Sample 3300026122

Overview

Basic Information
IMG/M Taxon OID	3300026122 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125947 \| Ga0209926
Sample Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	178004725
Sequencing Scaffolds	29
Novel Protein Genes	33
Associated Families	33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.496	Long. (^o)	-122.1329	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000233	Metagenome / Metatranscriptome	1512	Y
F000388	Metagenome / Metatranscriptome	1201	Y
F000436	Metagenome / Metatranscriptome	1146	Y
F000478	Metagenome / Metatranscriptome	1096	Y
F001200	Metagenome / Metatranscriptome	749	Y
F003606	Metagenome / Metatranscriptome	477	Y
F004533	Metagenome / Metatranscriptome	434	Y
F007962	Metagenome / Metatranscriptome	341	Y
F008007	Metagenome / Metatranscriptome	341	Y
F009686	Metagenome / Metatranscriptome	314	Y
F012524	Metagenome / Metatranscriptome	280	Y
F027273	Metagenome / Metatranscriptome	195	Y
F028238	Metagenome / Metatranscriptome	192	Y
F032595	Metagenome / Metatranscriptome	179	Y
F036417	Metagenome / Metatranscriptome	170	Y
F036632	Metagenome / Metatranscriptome	169	Y
F038919	Metagenome / Metatranscriptome	165	Y
F044015	Metagenome	155	Y
F045210	Metagenome / Metatranscriptome	153	Y
F045892	Metagenome / Metatranscriptome	152	Y
F059231	Metagenome / Metatranscriptome	134	Y
F060986	Metagenome / Metatranscriptome	132	Y
F061743	Metagenome / Metatranscriptome	131	Y
F062602	Metagenome / Metatranscriptome	130	Y
F067487	Metagenome / Metatranscriptome	125	Y
F071467	Metagenome / Metatranscriptome	122	Y
F072876	Metagenome	121	Y
F077318	Metagenome	117	Y
F077325	Metagenome	117	Y
F082716	Metagenome	113	Y
F084079	Metagenome / Metatranscriptome	112	Y
F088279	Metagenome	109	Y
F097820	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F000233

Metagenome / Metatranscriptome

1512

F000388

Metagenome / Metatranscriptome

1201

F000436

Metagenome / Metatranscriptome

1146

F000478

Metagenome / Metatranscriptome

1096

F001200

Metagenome / Metatranscriptome

749

F003606

Metagenome / Metatranscriptome

477

F004533

Metagenome / Metatranscriptome

434

F007962

Metagenome / Metatranscriptome

341

F008007

Metagenome / Metatranscriptome

341

F009686

Metagenome / Metatranscriptome

314

F012524

Metagenome / Metatranscriptome

280

F027273

Metagenome / Metatranscriptome

195

F028238

Metagenome / Metatranscriptome

192

F032595

Metagenome / Metatranscriptome

179

F036417

Metagenome / Metatranscriptome

170

F036632

Metagenome / Metatranscriptome

169

F038919

Metagenome / Metatranscriptome

165

F044015

Metagenome

155

F045210

Metagenome / Metatranscriptome

153

F045892

Metagenome / Metatranscriptome

152

F059231

Metagenome / Metatranscriptome

134

F060986

Metagenome / Metatranscriptome

132

F061743

Metagenome / Metatranscriptome

131

F062602

Metagenome / Metatranscriptome

130

F067487

Metagenome / Metatranscriptome

125

F071467

Metagenome / Metatranscriptome

122

F072876

Metagenome

121

F077318

Metagenome

117

F077325

Metagenome

117

F082716

Metagenome

113

F084079

Metagenome / Metatranscriptome

112

F088279

Metagenome

109

F097820

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209926_1005238	Not Available	2235	Open in IMG/M
Ga0209926_1005380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2209	Open in IMG/M
Ga0209926_1007373	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1917	Open in IMG/M
Ga0209926_1013604	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
Ga0209926_1018901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1213	Open in IMG/M
Ga0209926_1024518	All Organisms → Viruses → Predicted Viral	1061	Open in IMG/M
Ga0209926_1025256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1044	Open in IMG/M
Ga0209926_1027968	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
Ga0209926_1030481	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
Ga0209926_1030909	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
Ga0209926_1033374	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
Ga0209926_1039918	Not Available	816	Open in IMG/M
Ga0209926_1045925	Not Available	757	Open in IMG/M
Ga0209926_1048501	Not Available	735	Open in IMG/M
Ga0209926_1051007	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
Ga0209926_1052083	All Organisms → cellular organisms → Archaea	707	Open in IMG/M
Ga0209926_1059426	All Organisms → cellular organisms → Archaea	659	Open in IMG/M
Ga0209926_1063381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
Ga0209926_1064580	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
Ga0209926_1065039	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
Ga0209926_1066417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
Ga0209926_1070225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
Ga0209926_1072253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	593	Open in IMG/M
Ga0209926_1072684	Not Available	591	Open in IMG/M
Ga0209926_1072746	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
Ga0209926_1073670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	587	Open in IMG/M
Ga0209926_1077028	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	573	Open in IMG/M
Ga0209926_1080679	Not Available	558	Open in IMG/M
Ga0209926_1099336	Not Available	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209926_1005238

Not Available

2235

Open in IMG/M

Ga0209926_1005380

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

2209

Open in IMG/M

Ga0209926_1007373

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

1917

Open in IMG/M

Ga0209926_1013604

All Organisms → cellular organisms → Bacteria

1436

Open in IMG/M

Ga0209926_1018901

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

1213

Open in IMG/M

Ga0209926_1024518

All Organisms → Viruses → Predicted Viral

1061

Open in IMG/M

Ga0209926_1025256

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

1044

Open in IMG/M

Ga0209926_1027968

All Organisms → cellular organisms → Bacteria

989

Open in IMG/M

Ga0209926_1030481

All Organisms → cellular organisms → Bacteria

945

Open in IMG/M

Ga0209926_1030909

All Organisms → cellular organisms → Bacteria

938

Open in IMG/M

Ga0209926_1033374

All Organisms → cellular organisms → Bacteria

899

Open in IMG/M

Ga0209926_1039918

Not Available

816

Open in IMG/M

Ga0209926_1045925

Not Available

757

Open in IMG/M

Ga0209926_1048501

Not Available

735

Open in IMG/M

Ga0209926_1051007

All Organisms → cellular organisms → Bacteria → Acidobacteria

715

Open in IMG/M

Ga0209926_1052083

All Organisms → cellular organisms → Archaea

707

Open in IMG/M

Ga0209926_1059426

All Organisms → cellular organisms → Archaea

659

Open in IMG/M

Ga0209926_1063381

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

636

Open in IMG/M

Ga0209926_1064580

All Organisms → cellular organisms → Bacteria

630

Open in IMG/M

Ga0209926_1065039

All Organisms → cellular organisms → Bacteria

627

Open in IMG/M

Ga0209926_1066417

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

620

Open in IMG/M

Ga0209926_1070225

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

602

Open in IMG/M

Ga0209926_1072253

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii

593

Open in IMG/M

Ga0209926_1072684

Not Available

591

Open in IMG/M

Ga0209926_1072746

All Organisms → cellular organisms → Bacteria

591

Open in IMG/M

Ga0209926_1073670

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

587

Open in IMG/M

Ga0209926_1077028

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

573

Open in IMG/M

Ga0209926_1080679

Not Available

558

Open in IMG/M

Ga0209926_1099336

Not Available

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209926_1002063	Ga0209926_10020639	F084079	MSHETVLIGYDGIPYEKGDRVEVHPSTDLWIRGARYARVIGTSITPDDRVRVRFDVLPQRIFGGSADTFRKIR
Ga0209926_1003912	Ga0209926_10039121	F000233	MPSTTRKRPSSPAAPARSKPKVRKTKFQADLAPSEDQMVRHLKAELEMTSNSDFLTDALALFRWAVIERKRGHRILSESATGERKVLLFPRLERVAPEVNLPQTEIAWTAQEIESLAQLVTGKPAEPTEALVRAMRH
Ga0209926_1005238	Ga0209926_10052384	F009686	MFEKSFQRPSNFFKLPSWRQWEIDKKLGILDWIGEELSKEDIERFHAHYDK
Ga0209926_1005380	Ga0209926_10053803	F032595	MARYFSAHTTACLTKQALKELMQRLLAGTDVKVLRAVSSQVGGRMLTETEAPDRQTLEKFFEEHYVNCEWIMRLDLDARPEGIAEY
Ga0209926_1007373	Ga0209926_10073733	F007962	MTTQATIRKIKRSFTLTPESLAFVHETRKRRRIGSDSEALDLLLKDLMLEARRREIDAAFTAYYDAAPDEDLREQREWAEGTSGNMFAGIRE
Ga0209926_1013604	Ga0209926_10136042	F000436	MTSIPLTLDNEPLGIILRTGQQLLRPAKIWAYCWCADDAEDGMHTHERIPVDPR
Ga0209926_1018901	Ga0209926_10189011	F012524	AAVPGSDKIARLLREIDALIADDEAADREITGGWKTFEDICAASSVYTWDAYSVDLATDAASYQALSQRQQEAIKRVFGTIYRAESIVDDWMDRIVAAMPREPEYDSMRAALMTQEHDERMHRGSLVRIATEVLGIPPDDVERVAKKYDNFVAEVLFARFEKEMRRLLRPGRPLEDVYTAIFIYGVLSEDVVANGDVVIRRAKGRALYDAYDLPGMKVGQTKVRRDEGRHVRIAVLATRRYLAEFPGAAERLLGICTDYLDLADRMVRQAKASRGLIDAHLAESYGPDVDSLYYYVMNMKRLAVRLDELGLREGVLEVKRRVDATIAELSDEHGEPIMEKPGRLLRLVGPRMLRLGAMRLAG
Ga0209926_1023495	Ga0209926_10234952	F045210	MSGDPSAAAEPPARAVVTEVTPGTGALLVGLDVTGTPAAHQAGGAAPRWQVLTVRDGRITDIRGFADRAPAAAHAGLAG
Ga0209926_1024518	Ga0209926_10245182	F097820	LAWLQGLTAVDLGLSFEAGKDFAATQEMSEEFSQNVSYQGAFGTDGPVLRRVQAADEGTVTFNAILLKDGVASKMNDETLLKSMRDFDVQTKRGNLIQTYRGCNWSRLTIRSTLEQVTLDGTLSIPGYAAP
Ga0209926_1025256	Ga0209926_10252562	F072876	MEMSKQGYSEVTLMPVKKFYDYLKWKTKLEEEKQKMILEHTGK
Ga0209926_1027968	Ga0209926_10279681	F038919	SEPPNRYRWRIQDVGAPQFQLQVTQLDALLERTARAGFRFLSVGGEPIDRPFGRFVFAIDPDGIPVEFVEPAANQPAQ
Ga0209926_1030481	Ga0209926_10304813	F059231	VKVVPLTDGQAAAIAGWRYEFPYEWYDTSADPRRVELFANPDRRTHLRAVVDEDDEIVG
Ga0209926_1030909	Ga0209926_10309091	F036417	MIYPTRRVPLRYRIPTVLVRLSTDDGDVSFRARWQKRPLDLQRRILFLMRQGKPIWFEDEWGHDLCFRPDRVSAAVVDGRASTPV
Ga0209926_1033374	Ga0209926_10333742	F008007	MVLELKPEQQKVLDRAARSGMSPEEVLDQAFAVIHEQHRNEEWMLEERDAVAAQIAEGFAQAERGELVGPQEAARILHDRRAKRRIA
Ga0209926_1039918	Ga0209926_10399181	F077318	MIEAIKALQSGDFYGAGEYTEIAKGKYEYTTSWRDFKYKIKRTWLSRKRL
Ga0209926_1044429	Ga0209926_10444292	F060986	LPGYTLRELGWNDELAAQLEPGLSPGRVAAAHRGA
Ga0209926_1045925	Ga0209926_10459251	F044015	VITIEIDLAGRDFLQKILDSHLSELRNEIAATKRDTSPLHAEEDLIKQLKLKLSKPA
Ga0209926_1048501	Ga0209926_10485011	F088279	RFCMKDGSMTLTGWPAVRMFLMLAVTPVLTALVMSLPIAWLINHVFAISAIHAIFGVEHLRYWQAVGLFALWYAARTKIKVHGPSK
Ga0209926_1051007	Ga0209926_10510072	F027273	MMIIGCAFHPGFQQIAYVEQETGEYGERRLSHREEA
Ga0209926_1052083	Ga0209926_10520831	F077325	LSKKGNWTEKDEATIKAIIVNMINQKQMFRNLGEKGELPSSFNVQNSREFVLGIFTGIVINLFANYWVGEHEAGLLPEDLDFLYHKIALSNELIFVGLFE
Ga0209926_1059426	Ga0209926_10594261	F082716	MPVTFIIAPVVLISLVYIVFITSNDMIEEKEFIVSLSCPELREYTQSQIIDSKLYFGHEVFLSYAEERYDTSC
Ga0209926_1063381	Ga0209926_10633811	F067487	MRATYEIRPPAWAETLAVLQSVSLPDRPTRVRARVVEADGNRVTLDFPALDGETSAEQLLAVCVAGEWADRSDFESCRLVEVEWPEELPGPRFPAKSGVAVGAIVKPALGLTA
Ga0209926_1064580	Ga0209926_10645801	F000478	MGAVTDWGPRMRKDVREFIRRLEAAGLTVEPTPGHYRVLRDGKPLRKANGMPFMLPFSPDTTRWRRAATVEL
Ga0209926_1065039	Ga0209926_10650391	F062602	VFVSFMFVMDPSPRRAELAAVPLFTVHLAFAIATFAGIAWQLTSRVSARLRPLHRHTGPYVVLVWCLALVTGIYNYVFLYVWTGR
Ga0209926_1066417	Ga0209926_10664172	F003606	NPRRAGHPRARLCVPVRPRSANEWRDFWRDGGEQTLHAQLEELAPYGVRIATLLGSNAPPRALVAEIGRIREHELRGAPDPDRDALLAARIHSWFESATVPR
Ga0209926_1070225	Ga0209926_10702252	F045892	MALARVVSFEGIGSDRMAALAAEMQQDEPPEGLEGSELIVLHDPDGKQALAIVFFADEDAYQRGDAVLDAMPAEDVPGRRTSVTKYDVAVRMTS
Ga0209926_1072253	Ga0209926_10722533	F071467	MTQAPPAIFKIPTKSPQPARRAAPPARRAKAPRPVTGRVIANGTGRAATRGGGEVIELEYGITVYPARLEPGRWRAVWYENGERQQCEAVTGEKLAAK
Ga0209926_1072684	Ga0209926_10726842	F001200	MSELPAGDPHDVIHHHGEVVAVVVPVDEYRQLRQAAEEQRVNEEFDKARAGYLARQEAGAIRYVSHEEAGRQLGLPTR
Ga0209926_1072746	Ga0209926_10727461	F061743	VKLTALAAHTPHAVRAALAARGWEGQPAWFAAVGLRPLVV
Ga0209926_1073670	Ga0209926_10736702	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDVNEKLVNKLKDEKSFNRL
Ga0209926_1077028	Ga0209926_10770281	F036632	LDRGGAVALPADGRHALHAQWLVWHRDAAARHKAGEAGKRLVGEGRGAAERTTMLVEQLMRDR
Ga0209926_1080679	Ga0209926_10806792	F028238	MMENPSMTLLVRVSGRDGEHALPVPPEQTPPEELTRFLDRHGPYSQIWIRLGSGEYVRYEHIVSIRIQE
Ga0209926_1099336	Ga0209926_10993362	F004533	TRFDGCAPQGAPELGYEQTLEALLSLVGRPVLVLFSGADGSPFISGIISGRLDRGALDVRLQEVLLRADDTAVETLFFHVGSRQDGFVLRPDEFESGFWRDDDQLVLRLGRCAVTVLVQGELARAIER

Scaffold ID

Protein ID

Family

Sequence

Ga0209926_1002063

Ga0209926_10020639

F084079

MSHETVLIGYDGIPYEKGDRVEVHPSTDLWIRGARYARVIGTSITPDDRVRVRFDVLPQRIFGGSADTFRKIR

Ga0209926_1003912

Ga0209926_10039121

F000233

MPSTTRKRPSSPAAPARSKPKVRKTKFQADLAPSEDQMVRHLKAELEMTSNSDFLTDALALFRWAVIERKRGHRILSESATGERKVLLFPRLERVAPEVNLPQTEIAWTAQEIESLAQLVTGKPAEPTEALVRAMRH

Ga0209926_1005238

Ga0209926_10052384

F009686

MFEKSFQRPSNFFKLPSWRQWEIDKKLGILDWIGEELSKEDIERFHAHYDK

Ga0209926_1005380

Ga0209926_10053803

F032595

MARYFSAHTTACLTKQALKELMQRLLAGTDVKVLRAVSSQVGGRMLTETEAPDRQTLEKFFEEHYVNCEWIMRLDLDARPEGIAEY

Ga0209926_1007373

Ga0209926_10073733

F007962

MTTQATIRKIKRSFTLTPESLAFVHETRKRRRIGSDSEALDLLLKDLMLEARRREIDAAFTAYYDAAPDEDLREQREWAEGTSGNMFAGIRE

Ga0209926_1013604

Ga0209926_10136042

F000436

MTSIPLTLDNEPLGIILRTGQQLLRPAKIWAYCWCADDAEDGMHTHERIPVDPR

Ga0209926_1018901

Ga0209926_10189011

F012524

AAVPGSDKIARLLREIDALIADDEAADREITGGWKTFEDICAASSVYTWDAYSVDLATDAASYQALSQRQQEAIKRVFGTIYRAESIVDDWMDRIVAAMPREPEYDSMRAALMTQEHDERMHRGSLVRIATEVLGIPPDDVERVAKKYDNFVAEVLFARFEKEMRRLLRPGRPLEDVYTAIFIYGVLSEDVVANGDVVIRRAKGRALYDAYDLPGMKVGQTKVRRDEGRHVRIAVLATRRYLAEFPGAAERLLGICTDYLDLADRMVRQAKASRGLIDAHLAESYGPDVDSLYYYVMNMKRLAVRLDELGLREGVLEVKRRVDATIAELSDEHGEPIMEKPGRLLRLVGPRMLRLGAMRLAG

Ga0209926_1023495

Ga0209926_10234952

F045210

MSGDPSAAAEPPARAVVTEVTPGTGALLVGLDVTGTPAAHQAGGAAPRWQVLTVRDGRITDIRGFADRAPAAAHAGLAG

Ga0209926_1024518

Ga0209926_10245182

F097820

LAWLQGLTAVDLGLSFEAGKDFAATQEMSEEFSQNVSYQGAFGTDGPVLRRVQAADEGTVTFNAILLKDGVASKMNDETLLKSMRDFDVQTKRGNLIQTYRGCNWSRLTIRSTLEQVTLDGTLSIPGYAAP

Ga0209926_1025256

Ga0209926_10252562

F072876

MEMSKQGYSEVTLMPVKKFYDYLKWKTKLEEEKQKMILEHTGK

Ga0209926_1027968

Ga0209926_10279681

F038919

SEPPNRYRWRIQDVGAPQFQLQVTQLDALLERTARAGFRFLSVGGEPIDRPFGRFVFAIDPDGIPVEFVEPAANQPAQ

Ga0209926_1030481

Ga0209926_10304813

F059231

VKVVPLTDGQAAAIAGWRYEFPYEWYDTSADPRRVELFANPDRRTHLRAVVDEDDEIVG

Ga0209926_1030909

Ga0209926_10309091

F036417

MIYPTRRVPLRYRIPTVLVRLSTDDGDVSFRARWQKRPLDLQRRILFLMRQGKPIWFEDEWGHDLCFRPDRVSAAVVDGRASTPV

Ga0209926_1033374

Ga0209926_10333742

F008007

MVLELKPEQQKVLDRAARSGMSPEEVLDQAFAVIHEQHRNEEWMLEERDAVAAQIAEGFAQAERGELVGPQEAARILHDRRAKRRIA

Ga0209926_1039918

Ga0209926_10399181

F077318

MIEAIKALQSGDFYGAGEYTEIAKGKYEYTTSWRDFKYKIKRTWLSRKRL

Ga0209926_1044429

Ga0209926_10444292

F060986

LPGYTLRELGWNDELAAQLEPGLSPGRVAAAHRGA

Ga0209926_1045925

Ga0209926_10459251

F044015

VITIEIDLAGRDFLQKILDSHLSELRNEIAATKRDTSPLHAEEDLIKQLKLKLSKPA

Ga0209926_1048501

Ga0209926_10485011

F088279

RFCMKDGSMTLTGWPAVRMFLMLAVTPVLTALVMSLPIAWLINHVFAISAIHAIFGVEHLRYWQAVGLFALWYAARTKIKVHGPSK

Ga0209926_1051007

Ga0209926_10510072

F027273

MMIIGCAFHPGFQQIAYVEQETGEYGERRLSHREEA

Ga0209926_1052083

Ga0209926_10520831

F077325

LSKKGNWTEKDEATIKAIIVNMINQKQMFRNLGEKGELPSSFNVQNSREFVLGIFTGIVINLFANYWVGEHEAGLLPEDLDFLYHKIALSNELIFVGLFE

Ga0209926_1059426

Ga0209926_10594261

F082716

MPVTFIIAPVVLISLVYIVFITSNDMIEEKEFIVSLSCPELREYTQSQIIDSKLYFGHEVFLSYAEERYDTSC

Ga0209926_1063381

Ga0209926_10633811

F067487

MRATYEIRPPAWAETLAVLQSVSLPDRPTRVRARVVEADGNRVTLDFPALDGETSAEQLLAVCVAGEWADRSDFESCRLVEVEWPEELPGPRFPAKSGVAVGAIVKPALGLTA

Ga0209926_1064580

Ga0209926_10645801

F000478

MGAVTDWGPRMRKDVREFIRRLEAAGLTVEPTPGHYRVLRDGKPLRKANGMPFMLPFSPDTTRWRRAATVEL

Ga0209926_1065039

Ga0209926_10650391

F062602

VFVSFMFVMDPSPRRAELAAVPLFTVHLAFAIATFAGIAWQLTSRVSARLRPLHRHTGPYVVLVWCLALVTGIYNYVFLYVWTGR

Ga0209926_1066417

Ga0209926_10664172

F003606

NPRRAGHPRARLCVPVRPRSANEWRDFWRDGGEQTLHAQLEELAPYGVRIATLLGSNAPPRALVAEIGRIREHELRGAPDPDRDALLAARIHSWFESATVPR

Ga0209926_1070225

Ga0209926_10702252

F045892

MALARVVSFEGIGSDRMAALAAEMQQDEPPEGLEGSELIVLHDPDGKQALAIVFFADEDAYQRGDAVLDAMPAEDVPGRRTSVTKYDVAVRMTS

Ga0209926_1072253

Ga0209926_10722533

F071467

MTQAPPAIFKIPTKSPQPARRAAPPARRAKAPRPVTGRVIANGTGRAATRGGGEVIELEYGITVYPARLEPGRWRAVWYENGERQQCEAVTGEKLAAK

Ga0209926_1072684

Ga0209926_10726842

F001200

MSELPAGDPHDVIHHHGEVVAVVVPVDEYRQLRQAAEEQRVNEEFDKARAGYLARQEAGAIRYVSHEEAGRQLGLPTR

Ga0209926_1072746

Ga0209926_10727461

F061743

VKLTALAAHTPHAVRAALAARGWEGQPAWFAAVGLRPLVV

Ga0209926_1073670

Ga0209926_10736702

F000388

MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDVNEKLVNKLKDEKSFNRL

Ga0209926_1077028

Ga0209926_10770281

F036632

LDRGGAVALPADGRHALHAQWLVWHRDAAARHKAGEAGKRLVGEGRGAAERTTMLVEQLMRDR

Ga0209926_1080679

Ga0209926_10806792

F028238

MMENPSMTLLVRVSGRDGEHALPVPPEQTPPEELTRFLDRHGPYSQIWIRLGSGEYVRYEHIVSIRIQE

Ga0209926_1099336

Ga0209926_10993362

F004533

TRFDGCAPQGAPELGYEQTLEALLSLVGRPVLVLFSGADGSPFISGIISGRLDRGALDVRLQEVLLRADDTAVETLFFHVGSRQDGFVLRPDEFESGFWRDDDQLVLRLGRCAVTVLVQGELARAIER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026122: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences