3300026658: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026658
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072123 | Ga0207573
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6275265
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046034	Metagenome	152	Y
F049206	Metagenome / Metatranscriptome	147	N
F057709	Metagenome	136	Y
F061030	Metagenome / Metatranscriptome	132	Y
F061958	Metagenome / Metatranscriptome	131	N
F068052	Metagenome	125	Y
F082749	Metagenome / Metatranscriptome	113	Y
F083399	Metagenome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207573_100140	Not Available	853
Ga0207573_100340	Not Available	693
Ga0207573_100445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647
Ga0207573_100740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	566
Ga0207573_100826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	554
Ga0207573_100851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	549
Ga0207573_100908	Not Available	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207573_100049	Ga0207573_1000491	F082749	RLINHAMTLDAGLSLEGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS
Ga0207573_100140	Ga0207573_1001402	F057709	MSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAV
Ga0207573_100340	Ga0207573_1003401	F083399	MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYGFDLRNVPVLSQHGGAIIVFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAVGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLAAVVF
Ga0207573_100445	Ga0207573_1004452	F061030	FDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207573_100740	Ga0207573_1007401	F061958	MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDD
Ga0207573_100826	Ga0207573_1008262	F068052	REWPKLTPAAVTDFERVLASQESHVVSVLPMDRDSIFFARDLVDAFKRIGWKAKRDTSVNDVPDGLTVWPEDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI
Ga0207573_100851	Ga0207573_1008511	F049206	VRTTNEIREELDQAIARRAELWNRLAQGSDAETSAELAGLSKTIDELWGEYRTAEARKRFGSPELIHARARTEERLERDSR
Ga0207573_100908	Ga0207573_1009081	F046034	LCEQALIPFGIEDMSVLVVSVGRNLSVPAYASVAHAA