|Ga0164305_12132137	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	514	Open in IMG/M
3300013308\|Ga0157375_12747734	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	589	Open in IMG/M
3300015077\|Ga0173483_10499005	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300015371\|Ga0132258_10339405	All Organisms → cellular organisms → Bacteria	3711	Open in IMG/M
3300015371\|Ga0132258_12059059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1435	Open in IMG/M
3300015371\|Ga0132258_12507305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1290	Open in IMG/M
3300015371\|Ga0132258_13756514	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300015374\|Ga0132255_100037651	All Organisms → cellular organisms → Bacteria	6193	Open in IMG/M
3300016270\|Ga0182036_10665379	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300016270\|Ga0182036_11153937	Not Available	643	Open in IMG/M
3300016294\|Ga0182041_10405407	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300016294\|Ga0182041_11377500	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300016319\|Ga0182033_11478899	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300016319\|Ga0182033_12171033	Not Available	507	Open in IMG/M
3300016387\|Ga0182040_10321535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1190	Open in IMG/M
3300016387\|Ga0182040_10737519	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300016404\|Ga0182037_10540683	Not Available	982	Open in IMG/M
3300016404\|Ga0182037_11799557	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300016422\|Ga0182039_11972302	Not Available	537	Open in IMG/M
3300016445\|Ga0182038_10123150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1930	Open in IMG/M
3300019362\|Ga0173479_10314655	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300019877\|Ga0193722_1000398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	9573	Open in IMG/M
3300019877\|Ga0193722_1029459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1420	Open in IMG/M
3300019886\|Ga0193727_1032378	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1782	Open in IMG/M
3300021560\|Ga0126371_11295898	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300021560\|Ga0126371_11367904	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300024186\|Ga0247688_1054945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300026035\|Ga0207703_11377886	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300026759\|Ga0207527_101929	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300026785\|Ga0207496_103145	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300026841\|Ga0207490_1006254	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300027403\|Ga0207609_101708	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300028592\|Ga0247822_11046698	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300028709\|Ga0307279_10101822	Not Available	536	Open in IMG/M
3300028878\|Ga0307278_10446198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	567	Open in IMG/M
3300031573\|Ga0310915_10287453	Not Available	1161	Open in IMG/M
3300031820\|Ga0307473_10434731	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300031890\|Ga0306925_10415183	Not Available	1441	Open in IMG/M
3300031890\|Ga0306925_10757854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1011	Open in IMG/M
3300031890\|Ga0306925_12269167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300031897\|Ga0318520_10879620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300031912\|Ga0306921_10090797	All Organisms → cellular organisms → Bacteria	3527	Open in IMG/M
3300031912\|Ga0306921_11734381	Not Available	674	Open in IMG/M
3300031942\|Ga0310916_10481929	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300031942\|Ga0310916_11012800	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300031946\|Ga0310910_11019792	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300031947\|Ga0310909_10669767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	864	Open in IMG/M
3300032001\|Ga0306922_12014951	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032064\|Ga0318510_10248195	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300032180\|Ga0307471_103003408	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300032205\|Ga0307472_100198966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1521	Open in IMG/M
3300032261\|Ga0306920_100218444	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300032261\|Ga0306920_100826394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1359	Open in IMG/M
3300033289\|Ga0310914_10729156	Not Available	888	Open in IMG/M
3300033412\|Ga0310810_10561728	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.92%
Host-Associated	Host-Associated	10.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.92%
Plants	Host-Associated → Plants	10.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.36%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	13.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.84%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.20%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026759	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes)	Environmental	Open in IMG/M
3300026785	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)	Environmental	Open in IMG/M
3300026841	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes)	Environmental	Open in IMG/M
3300027403	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-11 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10308062	3300000579	Forest Soil	MKRTLSVVATAILVSMMALMFLGGILKKAARVVDGLRNRSD*
Ga0062593_1004709662	3300004114	Soil	RMKRTLSAVAAAVLVSIMALMFIGGLLKKAARVVDGLRNGSG*
Ga0062595_1012297712	3300004479	Soil	MRRTVSAVAAAVLVSMMALMFLGGLLKKAARVVDGLQNGSG*
Ga0062591_1002889721	3300004643	Soil	KRTLSAVAAAVLVSMMALMFIGGLLKKAARVVDGLRNGSG*
Ga0066676_100095245	3300005186	Soil	MKRTLSVVAAAVLVSMMALMFLGGLLKKAARVVDGLHNGSGRARL*
Ga0065704_102590262	3300005289	Switchgrass Rhizosphere	MIESGRMKRTLSAVATALLLSMMALMFLGGLLKNAARIVDDLRDPPPQPPL*
Ga0065705_100223391	3300005294	Switchgrass Rhizosphere	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARVVDGLRNGSS*
Ga0065705_100298051	3300005294	Switchgrass Rhizosphere	MKRTLSAVAAAVLVSMMALMXXGGLLKNAARIXDDLRDPPPQPPL*
Ga0065705_105711061	3300005294	Switchgrass Rhizosphere	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARAVDGLRNGGG*
Ga0065707_100381464	3300005295	Switchgrass Rhizosphere	MKRTLSAVAAAVLVSMMALMFLGGLLKNAARIVDDLRDPPPQPPL*
Ga0066388_1010792791	3300005332	Tropical Forest Soil	MKRTLSAVATAVLVSMVALMFLGGLLKKAARVVDDLRDLPPPAPP*
Ga0066388_1016319114	3300005332	Tropical Forest Soil	MKRTLSVVATAILVSMMALMFLGGLLKKAARAVDSLRNGSG*
Ga0066388_1034281833	3300005332	Tropical Forest Soil	MKRALSVVAAAILVAMMALMFLGGVLKKAARAVDGLRNGS
Ga0066388_1058372252	3300005332	Tropical Forest Soil	MKRTLSAVATAVLVSMMALMFLGGLLKKAARAVDGLRNGSD*
Ga0070711_1002901233	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPQPPL*
Ga0066905_1001119123	3300005713	Tropical Forest Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARAVDGLHNGSG*
Ga0066905_1002840102	3300005713	Tropical Forest Soil	MKRTLLAVYTAVLVSMMAVMFLGGLLKKAARVVDGLRK*
Ga0066905_1003233373	3300005713	Tropical Forest Soil	MKRTLSAVATAVLVSMVALMFLGGLLKKAARVVDDLRDPPPRPPL*
Ga0066903_1003879982	3300005764	Tropical Forest Soil	MKRTLLAVATAVLVSMMALMFLGGLLKKAAHVVDGLRNGSG*
Ga0066903_1006508054	3300005764	Tropical Forest Soil	MKRVVSVIYAAVLLSMMAVMFLGGFLKKAAHVVDDVPDSPPQPLR*
Ga0066903_1010647723	3300005764	Tropical Forest Soil	MKRALSVVAAAVLVSIIALMFLGGLLKKAARVVDGLQDGSG*
Ga0066903_1035069321	3300005764	Tropical Forest Soil	MKRTLSAVATAVLVSMMALMFLGGLLKKAARVVDDLRHPPPRPPL*
Ga0066903_1051163792	3300005764	Tropical Forest Soil	MKRAFSAVATAVLVSMMALMFIGGLLKKAARVVDGLRNGSG*
Ga0066903_1076019851	3300005764	Tropical Forest Soil	LNADTMKRTLSAVVTAIPVSMMALMFLGGILKKAARVVDGLRNRSG*
Ga0066903_1076477812	3300005764	Tropical Forest Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARVVDGVHNGSG*
Ga0081455_107762151	3300005937	Tabebuia Heterophylla Rhizosphere	LLAVYTALLVSTMALMFLGGLLKGTAHAVDRLRK*
Ga0066696_109520881	3300006032	Soil	MKRTLSAVATAILMSMMALMFLGGLLKKAASVVDGLGDPLTPTPPL*
Ga0066652_1000387793	3300006046	Soil	MKRALSVVAAAVLVSIMALMFLGGLLKKAARVVDDLRNGSG*
Ga0070716_1014641442	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARVVDGLQNGSG*
Ga0075434_1015529071	3300006871	Populus Rhizosphere	RALSVVAAAVLVSIMALMFLGGLLKKAARVVDDLRNGSG*
Ga0066710_1025367483	3300009012	Grasslands Soil	VVAAAALVSILALMFLGGLLRKAARVVDDLHNGSG
Ga0075418_127415932	3300009100	Populus Rhizosphere	MKRTLSVVGTAVLVSMMALVFIGGLLKKAARVVDSLGDPLTPPWFRFRNGSG*
Ga0075418_128855592	3300009100	Populus Rhizosphere	MKRTLSAVAAAVLVSMLALMFIGGLLKKAARVVDGLRNGSG*
Ga0126380_103069962	3300010043	Tropical Forest Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARVVDDLRNGSG*
Ga0126380_118550302	3300010043	Tropical Forest Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARAIDGLHNGSG*
Ga0126380_121097853	3300010043	Tropical Forest Soil	RMKRALSAVAAAVLVSMMAVLVLGGLLKSAARVVDGLRNGSG*
Ga0126384_116426082	3300010046	Tropical Forest Soil	MKRTLSAVATALLLSMMALMFLVGLLKNAAHIVDDLRDPPPRPPL*
Ga0126384_125059741	3300010046	Tropical Forest Soil	LNADVMKRTLSAVAVAVLVSMMALMFLGGLLKNAARAVDGLRNGSR*
Ga0126382_115628872	3300010047	Tropical Forest Soil	MKRTLSAVAASVLVSMMVLMFLGGLLKNAARVVDGLRNGSG*
Ga0134080_100856903	3300010333	Grasslands Soil	VAAAVLVSMMALMFLGGLLKKAARVVDGLHNGSGRARL*
Ga0126370_113799892	3300010358	Tropical Forest Soil	MIKSGRMKRALSAVAAVVLVSMMALMFLGGLLKKAAQVVDGLHNGSG*
Ga0126377_116341732	3300010362	Tropical Forest Soil	MKRTLVAVGTAVLMSMMAVMFLGGLLKKAARAVDGLHNGSG*
Ga0126379_109305261	3300010366	Tropical Forest Soil	LNADTMKRTLSVVATAILVSMMALMFLGGILKKAARVVDGLRNRSD*
Ga0126381_1001309604	3300010376	Tropical Forest Soil	MKRTLSAVAAAVLISMMALMFLGGLLKKAARAVDGLHNGSD*
Ga0126381_1005634752	3300010376	Tropical Forest Soil	MKRTLSAVVAAVLVSMMALMFLGGLLQKAARVVDDLRDPPPRPPL*
Ga0126381_1007023611	3300010376	Tropical Forest Soil	MKRTLSAVAAAILVSMMALMFIGGLLKKAAGVVDGLRNGND*
Ga0126381_1037381622	3300010376	Tropical Forest Soil	MKRTLSAVATAVLVSMMALMFLGGLLKKAARVIDGLGD
Ga0126381_1051116331	3300010376	Tropical Forest Soil	LNADTMKRTLSAVATAILVSMMALMFLGGILKKAARVVDGLRNRSG*
Ga0134124_124466251	3300010397	Terrestrial Soil	RRTLSAVAAAILLSMMALMFLGGLLKRAARSVDDLHNGSG*
Ga0126383_103723623	3300010398	Tropical Forest Soil	MKRTLIATAVLVSMMVVMFLGGLLKKAARVVDDLG
Ga0126383_106437372	3300010398	Tropical Forest Soil	LNADTMKRTLSVVATAILVSMMALMFLGGILKKAARVVDGLRNRSG*
Ga0126383_133906941	3300010398	Tropical Forest Soil	MKRTLSTVATAVLLSMMAVMFLGGLLKKAARVVDGLGDSLTP
Ga0137364_100068304	3300012198	Vadose Zone Soil	LNADAMKRALSVVAAAVLVSIMALMFLGGLLKKAARVVDDLRNGSG*
Ga0137382_107092222	3300012200	Vadose Zone Soil	MKRTLSAVAAAVLVSMMALMFFGGLLKKAARVVDDLRNGSG*
Ga0137365_101834181	3300012201	Vadose Zone Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG*
Ga0137363_100344434	3300012202	Vadose Zone Soil	LNADAMKRALSAVAAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG*
Ga0137372_104154212	3300012350	Vadose Zone Soil	MKRTLSVVAAAVLVSMMALMFLGGLLKKAARVVDGLHNGSG*
Ga0137366_101219613	3300012354	Vadose Zone Soil	MKRTFSVVGTAVLVSMMALMFLGGLLKKTARVVDSLGDPLTPP*
Ga0137358_110275731	3300012582	Vadose Zone Soil	LNADAMKRALSVVAAAILVSMMALMFLGGLLKKAARVVDDLHNGSG*
Ga0157301_102838182	3300012911	Soil	MKRTLLAVSTTVLMSMMALMFLGGLLKKAARVVDGLRNGSG*
Ga0157302_104391952	3300012915	Soil	LMKRTLSAVATALLLSMMALMFLGGLLKNAARIVDDLRDPPPRPPL*
Ga0137394_101763441	3300012922	Vadose Zone Soil	MKRTLSVVAAAVLVSMMAVMFLGGLLKKAARAVDGL
Ga0126375_102525182	3300012948	Tropical Forest Soil	LNADAMKRTLSAVAAGILVSMMALMFVGGLLKKAARVVDDLRD
Ga0164304_110077611	3300012986	Soil	GIDAYQFLKIAAAAVLLSMMAVMFLGGLLKKAASVVVDVRNGSD*
Ga0164305_121321373	3300012989	Soil	MKRALSAVAAAVLMSMMALMFLGGLLKKAARVVDSLNDSLTPPARP
Ga0157375_127477341	3300013308	Miscanthus Rhizosphere	MRRTLSAVAAAILLSMMALMFLGGLLKRAARSVDD
Ga0173483_104990053	3300015077	Soil	LNPDAMKRTLSAAAAAILVSMMALMFLGGLLKKAARVVDGLRNGSG*
Ga0132258_103394056	3300015371	Arabidopsis Rhizosphere	MKRTLSAVAAAVLVSIMALMFIGGLLKKAARVVDGVRNGSG*
Ga0132258_120590592	3300015371	Arabidopsis Rhizosphere	MRRTVSAVAAAVLLSMMALIFLGGLLKKAARVVDGLHNGSG*
Ga0132258_125073052	3300015371	Arabidopsis Rhizosphere	MKRTLSTVATAVLLSMMAVMFLGGLLKKAARVVDGLGDPLTPPQPPL*
Ga0132258_137565142	3300015371	Arabidopsis Rhizosphere	VIESGGMKRTLSAVAAAVLVSMMALMFLGGLLKKAARAVDDLRNGSRF*
Ga0132255_1000376515	3300015374	Arabidopsis Rhizosphere	MKRTLSAVAAAVLVSIMALMFIGGLLKKAARAVDGLRNGSG*
Ga0182036_106653792	3300016270	Soil	MKRTLSAVAAAVLVSMMALMFIGGLLKKAARVVDRLHNGSG
Ga0182036_111539372	3300016270	Soil	MKRTLLAVYTAALVLMMALMFLGGLLKKTAQVVDGFRK
Ga0182041_104054073	3300016294	Soil	LNADTMKRTLSAVAAAVLLSMMALMFLGGLLKKAARVVDSLHNGSG
Ga0182041_113775002	3300016294	Soil	MKRTLSAVATALLLSMMALMFLGGLLKNAARVVDGLRNGSG
Ga0182033_114788991	3300016319	Soil	MKRALSAVAAAVLVSMMVLMFLGGLLKKAARVVDGLRNGSG
Ga0182033_121710331	3300016319	Soil	VKRTFSAVAAAVLVSMMALMFVGGLLKKVARVVDG
Ga0182040_103215352	3300016387	Soil	MKRTRLAVYTAALVLMMALMFLGGLLKKTAQVVDGFRK
Ga0182040_107375193	3300016387	Soil	MKRTLSAVATAVLVSMMALMFLGGLLKKAARVVDDLRDPPPRPPL
Ga0182037_105406831	3300016404	Soil	MKRALSAVADAVLLSMMALMFVGGLLKQAARAVDGLRNGSR
Ga0182037_117995571	3300016404	Soil	MTRALLALGTAVLMSMMVAMFRGGLLKKAARVVDGLRNGSG
Ga0182039_119723021	3300016422	Soil	ISLMKRTLSVIGAAVLVSMMALMFLGGLLKKAARVVDSLHNGSG
Ga0182038_101231503	3300016445	Soil	MKRTLSAVAAAVLLSIMALTFLGGLLKKAARIVDDL
Ga0173479_103146551	3300019362	Soil	MKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0193722_10003981	3300019877	Soil	MRRTVSAVAAAILLSMMALIFLGGLLKKAARVVDGLENGSG
Ga0193722_10294593	3300019877	Soil	MRRTLSAVAAAILVSMMALMFLGGVLKKAARVIDGLHNGSG
Ga0193727_10323784	3300019886	Soil	MKRTLSVVAAAVLVSMMAVMFLGGLLKKAARAVDGLRNGSD
Ga0126371_112958982	3300021560	Tropical Forest Soil	MKRALSAVAAAVLISMMALMFLGGLLKKAARAVDGLHNGSD
Ga0126371_113679043	3300021560	Tropical Forest Soil	MKRTLSVIGAAILVSMMALMFLGGLLKKAARVVDGLRNGSG
Ga0247688_10549451	3300024186	Soil	MKRTLSAVAAAVLVSMMAVMFLGGLLKKTARVVDGLRNGSG
Ga0207703_113778862	3300026035	Switchgrass Rhizosphere	VKRTLLAVYAAVLVSLMAVTFLGGLLKKAAQVVDGFRK
Ga0207527_1019291	3300026759	Soil	NRRMKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207496_1031452	3300026785	Soil	RTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207490_10062541	3300026841	Soil	RRMKRTLSAVAAAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0207609_1017082	3300027403	Soil	MRRTLLAIGIAVLVSMMALMFLGGLLKKAARIVDDLRDPPPRPPL
Ga0247822_110466982	3300028592	Soil	LNADAMKRTLSAVAAAILVSMMALMFLGGLLKKAARAVDGLHNGSS
Ga0307279_101018223	3300028709	Soil	MRRTLSAVAAVILVSMMALMFLGGVLKKAARVIDGLHNGSG
Ga0307278_104461982	3300028878	Soil	MLNAMKRALSVVAAAILVSMMALMFVGGLLKKAARVVDDLHNGSG
Ga0310915_102874531	3300031573	Soil	MKRTLSAVAAAVLLSMMALMFLGGLLKKAARVVDSLHNGSG
Ga0307473_104347314	3300031820	Hardwood Forest Soil	DAIIGLMKRTLSAVAAAVLVSIMALMFLGGLLKKAARIVDGLRNGSG
Ga0306925_104151831	3300031890	Soil	MKRTLSAVAAAVLLSMMALMFLGGLLKKAARVVDSLHNGS
Ga0306925_107578543	3300031890	Soil	MKRTLSAVATALLLSMMALMFLGGLFKNAARIVDDLCDPPSRPPL
Ga0306925_122691671	3300031890	Soil	MKRTLSLVGTAVLVSMIALMFLGGLLKKAARVVDS
Ga0318520_108796201	3300031897	Soil	SVVTAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG
Ga0306921_100907971	3300031912	Soil	MKRTLSAVATAILVSMMALMFLGGLLKKAARVVDSLRNGSG
Ga0306921_117343811	3300031912	Soil	MKRTLSAVAAAVLVSMMALMFVGGLLKKAARIVDGLHTGSG
Ga0310916_104819293	3300031942	Soil	MKRTLSVIGAAVLVSMMALMFLGGLLKKAARVVDGLRNGSG
Ga0310916_110128001	3300031942	Soil	MKRALLALGTAVLMSMMVAMFRGGLLKKAARVVDGLRNGSG
Ga0310910_110197923	3300031946	Soil	ESGLMKRTLSAVATALLLSMMALMFLGGLFKNAARIVDDLCDPPSRPPL
Ga0310909_106697671	3300031947	Soil	RTLSVIGAAVLVSMMALMFLGGLLKKAARVVDGLRNGSG
Ga0306922_120149511	3300032001	Soil	MKRTLSAVAAAVLVSMMALMFIGGLLKKAARVVDGLRNGSG
Ga0318510_102481953	3300032064	Soil	MKRTLSAVATAVLVSMMALMFLGGLLKKAARVVDDLRDPPPR
Ga0307471_1030034081	3300032180	Hardwood Forest Soil	NADAMKRALSGVAAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG
Ga0307472_1001989662	3300032205	Hardwood Forest Soil	LNADAMKRALSAVAAAVLVSMMALMFLGGLLKKAARIVDGLRNGSG
Ga0306920_1002184446	3300032261	Soil	AVATAVLVSMMALMFLGGLLKKAARVVDDLRDPPPRPPL
Ga0306920_1008263941	3300032261	Soil	MKRTLSVVGTAVLISMMALMFLGGLLKKAARVVDRLGDPLTP
Ga0310914_107291562	3300033289	Soil	MKRTLSAVAAAVLLSMIALMFLGGLLKKAARIVDGLHNGSG
Ga0310810_105617282	3300033412	Soil	MKRTLSAVAAAVLVSIMALMFIGGLLKKAARVVDGLRNGSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075211

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences