Basic Information | |
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IMG/M Taxon OID | 3300026690 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072067 | Ga0207494 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-11 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 11627122 |
Sequencing Scaffolds | 18 |
Novel Protein Genes | 19 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
Not Available | 8 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001757 | Metagenome / Metatranscriptome | 641 | N |
F004468 | Metagenome / Metatranscriptome | 437 | Y |
F009364 | Metagenome / Metatranscriptome | 319 | Y |
F014159 | Metagenome / Metatranscriptome | 265 | Y |
F014512 | Metagenome | 262 | Y |
F030581 | Metagenome / Metatranscriptome | 185 | N |
F042201 | Metagenome | 158 | Y |
F056121 | Metagenome | 138 | Y |
F063305 | Metagenome / Metatranscriptome | 129 | N |
F064448 | Metagenome / Metatranscriptome | 128 | N |
F067256 | Metagenome / Metatranscriptome | 126 | Y |
F083220 | Metagenome | 113 | Y |
F083399 | Metagenome | 113 | N |
F084328 | Metagenome | 112 | N |
F085664 | Metagenome / Metatranscriptome | 111 | Y |
F089166 | Metagenome / Metatranscriptome | 109 | Y |
F090518 | Metagenome / Metatranscriptome | 108 | N |
F097293 | Metagenome / Metatranscriptome | 104 | Y |
F101572 | Metagenome / Metatranscriptome | 102 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0207494_100023 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1360 | Open in IMG/M |
Ga0207494_100184 | Not Available | 940 | Open in IMG/M |
Ga0207494_100312 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 852 | Open in IMG/M |
Ga0207494_100399 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 814 | Open in IMG/M |
Ga0207494_100443 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 795 | Open in IMG/M |
Ga0207494_100453 | Not Available | 791 | Open in IMG/M |
Ga0207494_100908 | Not Available | 673 | Open in IMG/M |
Ga0207494_101528 | Not Available | 599 | Open in IMG/M |
Ga0207494_101824 | All Organisms → cellular organisms → Bacteria | 573 | Open in IMG/M |
Ga0207494_101834 | Not Available | 572 | Open in IMG/M |
Ga0207494_101924 | All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | 565 | Open in IMG/M |
Ga0207494_102086 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 553 | Open in IMG/M |
Ga0207494_102247 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 542 | Open in IMG/M |
Ga0207494_102319 | Not Available | 538 | Open in IMG/M |
Ga0207494_102567 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 526 | Open in IMG/M |
Ga0207494_102580 | Not Available | 525 | Open in IMG/M |
Ga0207494_102640 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 521 | Open in IMG/M |
Ga0207494_102661 | Not Available | 520 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0207494_100023 | Ga0207494_1000231 | F083399 | MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAI |
Ga0207494_100184 | Ga0207494_1001842 | F056121 | QRLFVGTWSSPVAIILKAIGFRLATVEAIYRSRLSDAEVIRDDLFQTKAEFIALRRPTAERIVRFYCARKATNSSNLS |
Ga0207494_100312 | Ga0207494_1003122 | F030581 | MKTQRESRRRVSRFTKMVAKFLHIPDGAAVYVIWAAWIAVIIIIGIIVMLWR |
Ga0207494_100399 | Ga0207494_1003991 | F064448 | MEYSAVLGADEVLSDKPFTDAAYTMREVDVMRHMLLHERERALQWIDIDPGSHIIREYDDEGHRHLIVIPDTRRLLETENLTAVGFFG |
Ga0207494_100443 | Ga0207494_1004432 | F004468 | MTTRSRLRVFHFADYESTTISEKALCQLQDREAQERGARDLQKPAAQATPGVIMEWWSIDLCQDY |
Ga0207494_100453 | Ga0207494_1004532 | F042201 | MRIHLTDRHLIPSLLAFMREHVHVTADRVGPQEIEVSQLGSQHAAGRRLELDLLLQTWRASHASVETRILD |
Ga0207494_100908 | Ga0207494_1009081 | F089166 | ELGYWAMVDALEAERNAAKKSIAVEDPSFTCEPGAEEAEPSSALRVQRTVDEPAP |
Ga0207494_101528 | Ga0207494_1015282 | F014159 | MAEERRRNELEAAVLAFRDARPEERTAMNAALTRNEASILDGLAQEAAEAAVREEDPERVRFGLAALALEGGWPDWRDTTVVLTLLHVSARKLDLDADRIFEEEAGALAYRPVKERDYFSTAGAEIIRSFAGRPDRLKELDDRDHELDLREAQLTADVEIRTDKLEDREQALAE |
Ga0207494_101824 | Ga0207494_1018241 | F101572 | DGLTTALLDVLANGFAIVALVAKHLFGIAVDIVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAARTAERVTLGPPFPPAAQ |
Ga0207494_101834 | Ga0207494_1018341 | F063305 | VSLRPVRSTESASGRVKPERRFVTRETARLLPIVVPVALSGFAVLAFAIGQFAASNPEPEVLAGVFALLLAATFVEAHPVPIEGISSEGISLAAVFIVGTAVIYGWAPAVVMG |
Ga0207494_101924 | Ga0207494_1019241 | F083220 | YFINGNQLAKYNKATQEVTDLGPPQSVPLGYHALVVGADAWICSAAGSAGQNSYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPHWPTSAAGQTIGIHAMYGSAAGAWLDVGFVHHSWGVNGDSVFNLSTNTWSLMTNANMYSSGHSSIGAKFVNGCGSINGMYSGGACLRDPSNLMDATQYTFIM |
Ga0207494_102086 | Ga0207494_1020861 | F009364 | ASVQARRYSLDAVRRIALLSLAVFALVVLAGCGAASDQAQEQTLTPAQVRQTFKQATGRPLEPEAVSDPAWDQLGYGLDMPQSLVDRYGIFNVYVGKPGRSASLASFLKDKDTDKPLARSADGIYWELDSQSKTWVAYKRYSGNVVLVWFSGSKEQAADERFDRLDSILAGLPG |
Ga0207494_102247 | Ga0207494_1022472 | F090518 | MTKIELEQIDDGILNFNVSDEALESAGDNAVAANYTLGACT |
Ga0207494_102319 | Ga0207494_1023192 | F067256 | ARYRTVVREFEHTERVIEKKHRIEVLGALLEMHQQQHEPDDEYIKGLRQRLKGAQKQLGNMWPV |
Ga0207494_102567 | Ga0207494_1025671 | F097293 | SAGATGGGNAGTTTTEVVASANDVKALIPASLRKTCVKQSVADIGAVATAVCLPPAGATGFYPDRWQISIYPSGKAVRAAYAAEQRRQGLRSNSGKCTSLSWTGEGPWAHGPGRPGGRRLCYFDGTNAVIVWTHERLGQPNHRDILAIAREGGTDHVRLIGWWTYAHHLIGKAS |
Ga0207494_102580 | Ga0207494_1025801 | F014512 | MPTAGTPARLAFVFAVAALSSHLPISLGAQDPPCQMKVVSCNYAHLYSGEFSWTNTLNGPSSQFHEQVTVSVKNGVADCLGTVRETSNGQTTSGKVSGPGLFAVEFERDSADKLVYRITAACPTAAGMGSPVQRAELGHHDQETYQQRATAIAQKVLQGGSNYPAPETDE |
Ga0207494_102613 | Ga0207494_1026131 | F085664 | LTPEQIAANKNLAYPDQVHFNVAAFAMAQPNGNVGNFGNTPVGILRHPTWHEWDITLSRRFPVTFMGRKNSGVKLQFQTFNVFNEVQFTNMNASYTFTGANNSVNNSANTGKYTQSGDGLAAGTIAPRIMSLTLRFDW |
Ga0207494_102640 | Ga0207494_1026401 | F001757 | MRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV |
Ga0207494_102661 | Ga0207494_1026612 | F084328 | MRPKNAAPSVSDACPDWEAPAFTKLPIASRTGSGANVANDAPRAIEPEAPGQPLSKLG |
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