Metagenome Family F088279

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088279
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	79 residues
Representative Sequence	MQDESWTLVGWPAVPLFLMLAVTPVLTALVISLPVAWLVNHIFAATAIHAIFGVEHLGYWRVVGLFAILFATQFKIKFHGASK
Number of Associated Samples	82
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.75 %
% of genes near scaffold ends (potentially truncated)	29.36 %
% of genes from short scaffolds (< 2000 bps)	60.55 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.294 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.028 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.76% β-sheet: 0.00% Coil/Unstructured: 43.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00589	Phage_integrase	7.34
PF00149	Metallophos	5.50
PF13560	HTH_31	4.59
PF02586	SRAP	2.75
PF02899	Phage_int_SAM_1	2.75
PF01381	HTH_3	1.83
PF12850	Metallophos_2	1.83
PF16401	DUF5009	0.92
PF05685	Uma2	0.92
PF01915	Glyco_hydro_3_C	0.92
PF14310	Fn3-like	0.92
PF00420	Oxidored_q2	0.92
PF13245	AAA_19	0.92
PF12704	MacB_PCD	0.92
PF00210	Ferritin	0.92
PF07510	DUF1524	0.92
PF13517	FG-GAP_3	0.92
PF05199	GMC_oxred_C	0.92
PF09722	Xre_MbcA_ParS_C	0.92
PF09234	DUF1963	0.92
PF13091	PLDc_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	2.75
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	2.75
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	2.75
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.92
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.92
COG3878	Uncharacterized conserved protein YwqG, DUF1963 family	Function unknown [S]	0.92
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
All Organisms	root	All Organisms	47.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
cellular organisms	root	All Organisms → cellular organisms	46.79 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.95 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.28 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24.77 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	24.77 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.83 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	24.77 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.83 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.92 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	7.34 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.83 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.83 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.83 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.92 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.92 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.29 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	6.42 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1.83 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1.83 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1.83 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.92 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	0.92 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.92 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100581704	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	516	Open in IMG/M
3300001213\|JGIcombinedJ13530_104744279	Not Available	544	Open in IMG/M
3300005327\|Ga0070658_10012850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6720	Open in IMG/M
3300005366\|Ga0070659_101262636	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	654	Open in IMG/M
3300005435\|Ga0070714_100023708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	5046	Open in IMG/M
3300005530\|Ga0070679_100620063	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	1025	Open in IMG/M
3300005534\|Ga0070735_10046190	All Organisms → cellular organisms → Bacteria	2911	Open in IMG/M
3300005563\|Ga0068855_100849451	Not Available	967	Open in IMG/M
3300005563\|Ga0068855_101001901	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300007764\|Ga0102950_1009267	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2795	Open in IMG/M
3300009174\|Ga0105241_10000178	All Organisms → cellular organisms → Bacteria	47115	Open in IMG/M
3300009174\|Ga0105241_10009189	All Organisms → cellular organisms → Bacteria → Acidobacteria	7275	Open in IMG/M
3300009545\|Ga0105237_10406562	Not Available	1366	Open in IMG/M
3300009638\|Ga0116113_1030972	Not Available	1204	Open in IMG/M
3300010339\|Ga0074046_10701979	Not Available	594	Open in IMG/M
3300010396\|Ga0134126_10809126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1059	Open in IMG/M
3300010399\|Ga0134127_12324731	Not Available	615	Open in IMG/M
3300013296\|Ga0157374_10146840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	2291	Open in IMG/M
3300013297\|Ga0157378_10432465	All Organisms → cellular organisms → Bacteria → Acidobacteria	1303	Open in IMG/M
3300014167\|Ga0181528_10046552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2412	Open in IMG/M
3300014167\|Ga0181528_10433371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	718	Open in IMG/M
3300014200\|Ga0181526_10130007	Not Available	1612	Open in IMG/M
3300014201\|Ga0181537_11110272	Not Available	534	Open in IMG/M
3300014491\|Ga0182014_10104990	Not Available	1690	Open in IMG/M
3300014491\|Ga0182014_10304540	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	817	Open in IMG/M
3300014492\|Ga0182013_10523826	Not Available	614	Open in IMG/M
3300014493\|Ga0182016_10426642	Not Available	780	Open in IMG/M
3300014499\|Ga0182012_10002159	All Organisms → cellular organisms → Bacteria	21423	Open in IMG/M
3300014499\|Ga0182012_10235317	All Organisms → Viruses → Predicted Viral	1265	Open in IMG/M
3300014499\|Ga0182012_10544303	Not Available	750	Open in IMG/M
3300014838\|Ga0182030_10562885	Not Available	1113	Open in IMG/M
3300017948\|Ga0187847_10487541	Not Available	682	Open in IMG/M
3300017948\|Ga0187847_10910667	Not Available	500	Open in IMG/M
3300017988\|Ga0181520_10159217	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1826	Open in IMG/M
3300017988\|Ga0181520_10941094	Not Available	574	Open in IMG/M
3300018002\|Ga0187868_1056387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1657	Open in IMG/M
3300018012\|Ga0187810_10292575	Not Available	673	Open in IMG/M
3300018034\|Ga0187863_10053789	Not Available	2298	Open in IMG/M
3300018034\|Ga0187863_10615935	Not Available	611	Open in IMG/M
3300018044\|Ga0187890_10002402	All Organisms → cellular organisms → Bacteria	13095	Open in IMG/M
3300018044\|Ga0187890_10226903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1055	Open in IMG/M
3300018046\|Ga0187851_10838631	Not Available	517	Open in IMG/M
3300018047\|Ga0187859_10931713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	500	Open in IMG/M
3300021420\|Ga0210394_11048351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	705	Open in IMG/M
3300023068\|Ga0224554_1005579	All Organisms → cellular organisms → Bacteria	5061	Open in IMG/M
3300025909\|Ga0207705_10013004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6007	Open in IMG/M
3300025911\|Ga0207654_10000059	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	75594	Open in IMG/M
3300025911\|Ga0207654_10015240	All Organisms → cellular organisms → Bacteria → Acidobacteria	3985	Open in IMG/M
3300025949\|Ga0207667_10152041	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300026078\|Ga0207702_11576912	Not Available	650	Open in IMG/M
3300026122\|Ga0209926_1048501	Not Available	735	Open in IMG/M
3300026456\|Ga0255351_1000483	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17696	Open in IMG/M
3300027376\|Ga0209004_1000065	All Organisms → cellular organisms → Bacteria	29418	Open in IMG/M
3300027824\|Ga0209040_10544549	Not Available	506	Open in IMG/M
3300027986\|Ga0209168_10028533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	3097	Open in IMG/M
3300028560\|Ga0302144_10036841	Not Available	1572	Open in IMG/M
3300028560\|Ga0302144_10071176	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1113	Open in IMG/M
3300028765\|Ga0302198_10332571	Not Available	707	Open in IMG/M
3300028766\|Ga0302269_1143258	Not Available	687	Open in IMG/M
3300028788\|Ga0302189_10357600	Not Available	579	Open in IMG/M
3300028859\|Ga0302265_1122688	Not Available	822	Open in IMG/M
3300028866\|Ga0302278_10313437	Not Available	724	Open in IMG/M
3300028866\|Ga0302278_10364775	Not Available	650	Open in IMG/M
3300028873\|Ga0302197_10391146	Not Available	616	Open in IMG/M
3300028909\|Ga0302200_10035883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3008	Open in IMG/M
3300029911\|Ga0311361_11131437	Not Available	636	Open in IMG/M
3300029915\|Ga0311358_10014226	All Organisms → cellular organisms → Bacteria	10995	Open in IMG/M
3300029917\|Ga0311326_10062262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	2130	Open in IMG/M
3300029918\|Ga0302143_1045063	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1013	Open in IMG/M
3300029922\|Ga0311363_10174041	All Organisms → cellular organisms → Bacteria → Acidobacteria	2690	Open in IMG/M
3300029939\|Ga0311328_10746853	Not Available	658	Open in IMG/M
3300029954\|Ga0311331_11693025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	508	Open in IMG/M
3300029955\|Ga0311342_10291093	Not Available	1491	Open in IMG/M
3300030011\|Ga0302270_10489054	Not Available	644	Open in IMG/M
3300030048\|Ga0302273_1041660	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1376	Open in IMG/M
3300030339\|Ga0311360_10136343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2031	Open in IMG/M
3300030507\|Ga0302192_10206576	Not Available	846	Open in IMG/M
3300031259\|Ga0302187_10238532	Not Available	924	Open in IMG/M
3300031259\|Ga0302187_10344725	Not Available	719	Open in IMG/M
3300031259\|Ga0302187_10497976	Not Available	559	Open in IMG/M
3300031670\|Ga0307374_10272311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1104	Open in IMG/M
3300032782\|Ga0335082_10051898	All Organisms → cellular organisms → Bacteria	4237	Open in IMG/M
3300032805\|Ga0335078_10295754	Not Available	2180	Open in IMG/M
3300032829\|Ga0335070_11496069	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	615	Open in IMG/M
3300032893\|Ga0335069_10008192	Not Available	14991	Open in IMG/M
3300032893\|Ga0335069_11404439	Not Available	755	Open in IMG/M
3300032893\|Ga0335069_12038835	Not Available	604	Open in IMG/M
3300032895\|Ga0335074_10010936	All Organisms → cellular organisms → Bacteria	12693	Open in IMG/M
3300032895\|Ga0335074_10015612	All Organisms → cellular organisms → Bacteria	10680	Open in IMG/M
3300032895\|Ga0335074_10069484	All Organisms → cellular organisms → Bacteria → Acidobacteria	4764	Open in IMG/M
3300032895\|Ga0335074_10408985	Not Available	1467	Open in IMG/M
3300032895\|Ga0335074_10605963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1091	Open in IMG/M
3300032895\|Ga0335074_10757620	Not Available	918	Open in IMG/M
3300032896\|Ga0335075_10001016	All Organisms → cellular organisms → Bacteria	47336	Open in IMG/M
3300032896\|Ga0335075_11676518	Not Available	518	Open in IMG/M
3300032897\|Ga0335071_10823033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	877	Open in IMG/M
3300032898\|Ga0335072_10833955	Not Available	875	Open in IMG/M
3300033402\|Ga0326728_10186144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2132	Open in IMG/M
3300033824\|Ga0334840_013538	All Organisms → cellular organisms → Bacteria	2854	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.16%
Host-Associated	Host-Associated	12.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.97%
Aquatic	Environmental → Aquatic	20.18%
Plants	Host-Associated → Plants	12.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.70%
Peat	Environmental → Terrestrial → Peat	30.28%
Freshwater	Environmental → Aquatic → Freshwater	18.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.67%
Marine	Environmental → Aquatic → Marine	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	30.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	28.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.67%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.83%
Clay	Environmental → Terrestrial → Soil → Clay	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	30.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	22.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	15.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.17%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	8.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300007764	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026122	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG (SPAdes)	Environmental	Open in IMG/M
3300026456	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028766	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030048	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_3	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1005817041	3300001213	Wetland	MFLMLTITPVLTALVLSFPIAWLINHVFASGAIHAIFGVERLGYWRVVALFAIRFATRGKIELHGPRK*
JGIcombinedJ13530_1047442791	3300001213	Wetland	MKDESWTLAGWPAVPVFLMLAVTPVLTILVLSLPIAWLVNHIFATNAILAIFGVEHLGYWRVVGLFAILFATQFKI
Ga0070658_100128503	3300005327	Corn Rhizosphere	MKSENWTQKGWPAVPIFLVVVIMPVLTALITSLPVAWLVNHIFAASAIRVIFGVEHLGYWRVVGLFAIVFAIRLRINVHGSPE*
Ga0070659_1012626361	3300005366	Corn Rhizosphere	NVSAEVQGRWGSMKSENWTQKGWPAVPIFLVVVIMPVLTALITSLPVAWLVNHIFAASAIRVIFGVEHLGYWRVVGLFAIVFAIRLRINVHGSPE*
Ga0070714_1000237084	3300005435	Agricultural Soil	MKDESWTLSGWPAVPVFVMLAISPVLTALVISLPVAWLVNHVFAPSAIHAMFGVEHIGYWRIVGLFAILFATQF*
Ga0070679_1006200631	3300005530	Corn Rhizosphere	AVPVFLTAAFAPLLTTLVISIPVVWLVNHIFAAGAIHVIFGVEHLGYWRVVGLFAIGFAVQFKIKIHGSVK*
Ga0070735_100461902	3300005534	Surface Soil	MKDASWTLTGWPAVPVFLMLAVTPVLTALVISLPVAWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILFAIDFKIKIHGPSE*
Ga0068855_1008494511	3300005563	Corn Rhizosphere	MTNESWTWTGWPAVPVFLTAAFAPLLTTLVISIPVVWLVNHIFAAGAIHVIFGVEHLGYWRVVGLFAIGFAVQFKIKIHGSVK*
Ga0068855_1010019012	3300005563	Corn Rhizosphere	MESENLTLKGWLAVPVFLVAVITPVLTALVTSLPISWLVNHIFAASAIRIIFGVERLGYWRVVGLFAIAFAIQFKIKVHGSPK*
Ga0102950_10092673	3300007764	Soil	MFLMLAVTPVLTALVMSLPIAWLINHVFAISAIHAIFGVEHLRYWQAVGLFALWYAARTKIKVHGPSK*
Ga0105241_1000017823	3300009174	Corn Rhizosphere	MKDQSWTLTSWLAVPAFLMLAVTPVVTALVVSLPVAWLINHIFSAAAIYAVFGVERLGFWRVVGLFAVVFAADFKIKFSGISE*
Ga0105241_100091893	3300009174	Corn Rhizosphere	VKDESWTLTGWPAIPVILTLAVTPVATALIVSLPIAWLINHIFSAAAIHAVFGVERLGFWRVVGLFAIVFAANFRIKFSGNSE*
Ga0105237_104065622	3300009545	Corn Rhizosphere	MKDESWTLAGWPAIPVFLTLAVTPVLTALVVSLPIAWLINHIFSAAAIRAVFGVERLGFWRVVGLFAMVFAANFRIRFSGSSE*
Ga0116113_10309721	3300009638	Peatland	MFLMQAVRPLITALTLALPISWLANRELATGAIHAIFGVEHLGYWRVVGLFAIRFAARGK
Ga0074046_107019791	3300010339	Bog Forest Soil	MKDESRTLAGWPAVPVFPMLALTPVLTALVVSLPVAWLVNHIFAANAIHAIFGVEHLGYWRVVGLFAIWFAAQFKFKIHGSSQ*
Ga0134126_108091262	3300010396	Terrestrial Soil	VSAEVQGRWGSMKSENWTQKGWPAVPIFLVVVIMPVLTALITSLPVAWLVNHIFAASAIRVIFGVEHLGYWRVVGLFAIVFAIRLRINVHGSPE*
Ga0134127_123247311	3300010399	Terrestrial Soil	MKDQSWTLASWLAVPAFLMLAVTPVVTALVVSLPVAWLINHIFSAAAIYAVFGVERLGFWRVVGLFAVVFAADFKIKFSGI
Ga0157374_101468403	3300013296	Miscanthus Rhizosphere	MKEGSESLAGWPAVPVSLMMATTPMLTALVVSLPIALLVNHIFAANAIYAIFGIAHLGYWRVVGLFAIWFAIQFKIKFKLSFK*
Ga0157378_104324652	3300013297	Miscanthus Rhizosphere	VSDESWSLRGWSSVPVFLLLGVTPVLTALIMSLPVAWLVNHLFAANLIRSVFGCEHLGYWRSVGLFALWFSARFKIKISGSFQVPKP*
Ga0181528_100465524	3300014167	Bog	MKNENWTLVGWPAVPVFLMLAVTPVLTALVVSLPVAWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILFVTGFKFKIHGSSK*
Ga0181528_104333711	3300014167	Bog	MKDENWNLTGWPAVPAFLMLAVTPVVTALVVSLPVAWLVNRVFATSAIHAVFGVERLGYWRVVGLFAILFVTGFKIKFHGSSK*
Ga0181526_101300074	3300014200	Bog	MKEKWSLVGWPAVPVFLMLAVTPVLTALVISQPVAWLANHIFAGSALHAVFGVEHLGYWRVVGLFAIVFAIGFKIKIHGPTE*
Ga0181537_111102721	3300014201	Bog	MKDESWTLSGWPAVPAILMLAVTPVLTALAISLPVTWLINQVFAPTAIHEVFGVEQIGYWRVVGLFAILFASKFKIKLQGPSK*
Ga0182014_101049903	3300014491	Bog	MNDESRTLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK*
Ga0182014_103045402	3300014491	Bog	MKDESWTLAGWPAVPVFLMLAVTPVLTALVISLPVAWLVNHIFAASAIHAIFGVERLGFWRVMGLLAILFATQFKIKFEGSSK*
Ga0182014_105609161	3300014491	Bog	MRDESGILEGWPAVPLFLMLAVTPVLTALTVSIPIAWLVNRVFAVATIHAVFGVEHLGYW
Ga0182013_105238262	3300014492	Bog	MNDESRTLKGWSAVRMFLMLAVTPVITTLILALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGKIKLQGPRK*
Ga0182016_104266421	3300014493	Bog	MRDESGILEGWPAVPLFLMLAVTPVLTALTVSIPIAWLVNRVFAVATIHAVFGVEHLGYWRVVGLFALGFATQFKIKVHGSSE*
Ga0182011_104140831	3300014496	Fen	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGY
Ga0182012_1000215912	3300014499	Bog	MKDEGKTLTGWRAVRMFLMLALNQSLAALVLSSPIAWLINHVFASGAINAIFGVEHLGYWKVVGLFAIRFAAQGKIEFQGPRT*
Ga0182012_102353173	3300014499	Bog	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYWRAVGLFALLFTTQFKIKVHGPSE*
Ga0182012_105443031	3300014499	Bog	KQERRRCMQDESWTLVGWPAVPLFLMLAVTPVLTALVISLPVAWLVNHIFAATAIHAIFGVEHLGYWRVVGLFAILFATQFKIKFHGASK*
Ga0182030_105628852	3300014838	Bog	MNDESRTLKGWSAVRMFLMLAVTPVITALILALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGKIKLQGPRK*
Ga0187847_104875411	3300017948	Peatland	MKDGSWTLTGWPAVPVFLTLAVTPVLTALVISLPVAWLVNHIFAARAINSIFGVEHLGYWRVVGLFAILFAIDFKIKIHGPSK
Ga0187847_109106672	3300017948	Peatland	MKDEGRTLTGWPAVRMFLMQAVRPLITALTLALPISWLANRELATGAIHAIFGVEHLGYWRVVGLFAIRFAARGKIE
Ga0181520_101592174	3300017988	Bog	MKDESWTLTGRSAVPVVLTMAVTPVLTALVISLPIVWLANHIFAANAIYAIFGVERLGYWRVARLFAILFAAQFKIKFQGSSKRNRPI
Ga0181520_109410943	3300017988	Bog	MNDESRTLQGWPAVRMFLMLAATPVITALVLSIPIEWLVSKEFGIGAVRAIFGVERLGYWRIMGLFALWYTTRIEIKVHGPRK
Ga0187868_10563874	3300018002	Peatland	MKDESWTLAGWSAIPVFLMIAVTPVLTALVISLPVAWLVNHIFAANSIHAIFGVEHLGYWRVMGLFAILFATKFKIEFHGSSK
Ga0187810_102925751	3300018012	Freshwater Sediment	MKDVGTTLEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNHVFAVSAIHAIFGVDRLGYWRVVGLFALVFATQFKIKVHGPSK
Ga0187810_103403242	3300018012	Freshwater Sediment	MKDESRTLTGWPAVHIFLMLAGTPVLTVLVMSLPVAWLVNHLFAIEAIHAVFGVGHL
Ga0187863_100537895	3300018034	Peatland	MKNENWTLVGWPAVPVFLMLAVTPVLTALVVSLPVAWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILL
Ga0187863_106159351	3300018034	Peatland	MKEKWSLVGWPAVPVFLMLAVTPVLTALVISQPVAWLANHIFAGSALHAVFGVEHLGYWRVVGLFAIVFAIGFKIKIH
Ga0187887_109380721	3300018043	Peatland	MKNENWTLVGWPAVPVFLMLAVTPVLTALVVSLPVAWLVNHIFAASAIHAIFGVEHLGYWRV
Ga0187890_100024026	3300018044	Peatland	MKDESWTLAGWPAVPVFLMLAVTPVLTALVISLPVDWLVNHIFAAIAIHAVFGVEHLGYWRVVGLFAILFAAGFKIKFHGSSK
Ga0187890_102269031	3300018044	Peatland	MKDGSWTLTGWPAVPVFLTLAVTPVLTALVISQPVAWLANHIFAGSALHAVFGVEHLGYWRVVGLFAIVFAIGFKIKIHGPTE
Ga0187851_108386311	3300018046	Peatland	MNDESRTLKGWSAVRMFLMLAVTPVITTLILALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGEIKLQRPRK
Ga0187859_109317131	3300018047	Peatland	VFLMLAVTPVLTALVISQPVAWLANHIFAGSALHAVFGVEHLGYWRVVGLFAILFAIDFKIKIHGPSK
Ga0210394_110483512	3300021420	Soil	MKDESRTLEGWPAVPLFLMLAVTPLLTALAMSIPIAWLVNHVFAVGAIHAIFGVDRLGYWRVVGLFALLFATQFKIKVHGHSK
Ga0224554_10055794	3300023068	Soil	MNDESRTLKGWSAVRMFLMLAVTPVITTLILALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGKIKLQGPRK
Ga0207705_100130048	3300025909	Corn Rhizosphere	MKSENWTQKGWPAVPIFLVVVIMPVLTALITSLPVAWLVNHIFAASAIRVIFGVEHLGYWRVVGLFAIVFAIRLRINVHGSPE
Ga0207654_1000005956	3300025911	Corn Rhizosphere	MKDQSWTLTSWLAVPAFLMLAVTPVVTALVVSLPVAWLINHIFSAAAIYAVFGVERLGFWRVVGLFAVVFAADFKIKFSGISE
Ga0207654_100152405	3300025911	Corn Rhizosphere	VKDESWTLTGWPAIPVILTLAVTPVATALIVSLPIAWLINHIFSAAAIHAVFGVERLGFWRVVGLFAIVFAANFRIKFSGNSE
Ga0207667_101520415	3300025949	Corn Rhizosphere	MTNESWTWTGWPAVPVFLTAAFAPLLTTLVISIPVVWLVNHIFAAGAIHVIFGVEHLGYWRVVGLFAIGFAVQFKIKIHGSVK
Ga0207702_115769122	3300026078	Corn Rhizosphere	MTNESWTWTGWPAVPVFLTAAFAPLLTTLVISIPVVWLVNHIFAAGAIHVIFGVEHLGYWRVVGLFAIG
Ga0209926_10485011	3300026122	Soil	RFCMKDGSMTLTGWPAVRMFLMLAVTPVLTALVMSLPIAWLINHVFAISAIHAIFGVEHLRYWQAVGLFALWYAARTKIKVHGPSK
Ga0255351_100048314	3300026456	Soil	MRDESGILEGWPAVPLFLMLAVTPVLTALTVSIPIAWLVNRVFAVATIHAVFGVEHLGYWRVVGLFALGFATQFKIKVHGSSE
Ga0209004_100006515	3300027376	Forest Soil	MKDESWTLSGWPAVPAILMLAVTPVLTALAISLPVTWLINQVFAPTAINKVFGVEQIGYWRVVGLFAILFASKFKIKLHGPFARRESDSREESR
Ga0209040_105445492	3300027824	Bog Forest Soil	TVPLFLMLAVTPALTALVISLPVAWLVNHIFAPTAIHAILGVEHLGYWRVLGVFALLFATQFKINFQGASK
Ga0209168_100285337	3300027986	Surface Soil	MKDASWTLTGWPAVPVFLMLAVTPVLTALVISLPVAWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILFAIDFKIKIHGPSE
Ga0302144_100368414	3300028560	Bog	MQDESWTLVGWPAVPLFLMLAVTPVLTALVISLPVAWLVNHIFAATAIHAIFGVEHLGYWRVVGLFAILFATQFKIKFHGASK
Ga0302144_100711762	3300028560	Bog	MKDEGWTPGGLPAVPVFLMLAVTPVLTALAVSFPIAWLVNLIFAAKAIRAVFGVERLDYWRVVGLFAIVFAAGFKIRLQGPSI
Ga0302198_103325711	3300028765	Bog	MRDESGILEGWPAVPLFLMLAVTPVLTALVAAVPVAWLVNHVFAIDAIHAVFGVEHLGYWRVVGLFTLSFATQFKIKVHGPSK
Ga0302269_11432582	3300028766	Bog	MNDESRTLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIR
Ga0302189_103576002	3300028788	Bog	LSTQERRSGMKDEGWTPGGLPAVPVFLMLAVTPVLTALAVSFPIAWLVNLIFAAKAIRAVFGVERLDYWRVVGLFAIVFAAGFKIRLQGPSI
Ga0302265_11226881	3300028859	Bog	MNDESRTLKGWSAVRMFLMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0302278_103134371	3300028866	Bog	MRDESGILEGWPAVPLFLMLAVTPVLTALVAAVPVAWLVNHVFAIDAIHAVFGVEHLGYWRVVGLFTLSFATQFKIKVHGP
Ga0302278_103647751	3300028866	Bog	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYWRAVGLFALLFTTQFKIKVHGPSE
Ga0302197_103911462	3300028873	Bog	MNDESRTLKGWSAVRMFLMLAVTPVITALILALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGKIKLQGPRK
Ga0302200_100358831	3300028909	Bog	TLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0311361_111314371	3300029911	Bog	MRDESGILEGWPAVPLFLMLAVTPVLTAQVAAVPVAWLVNHVFAIDAIHAVFGVEHLGYWRVVGLFTLSFATQFKIKVHGPSK
Ga0311358_100142261	3300029915	Bog	MNDESRTLKGWSAVRMFLMLAVTPVITALTLALPISWLVNREFAAGAIHAVFGVERLGYWKVVGLFAIRFATRGKIKLQGPRK
Ga0311326_100622621	3300029917	Bog	AVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0302143_10450631	3300029918	Bog	ELAVIRLIAKQERRRCMQDESWTLVGWPAVPLFLMLAVTPVLTALVISLPVAWLVNHIFAATAIHAIFGVEHLGYWRVVGLFAILFATQFKIKFHGASK
Ga0311363_101740413	3300029922	Fen	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYWRAVGLFALLFTTQFKIKVHG
Ga0311328_107468532	3300029939	Bog	AAAEKRWFSMNDESRTLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0311331_116930251	3300029954	Bog	VFLMLAVAPVLTGLVISLPAAWLINHIFAASAIHAIFGVEHIGYWRVMGMFALIFATHFKIKFTGSSK
Ga0311342_102910932	3300029955	Bog	MNDENITLTGWPAVRMFFMLAVTPVLTTLTLAFPISWLVNREFATGAIHAIFGVERLDYWRVVGLFAIRLAARGKIEIHGPRK
Ga0302270_104890541	3300030011	Bog	MKDEGWTPGGLPAVPVFLMLAVTPVLTALAVSFPIAWLVNLIFAAKAIRAVFGVERLDYWRVVG
Ga0302274_102766451	3300030041	Bog	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYW
Ga0302273_10416603	3300030048	Bog	MKNESKTLTGWLAVRMFLALAATPVLTAVVMSIPVAWLINHVFAVGAIHAIFGVEHLGYWRIVGLFALWFATRFKIKVHVPSK
Ga0311360_101363432	3300030339	Bog	MKDENWTLAGWPAVPVFLMLAVTPVLTALVISLPVACLVNHIFAANAIHAIFGVEQLGYWRVVGLFAILFATKFKIKFQGSSK
Ga0302192_102065761	3300030507	Bog	RTLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0302324_1014892172	3300031236	Palsa	MRDESRILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYWRAVGLF
Ga0302187_102385322	3300031259	Bog	LAVTPVLTALVMSIPVAWLVNRVFAVGAIHAIFGVERFGYWRAVGLFALLFTTQFKIKVHGPSE
Ga0302187_103447252	3300031259	Bog	MNDESRTLKGWPAVRMFFMLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGP
Ga0302187_104979761	3300031259	Bog	MKDEGWTPGGLPAVPVFLMLAVTPVLTALAVSFPIAWLVNLIFAAKAIRAVFGVERLDYWRVVGLFAIVFAAGFKIR
Ga0311364_113950451	3300031521	Fen	MKDESWTLAGWPAVPFFLMLAVTPVLTVLVLSLPIAWLVNHIFATNAILAIFGVEHLGYWRVV
Ga0307374_102723112	3300031670	Soil	MKDEGKTLKGWPAVGMFLMLAVTPVLTALVMSLPIAWLVNRVFATGAIRAIFGVERLGYCKVVGLFAIWFGT
Ga0335082_100518983	3300032782	Soil	MQDEEKTLNGWPAARKFLMLAFTPVLTALVMSIPIRWLVNHVFAVGAVQEIFGVERLDYWRTLGLFAICYATRIRVGIHGPQK
Ga0335078_102957543	3300032805	Soil	MFLLVAVTPVLTALIMSLPVTWLVNHLFAVNVIHAIFGVAHLGYWRVVGLFALWFAMGFKVAVHGPSK
Ga0335070_114960691	3300032829	Soil	MKGENWTLVGWPAVPVFLMLAVTPVLTALFMSLPFTWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAIFFAIDFKIKFRGSSE
Ga0335070_120784341	3300032829	Soil	MKDKNWNLVGWSVVPVFLLLAATPVLTALVISRPVAWLVNHIFAASAIHAIFGVEHLGYWRVVG
Ga0335069_100081927	3300032893	Soil	MKDKNWNLVGWSVVPVFLLLAATPVLTALVISRPVAWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILFAARFEFKIRGSSE
Ga0335069_114044392	3300032893	Soil	MKDESRILAGWPAVTTFLTLAVTPVLTAFVVSLPVAWLVNHLFAVNAIEAVFGVKQIGYWRVVGLFGLWFAARFKVKVQGPSK
Ga0335069_120388351	3300032893	Soil	MKDENWTLAGWPAVPVFLMLAVTPVLTALVISLPLAWLVNHVFAASAIHAIFGVEHLGYWRVMGLFAILFAIRFKIKIRGSSK
Ga0335074_100109362	3300032895	Soil	VIERIANRERRFYMKDGSRTLRGWPAARMVLMLAITPVLTALVMSLPIAWLVNHVFAMGAIHAIFGVEHLGYWQVMGLFALYFAIRFKIKFEAPSK
Ga0335074_100156122	3300032895	Soil	MRDESRILEGWPVVPLFLMMALTPVLTALAMSIPVAWLVNRVFAVGAIHAVFGVEHLGYWRVVGLFALWFATQFKINVHGPSQ
Ga0335074_100694843	3300032895	Soil	MKDGSRTLRGWPAARMFLMLAITPVLTALVMSLPIAWLVNHVFAMTAIHAIFGVEYLGYWRVVGLFALYFAIRFKVKFEAPSK
Ga0335074_104089851	3300032895	Soil	MKDESWTLSGWPAVPLFLALAMTPVLTALVISLPVSWLINHVFSVGAIRAIFGVEHLGYWRVVGLFALLFAAGFKLNVKGPSK
Ga0335074_106059632	3300032895	Soil	VIERIANRERRFYVKDGSRTLRGWPAVRMFLMLAITPVLTALVMSLPIAWLVNHVFAIGAIHAIFGEEHLRYWQVVGLFALYFAIRFKVKFEAPSK
Ga0335074_107576202	3300032895	Soil	MKDVGTTLEGWPAVPLFLMLAATPVLTALVMSIPVAWLVNHVFAVGLIHGVFGVDHLGYWRVVGLFAL
Ga0335075_1000101620	3300032896	Soil	MKDGSRTLRGWPAARMFLMLAITPVLTALVMSLPIAWLVNHVFAMTAIHAIFGVEQLGYWQVVGLFALYFAIRFKVKFEAPSK
Ga0335075_116765181	3300032896	Soil	ILEGWPAVPLFLMLAVTPVLTALVMSIPVAWLVNRVFAVGAIHAVFGVEHLGYWRVVGLFALWFATRFKINVHGPSE
Ga0335071_108230331	3300032897	Soil	NWTLVGWPAVPVFLMLAVTPVLTALFMSLPFTWLVNHIFAASAIHAIFGVEHLGYWRVVGLFAILFAARFEFKIRGSSE
Ga0335072_108339552	3300032898	Soil	MKDESTVLAGWPAVTTFLMLAVTPVLTALVVSLPVAWLVNHVFAMNAIETLFGVKQIGYWRVVGLFGLWFAARFKVKVQGPSK
Ga0326728_101861443	3300033402	Peat Soil	MKDQSWSLAGFPAVPLFLMLAAMPVLTALVISLPVVWLANHIFAPNAIHAIFGVEHLGYWRVMGLFAILFAVQFRIKFQGSSE
Ga0326727_104895281	3300033405	Peat Soil	MKDQSWSLAGFPAVPLFLMLAAMPVLTALVISLPVVWLANHIFAPNAIHAIFGVE
Ga0334840_013538_2233_2430	3300033824	Soil	MLAVTPVITALTLALPISWVVNREFAAGAIHAIFGVERLGYWRVVGLFAIRFATRGKIELHGPRK
Ga0370494_016497_1_174	3300034130	Untreated Peat Soil	MRDESGILEGWPAVPLFLMLAVTPVLTALTVSIPIAWLVNRVFAVAAIHAVFGVEHLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088279

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences