3300026766: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026766
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091542 | Ga0207450
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25781940
• Sequencing Scaffolds: 33
• Novel Protein Genes: 36
• Associated Families: 36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	6
Not Available	7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas fulva	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000365	Metagenome / Metatranscriptome	1227	Y
F001604	Metagenome / Metatranscriptome	664	Y
F001662	Metagenome / Metatranscriptome	655	Y
F001890	Metagenome / Metatranscriptome	622	Y
F002428	Metagenome / Metatranscriptome	560	Y
F003996	Metagenome / Metatranscriptome	458	Y
F004468	Metagenome / Metatranscriptome	437	Y
F005188	Metagenome / Metatranscriptome	409	Y
F006654	Metagenome	367	Y
F012488	Metagenome / Metatranscriptome	280	Y
F015542	Metagenome / Metatranscriptome	254	Y
F017538	Metagenome / Metatranscriptome	240	Y
F020547	Metagenome / Metatranscriptome	223	Y
F022685	Metagenome / Metatranscriptome	213	N
F023731	Metagenome / Metatranscriptome	209	N
F024659	Metagenome / Metatranscriptome	205	N
F025864	Metagenome / Metatranscriptome	200	Y
F033138	Metagenome	178	Y
F039361	Metagenome / Metatranscriptome	164	Y
F040398	Metagenome / Metatranscriptome	162	Y
F042319	Metagenome / Metatranscriptome	158	Y
F045732	Metagenome / Metatranscriptome	152	N
F050525	Metagenome / Metatranscriptome	145	N
F056922	Metagenome / Metatranscriptome	137	N
F056978	Metagenome / Metatranscriptome	137	N
F059114	Metagenome	134	N
F062100	Metagenome / Metatranscriptome	131	N
F066182	Metagenome / Metatranscriptome	127	N
F068533	Metagenome	124	N
F071393	Metagenome	122	N
F071396	Metagenome / Metatranscriptome	122	N
F088958	Metagenome	109	Y
F091232	Metagenome	107	N
F097765	Metagenome	104	Y
F098132	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207450_100221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2396
Ga0207450_100525	All Organisms → cellular organisms → Bacteria	1759
Ga0207450_100576	All Organisms → cellular organisms → Bacteria	1688
Ga0207450_100703	Not Available	1536
Ga0207450_101173	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1237
Ga0207450_101332	All Organisms → cellular organisms → Bacteria	1158
Ga0207450_101384	All Organisms → cellular organisms → Bacteria	1133
Ga0207450_101742	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1006
Ga0207450_101762	Not Available	1001
Ga0207450_101818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	986
Ga0207450_101879	All Organisms → cellular organisms → Bacteria	970
Ga0207450_102054	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	926
Ga0207450_102091	Not Available	917
Ga0207450_102168	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	903
Ga0207450_102244	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	885
Ga0207450_102296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872
Ga0207450_102332	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	865
Ga0207450_102762	Not Available	795
Ga0207450_102956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	767
Ga0207450_102987	Not Available	762
Ga0207450_103059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	753
Ga0207450_104015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	655
Ga0207450_104079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648
Ga0207450_104121	All Organisms → cellular organisms → Bacteria	645
Ga0207450_104560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	616
Ga0207450_105042	All Organisms → cellular organisms → Bacteria → Proteobacteria	588
Ga0207450_106133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535
Ga0207450_106268	Not Available	529
Ga0207450_106465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	521
Ga0207450_106471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	521
Ga0207450_106656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514
Ga0207450_106875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas fulva	507
Ga0207450_106884	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207450_100221	Ga0207450_1002211	F071396	MNSALAQVVIPYGNFDDGFEKYLVAAITFLLLCFAVWQYL
Ga0207450_100221	Ga0207450_1002215	F040398	NFLRLCVATSSKVLSERRDDLVKFVAAEMDAYRFALANRAETIKVSHEMTHAKPDDKRAEFITDEAIKNKQIDPVLSIPLDRLDWMQNLFVKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207450_100525	Ga0207450_1005252	F020547	MAAGGPTSALLQEIRVVDVSNENVSLYFLLLKMAFYAERRVAFIQQALVNGSVR
Ga0207450_100576	Ga0207450_1005763	F091232	MSNGIVSLTLGVFLLLVGGCGQKGGIEGEYVDVDSPDLSMIISGGRFQQGGADIHTTGTYMMRQINEKTYELEVSYTNPKLQGHKSTITIVRDGDFITAKNRYEERKFKRK
Ga0207450_100703	Ga0207450_1007032	F050525	MRGFAGLLVYLVGVSAVFSIGIVGLMALQSPAERTPSSPPVAAASHAESLAKPVKRPIDDKKTAHRNQKHKKEHVTRKQPHEAPFIGEGRNAYGYVEEPRRIDPNRFLFFGR
Ga0207450_100842	Ga0207450_1008421	F059114	VICVVFFLCIFGARMRSRLIYVVSRAVLLFLSVVAAIASMEAISFGFISVTMTPSREGFLWVSLAIVLVAFAALGIRAALDWRLSYWILFPAIFATLIFATFGTSILSLL
Ga0207450_101173	Ga0207450_1011731	F005188	MRKILITLAVLIAVVIVFLATWIFYGYQISLFLDRFGTIEMTSARINSIAYQGNGTGGIFHVNDLELSLNDRNGPAPSIGTTKNDQLALADRGKVFAFGPVRTEAENLATL
Ga0207450_101332	Ga0207450_1013323	F012488	MSLLRTSRLRLLAGFVVLFAFGGDIVADSIVDSRGEHCAAQTCPADSHHEKAPCSHCSCAVHNGSVIAANNGIRVGADVQPSVFILISDETARVGPPAAIDHPPQLA
Ga0207450_101384	Ga0207450_1013841	F045732	PRRCARLRLRGPNVVSKMRHRRRRVFIDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA
Ga0207450_101742	Ga0207450_1017422	F088958	CCCTLIRSAGAASASIFGRAASNLATRNSACRSMVSARNRRNSLISLVFCAWRNSAREFHGHGCKLPIPRSNAGSFAPRLDMKLTSFGKLSSNGPRRPLGYQMKWPMPSDAKSSPWFHEVSPEIVPPHSFCQTLFPTFKASLCESVKPCVSSGQSAIIPVAATANATPASPNRWQSCFLDVRHLSISVRLSAATNLKLDRRGNTIL
Ga0207450_101762	Ga0207450_1017622	F071393	LDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPETAAARAAG
Ga0207450_101818	Ga0207450_1018183	F004468	MTTRRAAAVFCFANYESTTISKKTLCQLQDCEAQERCARDLQKPAAQATPGMITAVVKY
Ga0207450_101879	Ga0207450_1018791	F000268	FVSKASGRLGGPIRFEFYHDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYTAFASDGHGGSSGVTFGFGKNGKMIFPDSFDE
Ga0207450_102054	Ga0207450_1020541	F025864	GALQAHLASHPAAQPGQQLMNPAPTMTYETAGPQHIEVEQFDGFGPMGTASLGDW
Ga0207450_102091	Ga0207450_1020912	F062100	MALDFTIITDVRQRFGDMIRDEKASLRERESGIEDDAPFVGWEKSFAFRCPSVDRRQFALLLFQTLGVSVRQGLEINGQTIFGGIAPSVDFESRILGSGSEAHQDRSAIARWNGNVMLIHPNVLQESNILRVRAAEMTAGNVDDFVMDNVVVVFKTGRSALVNSGSVAATAKPRK
Ga0207450_102168	Ga0207450_1021681	F001662	HVLQLRRRVERIPSQGVAAKHIIAMKLSTEAIVAVAVAVVFVLLSFGAIAREQGQGPARAGHTGYIAASSVNLSQVAASETDVLGFY
Ga0207450_102244	Ga0207450_1022442	F024659	IGTIAAAVLLNPLRRSETDIRGWLLHQAPLGSSRQEVMVLVARRGWKFHPEYRGRFINKSVPVGGFGAELGTYLGVRDVKVDAYWKFSGSDNLDEVYVNKWKEGF
Ga0207450_102296	Ga0207450_1022962	F017538	RPDTSWPAPPMTDSLTLVRASRNRDGEWSSDDYDVFEGKQLVGRITLTPQAPEGRPWFWMITARPESSQNQGYAVSREQAMLEFKARWLNPARL
Ga0207450_102332	Ga0207450_1023323	F003996	SIGFGPGNDEITLTSWNSVRTLNIRDGKVSPVRQPTFRDQFMRLVVGPGDFARRLVAKSLYQRVEIAKGARMQDPAEPVVFRGSTGIPQFSLDGQRLLILSGGMFNVYDSLRLIDVSRLYRPQKPAPQKLEEKPAPPWLADIASAVSASDPSQDGSLTTLEDVRRKYPKSKAGDAYESVWKRFFPDESKR
Ga0207450_102762	Ga0207450_1027622	F022685	MTLMKAILGLAFGIALMSALQTVGVWSLQEHIKSQSNAGLPIGNTPVVGNFDADALKNGILPKLGPIDTSEGQRLAIEGAARR
Ga0207450_102956	Ga0207450_1029562	F015542	MQQAPGQQAPPPQQPASLDEIVLALVSVIIAAIKSRYFMIFSC
Ga0207450_102987	Ga0207450_1029871	F001604	ANTRKDKYSAYMTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINTGGRSWLEERRRKRNA
Ga0207450_103059	Ga0207450_1030591	F001890	GVGRVDDLIARSRTEVRQASETITAAGAQAQANNPVLNALNERLETSLAPRIAQMQQVLAPVRDAVGTVGNAVSLLNSLPMMADRAPRLAALDEAFNRLEELSADAKQLRGTLRELVAGPNGDVTAETLASLNALTQRIDTRLAKVQTNVQGVRDDIAALQVRLNTRKSRLLLAFNLVALLSTLMLTWIVYTQIVVILHHWTRIRRPATSGTNSSKVSSTATPPT
Ga0207450_104015	Ga0207450_1040151	F056978	RRTKSKKQQGRVRDLKPVKEVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIAHILEALQTLETWVPMSRADAPQYAWAYRKFVEITTRLRQEARSR
Ga0207450_104079	Ga0207450_1040792	F042319	GTDQEGPMTDITYQTATAGIASPSALLSRIAAWCTHFAEGTREGREIAARYHALAQLSSPELARRGLNRHMIARVALTGY
Ga0207450_104121	Ga0207450_1041212	F002428	MNEGDESLPLGNPPVLEHSTPTGATEVAQRLVAFPFTPPDVKLKDKEPLSSSNDWFTKHDKNKIDELGSLDFFASTGLESVGVVPKLHNTSA
Ga0207450_104560	Ga0207450_1045602	F000365	TEIAKVSASKNAPAAGESGNQRPKRRKDKLIRLNDLVPKQDVTGGQRLLFGVTDKTQSTNNPTKDK
Ga0207450_105042	Ga0207450_1050422	F068533	AAIALFLASVQFARSDQGLTGDVRTTFIEAATRSCLKTQLDAPTNKDVPVSALYDYCKCNASGMADKTSNDEVKTLEATGSEEKYRTAMQTRMESSAKTCLEEIRKSLSK
Ga0207450_106133	Ga0207450_1061331	F006654	MKTPTTSSMLIALLLAFLALGVTKAQAFIDIYRPVGITFGQTARVTAANTGTRAIIISGTFLDSEGTVRAQFDSQVIEPGKMMSFDLNADDIVRENNRIQIRVVISGDTSRGLLTSIEVFENLTGKTTVFIGDPGL
Ga0207450_106268	Ga0207450_1062681	F066182	PHGEGAAQLPPGPAEGGCQARKSMLGRGEDPRLVQVTLGTPVCMSSVDHAAELVGGYEALGQRLGVRTEQVMDWSLGLVSPNTATLLFVLDVIMHETQQLSRAAVAFELAGQVLAKARRSSKAT
Ga0207450_106465	Ga0207450_1064651	F039361	MVVRVTERERATILAALRRWLSYPAAREADPIATNHGKHKPLDDGEIQRLCRRLSETEKRSNGTPLRRHSNNGA
Ga0207450_106471	Ga0207450_1064712	F033138	MGVTSAGGDAEMCAVRSLESFVPIGLRGFFAVATRGGVWRLPVFFVAVGA
Ga0207450_106656	Ga0207450_1066561	F098132	VGVLSFLIGLAGHLKENYHYRGEISSAGFTIAIILGAIGVVLFLVSLRKKRG
Ga0207450_106875	Ga0207450_1068751	F056922	AAVAALLLVCLAGCGTEEPLSEADKSLFLRPTDLVRYGFDYDDPASYEKFSKSRQIDGAYHLKYEFQPAKSERRRVFIYASVSVAQSESDAALNESAEAVGMLIGLKASGVEERELGVKSGNDQSKLRLLVKGDKPLGNIFTARDGRKTYFLVLTGFYFDDADDWKKLV
Ga0207450_106884	Ga0207450_1068841	F023731	LSIGEADFGRVPIVGPLHFVFNILAPRFHTDEPSTMTVNHRMAGSLLYLEDLKLVSEHAHVEAGGNIDLARESTQLNARGGLRKLPGLITVLFTSLLEFKGEGPVDNVRWSIKGFPGFHPVVNAPRKTTRTADVAEKEADRAVKGLIELPGKVLEDK
Ga0207450_106911	Ga0207450_1069111	F097765	SERVKLLLEKRKRERIFGVTVFLLGIIMLIAFGALALVSYRAWQLSKARVEQLVEKGRIFREKANTDLVDETNPIKDVTALRNLALALNCNPRDTEAARLASNLLLQHVWCPPAAPAVTYQKDALLAATFIPGGSNNEIFAVGGDGQLLFWNGGRSMSPTPQSLFEKP