Metagenome Family F098132

Basic Information
Family ID	F098132
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	LIGLAGHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Number of Associated Samples	96
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	97.12 %
% of genes from short scaffolds (< 2000 bps)	94.23 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (33.654 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.231 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.46% β-sheet: 0.00% Coil/Unstructured: 40.54%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13801	Metal_resist	44.23
PF07813	LTXXQ	12.50
PF04542	Sigma70_r2	4.81
PF01541	GIY-YIG	0.96
PF00501	AMP-binding	0.96
PF10263	SprT-like	0.96
PF08281	Sigma70_r4_2	0.96
PF01019	G_glu_transpept	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	50.00
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	4.81
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	4.81
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	4.81
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	4.81
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	96.15 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	95.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	83.65 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	11.54 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	83.65 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	10.58 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	83.65 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	10.58 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	83.65 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	10.58 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	83.65 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	8.65 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig16416	All Organisms → cellular organisms → Bacteria → PVC group	1332	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100186597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300000890\|JGI11643J12802_10343917	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	664	Open in IMG/M
3300003203\|JGI25406J46586_10100889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300003990\|Ga0055455_10140893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300005293\|Ga0065715_10027387	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300005332\|Ga0066388_103842704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300005332\|Ga0066388_108666849	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300005366\|Ga0070659_100582666	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	960	Open in IMG/M
3300005454\|Ga0066687_10181769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1135	Open in IMG/M
3300005543\|Ga0070672_101322264	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005547\|Ga0070693_101361180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300005552\|Ga0066701_10443814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300005578\|Ga0068854_101116664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300005844\|Ga0068862_102760697	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300006028\|Ga0070717_10512708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1084	Open in IMG/M
3300006032\|Ga0066696_10187858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1311	Open in IMG/M
3300006163\|Ga0070715_10283359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	879	Open in IMG/M
3300006175\|Ga0070712_100627749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	911	Open in IMG/M
3300006797\|Ga0066659_11771108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300006854\|Ga0075425_101677896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	715	Open in IMG/M
3300006881\|Ga0068865_101049699	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300009094\|Ga0111539_12274666	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300009098\|Ga0105245_12090915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300009100\|Ga0075418_12027825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300009101\|Ga0105247_11633178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300009101\|Ga0105247_11796372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300009174\|Ga0105241_12697641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300009551\|Ga0105238_12970070	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009792\|Ga0126374_10668589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	777	Open in IMG/M
3300009792\|Ga0126374_11123823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300010304\|Ga0134088_10707174	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300010322\|Ga0134084_10037348	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1386	Open in IMG/M
3300010323\|Ga0134086_10421727	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300010323\|Ga0134086_10434126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300010361\|Ga0126378_12172609	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300010364\|Ga0134066_10136509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300010373\|Ga0134128_10460562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1418	Open in IMG/M
3300010376\|Ga0126381_100882310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1287	Open in IMG/M
3300010398\|Ga0126383_13514071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300012022\|Ga0120191_10058839	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693	Open in IMG/M
3300012201\|Ga0137365_10039822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3588	Open in IMG/M
3300012207\|Ga0137381_10701114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	880	Open in IMG/M
3300012208\|Ga0137376_10497953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1057	Open in IMG/M
3300012210\|Ga0137378_10081066	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2960	Open in IMG/M
3300012285\|Ga0137370_10969388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300012349\|Ga0137387_11279047	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300012363\|Ga0137390_10891519	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	844	Open in IMG/M
3300012484\|Ga0157333_1024063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300012582\|Ga0137358_10283999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1124	Open in IMG/M
3300012882\|Ga0157304_1039287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	687	Open in IMG/M
3300012891\|Ga0157305_10301451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300012913\|Ga0157298_10093806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	798	Open in IMG/M
3300012922\|Ga0137394_10787469	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	797	Open in IMG/M
3300012944\|Ga0137410_11869480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300012948\|Ga0126375_11440687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300012961\|Ga0164302_10802186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300012975\|Ga0134110_10341624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300014166\|Ga0134079_10332156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	686	Open in IMG/M
3300014745\|Ga0157377_10125576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1560	Open in IMG/M
3300015054\|Ga0137420_1136462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	822	Open in IMG/M
3300015371\|Ga0132258_10343564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3688	Open in IMG/M
3300015371\|Ga0132258_13975410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1004	Open in IMG/M
3300015373\|Ga0132257_100110917	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3172	Open in IMG/M
3300015373\|Ga0132257_101266030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	935	Open in IMG/M
3300015373\|Ga0132257_103031193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300015374\|Ga0132255_103683372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	651	Open in IMG/M
3300016294\|Ga0182041_11706513	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300016357\|Ga0182032_11229416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300018054\|Ga0184621_10138109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	876	Open in IMG/M
3300018081\|Ga0184625_10510167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	605	Open in IMG/M
3300019361\|Ga0173482_10348443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300019879\|Ga0193723_1135412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300019880\|Ga0193712_1132669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	521	Open in IMG/M
3300019996\|Ga0193693_1044782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300019997\|Ga0193711_1049157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	506	Open in IMG/M
3300021078\|Ga0210381_10148901	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	793	Open in IMG/M
3300021560\|Ga0126371_12135814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300022534\|Ga0224452_1069155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1063	Open in IMG/M
3300022756\|Ga0222622_10305788	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1095	Open in IMG/M
3300025910\|Ga0207684_10921123	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300025915\|Ga0207693_10737306	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762	Open in IMG/M
3300025929\|Ga0207664_10349926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1308	Open in IMG/M
3300025942\|Ga0207689_10155034	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1888	Open in IMG/M
3300025961\|Ga0207712_11503152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300026078\|Ga0207702_10042314	All Organisms → cellular organisms → Bacteria	3821	Open in IMG/M
3300026078\|Ga0207702_11759834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300026118\|Ga0207675_102444845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300026342\|Ga0209057_1029964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2874	Open in IMG/M
3300026343\|Ga0209159_1144957	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	945	Open in IMG/M
3300026494\|Ga0257159_1092448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300026498\|Ga0257156_1009612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1833	Open in IMG/M
3300026523\|Ga0209808_1167259	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300026548\|Ga0209161_10158582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1300	Open in IMG/M
3300026766\|Ga0207450_106656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300027560\|Ga0207981_1062581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300028707\|Ga0307291_1211588	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300031545\|Ga0318541_10511117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300031719\|Ga0306917_10193738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1535	Open in IMG/M
3300031820\|Ga0307473_10619303	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	750	Open in IMG/M
3300031897\|Ga0318520_10911257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300031941\|Ga0310912_10355248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1139	Open in IMG/M
3300031947\|Ga0310909_10329125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1282	Open in IMG/M
3300032076\|Ga0306924_11955334	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.08%
Host-Associated	Host-Associated	25.96%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.31%
Plants	Host-Associated → Plants	25.96%
Aquatic	Environmental → Aquatic	5.77%
Modeled	Engineered → Modeled	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Sediment	Environmental → Aquatic → Sediment	3.85%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Marine	Environmental → Aquatic → Marine	0.96%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026766	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098132

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0416.00001480	2166559005	Simulated	LAFFAFLIGLAGHLKENYHYRGEISSAGFTIAIILAAIGVVLFLVSLRKKRG
INPhiseqgaiiFebDRAFT_1001865972	3300000364	Soil	AGHLKENYHSKSEIASTGFTAAVILAAIGVILFLFSLRKKRG*
JGI11643J12802_103439171	3300000890	Soil	VLSFLIGLAGHLKENYHHRGEISCTGFTIAIILAAIGVVMFLVSLRKKQG*
JGI25406J46586_101008891	3300003203	Tabebuia Heterophylla Rhizosphere	LAGAIKENYHYRGEISSTGFTIALVLGAIGVMLFLVSLKKKRD*
Ga0055455_101408932	3300003990	Natural And Restored Wetlands	MVTVGLLCFLIGLAGHLKADYHSSGEIAATGFTIAAILAGIGIILFLVSLRKKQG*
Ga0065715_100273873	3300005293	Miscanthus Rhizosphere	AGHLKENYHHRGEISSTGFTIAIILAAIGVVMFLVSLRKKQG*
Ga0066388_1038427041	3300005332	Tropical Forest Soil	LIGIAGHFKSEYHHRGEISSTGFTIAIILAAVGVVMFLVSSRKKRG*
Ga0066388_1086668492	3300005332	Tropical Forest Soil	IGIAGHFKSEYHHRGEISSTGFTVAIILAAVGVVMFVVSLKKKRG*
Ga0070659_1005826661	3300005366	Corn Rhizosphere	FLIGLAGALKENYHHRGEISSTGFTIAIVLAAIGVLMFLISLRKKRG*
Ga0066687_101817693	3300005454	Soil	MFCVGVLSFLIGLAGALKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG*
Ga0070672_1013222641	3300005543	Miscanthus Rhizosphere	GLAGHLKANYHYRGEIASTGFTIAIVLAGIGVVLFLVSLRKKRD*
Ga0070693_1013611802	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VLSFLIGLAGHLKENYHHRGEISSTGFTIAIILAAIGVVMFLVSLRKKQG*
Ga0066701_104438141	3300005552	Soil	FLIGLAGHLKEDYHSQAEIASTGFTAAVILAAIGVILFLFSLRKKRG*
Ga0068854_1011166641	3300005578	Corn Rhizosphere	ANYHYRSEISSTGFTIAIILAGIGVVLFLVSLRKKRD*
Ga0068862_1027606972	3300005844	Switchgrass Rhizosphere	SFCVGVLAFLIGLAGHLKENYHYRGEISCTGFTIAIILAAIGVVLFLVSLSKKRG*
Ga0070717_105127081	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLSFLIGLAGHLKENYHYRGEISCTGFTIAIILAGIGVVLFLVSLRKKRG*
Ga0066696_101878584	3300006032	Soil	FCVGVLSFLIGLAGALKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG*
Ga0070715_102833591	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	NYHYRGEISCTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0070712_1006277491	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0066659_117711082	3300006797	Soil	FCVGVLSFLIGLAGHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRD*
Ga0075425_1016778961	3300006854	Populus Rhizosphere	FCIGVLSFLIGLAGALKENYHLRGEISSTGFTIAIILAAIGVILFLVSLRKKRG*
Ga0068865_1010496991	3300006881	Miscanthus Rhizosphere	YHYRGEISCTGFTIAIILAGAGVVLFLVSLKKKRG*
Ga0111539_122746662	3300009094	Populus Rhizosphere	SFLMGVAGHFKSECHHRGEISSTGFTIAIILAAIGVIMFLVSLRKKRG*
Ga0105245_120909152	3300009098	Miscanthus Rhizosphere	AVLCFLIGIAGHFKSEYHHRGEISSTGFTVAIILAAVGVVMFVVSLKKKRG*
Ga0075418_120278251	3300009100	Populus Rhizosphere	HSRGEISCTGFTIAIILAAIGIVMFLVSLRKKRG*
Ga0105247_116331781	3300009101	Switchgrass Rhizosphere	NYHYRGEISSAGFTIAIILAAIGVVLFLVSLRKKQG*
Ga0105247_117963722	3300009101	Switchgrass Rhizosphere	LAFLIGLAGHLKANYHYRSEISSTGFTIAIILAGIGVVLFLISLRKKRG*
Ga0105241_126976411	3300009174	Corn Rhizosphere	LAGHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0105238_129700702	3300009551	Corn Rhizosphere	FLIGLAGHLKANYHYRSEISSTGFTIAIILAGIGVVLFLISLRKKRG*
Ga0126374_106685891	3300009792	Tropical Forest Soil	AGHFKSEYHHRGEISSTGFTIAIILAAIGVVMFFVSVKKKRG*
Ga0126374_111238232	3300009792	Tropical Forest Soil	HSRGEISSAGFTVAIILAAIGVVLFLVSLRKKRG*
Ga0134088_107071741	3300010304	Grasslands Soil	LIGLAGHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0134084_100373481	3300010322	Grasslands Soil	YHGRAEISSTGFTIAILLAAIGGILFLVSLKKKSG*
Ga0134086_104217272	3300010323	Grasslands Soil	IGLAGALKENYHYRGEISSTGFTIAIILAGIGVVMFLVSLRKKRG*
Ga0134086_104341262	3300010323	Grasslands Soil	LAGALKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG*
Ga0126378_121726092	3300010361	Tropical Forest Soil	VLSFLIGLAGALKENYHSRGEISSTGFTIAIILAGIGVVMFLVSLRKKRG*
Ga0134066_101365091	3300010364	Grasslands Soil	NYHYRGDISSTGFTIAIILAAIGVVMFLVSLRKKRG*
Ga0134128_104605624	3300010373	Terrestrial Soil	LAFLIGLAGHLKANYHYRSEISSTGFTIAIILAGIGVVLFLISLRKKRR*
Ga0126381_1008823103	3300010376	Tropical Forest Soil	CVGVLSFLIGLAGHFKSEYHHRGEIASTGFTIALILAAIGVVMFLVSLRKKRG*
Ga0126383_135140712	3300010398	Tropical Forest Soil	WVAILSFLIGIAGHFKSEYQHRGEISSTGFIIAIILAAAGIVMFVVSLKKKRG*
Ga0120191_100588391	3300012022	Terrestrial	IGLAGALKENYHHRGEISSTGFTIAIILAAIGVVLFLVSLKKKRG*
Ga0137365_100398227	3300012201	Vadose Zone Soil	SFLIGLAGRLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0137381_107011142	3300012207	Vadose Zone Soil	GVLSFLIGLAGHLKENYHLRAEISSTGFTIAIILAAIGVVLFLVSLRKKRD*
Ga0137376_104979533	3300012208	Vadose Zone Soil	VLSFLIGLAGHLKENYHHRAEISATGFTAAAVLAGIGIILFLFSLRKKRG*
Ga0137378_100810666	3300012210	Vadose Zone Soil	VGVLSFLIGLAGHLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0137370_109693882	3300012285	Vadose Zone Soil	LSFLIGLAGALKENYHYRGEISSTGFTIAIILAAIGVVTFLVSLRKKQG*
Ga0137387_112790471	3300012349	Vadose Zone Soil	LKENYHHRGEISSTGFTIAIILAAIGVLMFLVSLKKKRG*
Ga0137390_108915193	3300012363	Vadose Zone Soil	GVLSFLIGLAGYLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSFRKKRG*
Ga0157333_10240631	3300012484	Soil	LAGHLKENYHYSGEISCTGFTIAIILAAIGVVLFLVSLRKKQG*
Ga0137358_102839993	3300012582	Vadose Zone Soil	HRKENYHFRGEISATGFTAAAVLAGIGIILFLFSLRKKRG*
Ga0157304_10392871	3300012882	Soil	YHYRGEISCTGFTIAIILAGIGVVLFLVSLRKKRG*
Ga0157305_103014512	3300012891	Soil	LKANYHYRGEIASTGFTIAIVLAGIGVVLFLASLRKKRD*
Ga0157298_100938061	3300012913	Soil	VLSFLIGLAGHLKENYHYRGEISSTGFTIGIILAAIGVVLFLVSLRKKRD*
Ga0137394_107874691	3300012922	Vadose Zone Soil	LSFLIGLAGALKENYHHRTEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0137410_118694802	3300012944	Vadose Zone Soil	RMSHCVGVLAFLIGLAGHLKENYHYRGEISSTGFTIAIILAGIGVVLFLVSLRKKRE*
Ga0126375_114406871	3300012948	Tropical Forest Soil	GALKENYHYRGEISSVGFTIAIILAAIGVVMFLVSLRKKQG*
Ga0164302_108021861	3300012961	Soil	NYHYRGEIASTGFTIAIVLAGIGVVSFLVSLRKKRD*
Ga0134110_103416241	3300012975	Grasslands Soil	GVLSFLIGLAGHLKENYHHRSEISSTGFTIAIILAAIGVVLFLVSSRKKRG*
Ga0134079_103321561	3300014166	Grasslands Soil	LKENYHYRGDISSTGFTIAIILAAIGVVMFLVSLRKKRG*
Ga0157377_101255764	3300014745	Miscanthus Rhizosphere	AFLIGLAGHLKENYHYRGEISCTGFTIAIILGAIGVVLFLVSLRKKRR*
Ga0137420_11364621	3300015054	Vadose Zone Soil	GLAGHLKENYHYRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG*
Ga0132258_103435646	3300015371	Arabidopsis Rhizosphere	GLAGHFKSEYHHRGEISSTGFTIAIILAAIGVVIFLVSLRKKRG*
Ga0132258_139754101	3300015371	Arabidopsis Rhizosphere	LLGLAGHLKSEYHQRGEISSTGFTIAIILAAIGVVLFLVSLRKKRD*
Ga0132257_1001109176	3300015373	Arabidopsis Rhizosphere	FLMGVAGHFKSEYHHRGEISSTGFTIAIILAAIGVIMFLVSLRKKRG*
Ga0132257_1012660303	3300015373	Arabidopsis Rhizosphere	GLAGHLKENYHYRGEISSTGFTIAIILGAIGVVLFLVSLRKKQG*
Ga0132257_1030311931	3300015373	Arabidopsis Rhizosphere	HFKENYHHRGEISCTGFTIAIILAGIGVVLFLVSLRKKQN*
Ga0132255_1036833721	3300015374	Arabidopsis Rhizosphere	VAVLAFLIGIAGHFKSEYHHRGEISSTGFTIAIILGGIGVVMFLVSLRKKRG*
Ga0182041_117065132	3300016294	Soil	FCVGVLSFLIGLAGHFKSEYHHRGEITTTGFIVAIILAAIGVVMFLVSARKKQG
Ga0182032_112294162	3300016357	Soil	SEYHHRGEISSSGFTIAIILAAIGVVLFLVSLRKKRG
Ga0184621_101381091	3300018054	Groundwater Sediment	LKENYHHRAEISSTGFTIAIILAAIGVVLFLVSFRKKRG
Ga0184625_105101672	3300018081	Groundwater Sediment	VLSFLIGLAGYLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0173482_103484431	3300019361	Soil	YHYRGEISCTGFTIAIILAGIGVVLFLVSLRKKRG
Ga0193723_11354121	3300019879	Soil	LFCVGVLSFLIGLAGHLKENYHHRTEISSTGFTIAIILAAIGVVLFLVSLRKKRD
Ga0193712_11326692	3300019880	Soil	LKENYHHRAEISSAGFTIAIILAAIGVVLFLVSLRKKRG
Ga0193693_10447822	3300019996	Soil	VLSFLIGLAGHLKENYHYRGEISCTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0193711_10491572	3300019997	Soil	LSFLIGLAGHLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0210381_101489011	3300021078	Groundwater Sediment	ILFCVGVLSFLIGLAGHLKENYHHRAEISSTGFTVAIILAAIGVVLFLVSLRKKRG
Ga0126371_121358142	3300021560	Tropical Forest Soil	SFLIGLAGALKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0224452_10691551	3300022534	Groundwater Sediment	HLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0222622_103057883	3300022756	Groundwater Sediment	LFCVGVLSFLIGLAGHLKENYHHRAEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0207684_109211232	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GVLSFLIGLAGALKENYHLRGEISSTGFTIAIILAAIGVILFLVSLRKKRG
Ga0207693_107373061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	IGLAGHLKENYHYRGEISSTGFTIAIILAGIGVVLFLVSLRKKRG
Ga0207664_103499261	3300025929	Agricultural Soil	GHLKENYHHRGEISCTGFTIAIILGAIGVVLFMVSLRKKRG
Ga0207689_101550345	3300025942	Miscanthus Rhizosphere	LAFLIGLAGHLKANYHYRSEISSTGFTIAIILAGIGVVLFLISLRKKRG
Ga0207712_115031522	3300025961	Switchgrass Rhizosphere	FCVGVLAFLIGLAGHLKENYHYRGEISCTGFTIAIILAAIGVVLFLVSLRKKQG
Ga0207702_100423147	3300026078	Corn Rhizosphere	LAGHLKANYHYRSEISSTGFTIAIILAGIGVVLFLISLRKKRG
Ga0207702_117598341	3300026078	Corn Rhizosphere	FSVGVLAFLIGLAGHLKSNYHYRGEISCTGFTIAIILAGAGVVLFLVSLKKKRG
Ga0207675_1024448451	3300026118	Switchgrass Rhizosphere	NYHHRGEISSTGFTIAIILAAIGVVMFLVSLRKKQG
Ga0209057_10299646	3300026342	Soil	LKENYHGRTEISSTGFTIAILLAAIGGILFLVSLKKKSG
Ga0209159_11449571	3300026343	Soil	NYHHQAEISSVGFTIAIILAAIGVVLFLVSLRKRRG
Ga0257159_10924481	3300026494	Soil	AGHLKENYHYRGEISSTGFTIAIILAGIGVVLFLVSLRKKQD
Ga0257156_10096124	3300026498	Soil	IMFCVGVLSFLIGLAGHLKENYHYRGEISSTGFTIAIILAGIGVVLFLVSLRKKQD
Ga0209808_11672592	3300026523	Soil	LKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0209161_101585823	3300026548	Soil	IGLAGALKENYHYRGDISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0207450_1066561	3300026766	Soil	VGVLSFLIGLAGHLKENYHYRGEISSAGFTIAIILGAIGVVLFLVSLRKKRG
Ga0207981_10625812	3300027560	Soil	ENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0307291_12115881	3300028707	Soil	AFLIGLAGHFKENYHYRGEISCTGFTIAIILAGIGVVLFLVSLRKKQN
Ga0318541_105111171	3300031545	Soil	LIGLAGHFKSEYHHRGEISSMGFTIAIILAAIGVVLFLVSLRKKRG
Ga0306917_101937381	3300031719	Soil	YHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0307473_106193033	3300031820	Hardwood Forest Soil	LIGLAGHLKENYHYRGEISCMGFTIAIILAGIGVVLFLVSLRKKRD
Ga0318520_109112572	3300031897	Soil	GSLKENYHYRGEISSTGFTIAIILAAIGVVMFLVSLRKKRG
Ga0310912_103552481	3300031941	Soil	GLAGHFKSEYHHRGEISSTGFTIAIILAAIGVVLFLVSLRKKRG
Ga0310909_103291253	3300031947	Soil	FLIGLAGHFKSEYHHRGEITTTGFIVAIILAAIGVVMFLVSARKKQG
Ga0306924_119553341	3300032076	Soil	CIGVLSFLLGLAGALKENYHHRGEISSTGFTIAIVLAAIGVVMFLVSLRKKRG

Hidden Markov Model


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