Sample 3300026064

Overview

Basic Information
IMG/M Taxon OID	3300026064 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116111 \| Ga0208146
Sample Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	81679671
Sequencing Scaffolds	26
Novel Protein Genes	28
Associated Families	27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Fairfield, San Francisco Bay, California
Coordinates	Lat. (^o)	38.224518	Long. (^o)	-122.019257	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000676	Metagenome / Metatranscriptome	941	Y
F000769	Metagenome / Metatranscriptome	898	Y
F002401	Metagenome / Metatranscriptome	563	Y
F004798	Metagenome / Metatranscriptome	423	Y
F007038	Metagenome / Metatranscriptome	359	Y
F008255	Metagenome / Metatranscriptome	336	Y
F016165	Metagenome / Metatranscriptome	249	Y
F016540	Metagenome / Metatranscriptome	246	Y
F016687	Metagenome / Metatranscriptome	245	Y
F023130	Metagenome / Metatranscriptome	211	Y
F029036	Metagenome	189	N
F033859	Metagenome / Metatranscriptome	176	Y
F034114	Metagenome / Metatranscriptome	175	Y
F052021	Metagenome / Metatranscriptome	143	Y
F052686	Metagenome / Metatranscriptome	142	Y
F056752	Metagenome / Metatranscriptome	137	Y
F064856	Metagenome	128	N
F070270	Metagenome	123	Y
F072876	Metagenome	121	Y
F073725	Metagenome / Metatranscriptome	120	N
F081923	Metagenome / Metatranscriptome	114	N
F085853	Metagenome / Metatranscriptome	111	Y
F086800	Metagenome / Metatranscriptome	110	Y
F095902	Metagenome / Metatranscriptome	105	Y
F097376	Metagenome / Metatranscriptome	104	Y
F101430	Metagenome	102	Y
F105452	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F000676

Metagenome / Metatranscriptome

941

F000769

Metagenome / Metatranscriptome

898

F002401

Metagenome / Metatranscriptome

563

F004798

Metagenome / Metatranscriptome

423

F007038

Metagenome / Metatranscriptome

359

F008255

Metagenome / Metatranscriptome

336

F016165

Metagenome / Metatranscriptome

249

F016540

Metagenome / Metatranscriptome

246

F016687

Metagenome / Metatranscriptome

245

F023130

Metagenome / Metatranscriptome

211

F029036

Metagenome

189

F033859

Metagenome / Metatranscriptome

176

F034114

Metagenome / Metatranscriptome

175

F052021

Metagenome / Metatranscriptome

143

F052686

Metagenome / Metatranscriptome

142

F056752

Metagenome / Metatranscriptome

137

F064856

Metagenome

128

F070270

Metagenome

123

F072876

Metagenome

121

F073725

Metagenome / Metatranscriptome

120

F081923

Metagenome / Metatranscriptome

114

F085853

Metagenome / Metatranscriptome

111

F086800

Metagenome / Metatranscriptome

110

F095902

Metagenome / Metatranscriptome

105

F097376

Metagenome / Metatranscriptome

104

F101430

Metagenome

102

F105452

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208146_1000667	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
Ga0208146_1000904	All Organisms → cellular organisms → Bacteria → Proteobacteria	2223	Open in IMG/M
Ga0208146_1002438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1536	Open in IMG/M
Ga0208146_1003532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1335	Open in IMG/M
Ga0208146_1004805	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
Ga0208146_1004908	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
Ga0208146_1005486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1128	Open in IMG/M
Ga0208146_1005907	Not Available	1096	Open in IMG/M
Ga0208146_1007417	Not Available	1004	Open in IMG/M
Ga0208146_1008740	Not Available	943	Open in IMG/M
Ga0208146_1013339	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
Ga0208146_1013918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	773	Open in IMG/M
Ga0208146_1015366	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
Ga0208146_1015797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	733	Open in IMG/M
Ga0208146_1021399	Not Available	645	Open in IMG/M
Ga0208146_1022338	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	634	Open in IMG/M
Ga0208146_1024902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	604	Open in IMG/M
Ga0208146_1027838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	574	Open in IMG/M
Ga0208146_1029826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	558	Open in IMG/M
Ga0208146_1031886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	541	Open in IMG/M
Ga0208146_1032731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	535	Open in IMG/M
Ga0208146_1035537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	517	Open in IMG/M
Ga0208146_1037119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	507	Open in IMG/M
Ga0208146_1037635	Not Available	504	Open in IMG/M
Ga0208146_1038033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	502	Open in IMG/M
Ga0208146_1038219	Not Available	501	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208146_1000667

All Organisms → cellular organisms → Bacteria

2484

Open in IMG/M

Ga0208146_1000904

All Organisms → cellular organisms → Bacteria → Proteobacteria

2223

Open in IMG/M

Ga0208146_1002438

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

1536

Open in IMG/M

Ga0208146_1003532

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

1335

Open in IMG/M

Ga0208146_1004805

All Organisms → cellular organisms → Bacteria

1191

Open in IMG/M

Ga0208146_1004908

All Organisms → cellular organisms → Bacteria → Proteobacteria

1181

Open in IMG/M

Ga0208146_1005486

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae

1128

Open in IMG/M

Ga0208146_1005907

Not Available

1096

Open in IMG/M

Ga0208146_1007417

Not Available

1004

Open in IMG/M

Ga0208146_1008740

Not Available

943

Open in IMG/M

Ga0208146_1013339

All Organisms → cellular organisms → Bacteria

787

Open in IMG/M

Ga0208146_1013918

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium

773

Open in IMG/M

Ga0208146_1015366

All Organisms → cellular organisms → Bacteria

741

Open in IMG/M

Ga0208146_1015797

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

733

Open in IMG/M

Ga0208146_1021399

Not Available

645

Open in IMG/M

Ga0208146_1022338

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

634

Open in IMG/M

Ga0208146_1024902

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

604

Open in IMG/M

Ga0208146_1027838

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

574

Open in IMG/M

Ga0208146_1029826

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

558

Open in IMG/M

Ga0208146_1031886

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

541

Open in IMG/M

Ga0208146_1032731

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

535

Open in IMG/M

Ga0208146_1035537

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

517

Open in IMG/M

Ga0208146_1037119

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium

507

Open in IMG/M

Ga0208146_1037635

Not Available

504

Open in IMG/M

Ga0208146_1038033

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7

502

Open in IMG/M

Ga0208146_1038219

Not Available

501

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208146_1000667	Ga0208146_10006674	F064856	SFPLITAMRWIGITVVVVVAACIAALLLSQQKVLWHVTEPGMTLPEVRAVLPHAVPPPQPKSLDNGLSLGLVAPQVSNLDRAFNAELYFDERGLQQVLLLPTRLLVPSAAMIEFDALRQAASRRYGREIAGTGTRAANVPAEVHWRAGPVTVTLRVEQRGEYAVVMMSYAAARGRS
Ga0208146_1000904	Ga0208146_10009046	F073725	KKRLIMEKRAARRHRIDSSIVCSHLNSVGFGEPVDGRMKNCCVNGLYAELQSRFKTGTVLVVRSTGSSCGFSGDEGFRSLAVAEVKWTESKSVEGGICYATGLKYLMI
Ga0208146_1002438	Ga0208146_10024382	F007038	MTRRVFLDTEWTAPPWSDRTELMWIGLADEGGRSWYGISSEVVIDPSTNAFISGAFGLIDPAEPRLSRAQLAAAVMDFCGTVDEFWVWIPTLESFSAWSGLGDGAPESYAKCRDIDLRMLRALLNPWPAGWPKSVHDLNAAAVAAAVEIPPRASNHLHPQVHADWNRRLFDLIQAAPRS
Ga0208146_1003532	Ga0208146_10035321	F016540	MSQSLDAIPVLTDIVEDDLGTVATIDSTMLFLGELEAHLTAAIHEQADELVHNACREMEALLLEQVSDRLRAQLPALVARIVDEHFHGPARTN
Ga0208146_1004805	Ga0208146_10048051	F095902	HNRVTLRPQFSLGIAGGDDGPAAAHTTERSRGFKTEFPSLSCDQVGNLMGFEMPPHILDRIEFGRISRQPFDDEATVGGCHIVFDQQAPVDRGAIPDDQHFPRNMALEMAQKLDDLETFDAASMNLKIEPPEHQTADDRKAFPVEGLVQHRGLPTQRPSARPGGPGAQAAFVDEDDGSSLLAGLFFNAGHSVRCQRRIFFSSRSTARRSGRWQLKPLAPSTRQT
Ga0208146_1004908	Ga0208146_10049083	F023130	MTRRFWVPATALLLSSILVMTGSISHDAMAGIFVLSQSPGASIVEGEGPAKMGPAAEFETHSHRDVSSRYWMRGIVLLLLILLILWLIYRTFTG
Ga0208146_1005486	Ga0208146_10054863	F101430	MTEHVLTWHPKVPGELPAAEGSDEQLRLIGMPTGLVRPARQTLAADQLTAAARTRLHEITADLRSRTEDPSAPPRRFSLADLD
Ga0208146_1005907	Ga0208146_10059072	F008255	RKESVETVREAATGSAENLKALKSPVRTLARSGIKVTSVSQSAVANLIELQSDMLTSAISDAALRLERAARAETVLDLVRDQIEMIPATRTRIVEDAQRAASIFKHAGRDLRGVATHLYERVVEPTEQKAVPAAKKAKRKVKRATRKTTARTRKVAA
Ga0208146_1006940	Ga0208146_10069402	F052686	MTEKPRGKAPVPPTAGHDPGHLGVNDRGNVTWEWADERDLQADDTLGAAERVRALVDPSLQVKDDDDD
Ga0208146_1007417	Ga0208146_10074171	F034114	NPVPVIMRETSVAAGAVNENLLAGSAFEFARQNSLVSIGINQSATGGFATINSGADVVAEEFAPPINTVYPIIPDGMYFSDVAAAGDRLVIRYRNPTGGALTVRVVCQVTPL
Ga0208146_1008740	Ga0208146_10087401	F097376	MKKAVSPKKNKTATDVVPQKKQTKTGPVELDLAELKKVSGGLPKGGWER
Ga0208146_1013106	Ga0208146_10131061	F085853	DPWMECRLRQYMEARAAQYQKILANEIAAPLEKLNIKEFDQWKAELQAGMKKYAERFRSEMTTNPSFWRNFNQKAPIYQSMIEGVHRFWSDHQFEEIGRRMEQAAAASQAEVEQLNQKKEQIQKGKEGLNNALKNIKTRFGKLGLEAEDAILLAPIAFAALFLFAALNLCQNIQLRKSFHRLFQARDPQKVAITDSEIALAMPLWVDPLAPPIQRRLKLAVMMIPAIASVLALAVVFYCWTIPDAFPGLTGMDYVKYILYYLLS
Ga0208146_1013339	Ga0208146_10133391	F016165	RGIDAPGTRMLLKILSGVLGVAGLCWLALLFSSRAILVGERVEAAALHQQLVCTYFTGSGTMRKEYWYSKSDRFGRAACPRWESVREPE
Ga0208146_1013918	Ga0208146_10139181	F016687	AGSSSAWDTRWQFKQDAPSNNYGSGTRDIEMQKKFDYNSMNKFKGTIETSSGYTIMRNLNGDTMRGYIDKDGSGLLRDQNGNFHNVNTRW
Ga0208146_1015366	Ga0208146_10153662	F052021	ELDCSKNCKSVVQTCEAEGRNRGECENRHNQCVSNCAFA
Ga0208146_1015797	Ga0208146_10157971	F002401	VITLPADAIYVCVLDRAGAVEQTVIGFAPKVHDLCRRHPEMGPCQYERNQCRAAGGRVYGSGGEEITLAREAEYDRKVMRVRFRAN
Ga0208146_1021399	Ga0208146_10213992	F029036	ENKAVGSIVFVPAVGDGNERSPANFQINISMSAAKFEALLKVAISGRLPSKFFVNAGERASARETRGMGYVIRAGVRTKFWDNKRYRTLPVTNFSVILPITVPEAPESPAFEEDRAIAESIASNDQVAELADEFAVFQGETKNALTAVVSVVAVIGVLLLFINLVLIIK
Ga0208146_1022338	Ga0208146_10223382	F081923	MKRLIVNISTAIRPVMHRKHFFVMAILGAALAVACTMANTGSIQTSAEVTRQFEGLQINPNYRYWYLNQENNPFGVIGLDREYGFAGGPVWRAVESDSPIFRKVVGLVESFPVASSLTTGYTIFEQQGRPIGVWYSSIGLGVTIDPATKT
Ga0208146_1024902	Ga0208146_10249021	F004798	LIVEMQKRLFALMENQMSDVPGVKQAKAAMGMMPDLTQMQNVVSAMQGVMSSGGSAFESMQKVMGDFARISGMKR
Ga0208146_1027838	Ga0208146_10278382	F070270	SFTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRSALKI
Ga0208146_1029826	Ga0208146_10298261	F033859	VACVALSAQIPASAQDLSPAASEWRSYCQTYLEAVDGNAAASDLDVTYCLGVTKGLLNGLQIGSQIGALSFGSRIAVKYKLDADEVFKLFQTQDPARLIGICSPASSNAADHVKAVLAYLEKNPDDLKRPIGEVFFEGLQAAYPCP
Ga0208146_1031886	Ga0208146_10318861	F000676	SFSDPMWQVKDRSVAGLRIAASGGIGQSLALGGLVAVRQSDVSEWVLGVVRRLNKLSNEDVEAGVSLIAERVVPVVLHTKRDPKEDLGFIVNGIDMSTIGARFEGLYLPPPSRPDKPLSVKTLIVPTSEYADGRQVILTTDRSVYTVALKNLVEQRSEWSWTAIQIVEKRMRE
Ga0208146_1032731	Ga0208146_10327311	F000676	RSVAGLRISAAGGIGQSLVLGALVAVRQSDAIDWVLGAVRRLNKVSNDEVEAGVSIIADRIVPITVHAKRPTQDDLGMVVNGVDVSVMGTRFDALYLPPPSRPERPLAVKTLIVPTSEYADGRNVILTTGHSVYTIALRHLVEQRAEWSWAAFQIIDKKPTDI
Ga0208146_1035537	Ga0208146_10355371	F072876	YTCMEMSKQSYDDVIQMPVQRFYNYLKWKSNLEEEKKKMLAENIISGLGGAM
Ga0208146_1037119	Ga0208146_10371192	F086800	MLRRTPLRRTGRKADPVTSDVRFAVLERDRGCVAVTLGEDPADCRGRLTLDHVKDQPRMGKRAPSDARHLATVCEFHHLDGWATSHRPELRAYLEATR
Ga0208146_1037635	Ga0208146_10376351	F000769	EVNPLLAGIMWLERPQVMLFREGIQVRADSFKGDRPDCPRGCSGRLHRYGFYWRFCKPTGAERFRVQRFLCGSCGHTVSVLPGTRLTYRPLEVGRLEGFFDTQAGIRTGLDPPPGLVEAGCLQRAWNRLLTRVPILKHAFGQLLPSKLHTAQQLWKALRRGMGSAEE
Ga0208146_1038033	Ga0208146_10380331	F056752	YQWTSVDLDGDGIADDEIYFDCSASPSSLYHLVPQMLQNNWSKTMREGYAGKNPFKETAPFVELVTDMDTCWFLDRLGGQQGVGAGNTPNVNANWRFTQWGDQSAYWRYGFSGQIGNYLTRVDELGLRFNYVADLGAAANGGNGNRYRYQIVLPYTNGTTTGAGGAA
Ga0208146_1038219	Ga0208146_10382192	F105452	MTPSIRPWQRAGVVIIGSAVLAGCQLGPRPVHDNWALPRGEWRIVAHSAPGIAAMSPVEAAGYVGGTISYGTDSVASGSDRCAKPVYLANLVYAERYLYRQYGLRTANLGLYRHQDVRVTEVFCAGT

Scaffold ID

Protein ID

Family

Sequence

Ga0208146_1000667

Ga0208146_10006674

F064856

SFPLITAMRWIGITVVVVVAACIAALLLSQQKVLWHVTEPGMTLPEVRAVLPHAVPPPQPKSLDNGLSLGLVAPQVSNLDRAFNAELYFDERGLQQVLLLPTRLLVPSAAMIEFDALRQAASRRYGREIAGTGTRAANVPAEVHWRAGPVTVTLRVEQRGEYAVVMMSYAAARGRS

Ga0208146_1000904

Ga0208146_10009046

F073725

KKRLIMEKRAARRHRIDSSIVCSHLNSVGFGEPVDGRMKNCCVNGLYAELQSRFKTGTVLVVRSTGSSCGFSGDEGFRSLAVAEVKWTESKSVEGGICYATGLKYLMI

Ga0208146_1002438

Ga0208146_10024382

F007038

MTRRVFLDTEWTAPPWSDRTELMWIGLADEGGRSWYGISSEVVIDPSTNAFISGAFGLIDPAEPRLSRAQLAAAVMDFCGTVDEFWVWIPTLESFSAWSGLGDGAPESYAKCRDIDLRMLRALLNPWPAGWPKSVHDLNAAAVAAAVEIPPRASNHLHPQVHADWNRRLFDLIQAAPRS

Ga0208146_1003532

Ga0208146_10035321

F016540

MSQSLDAIPVLTDIVEDDLGTVATIDSTMLFLGELEAHLTAAIHEQADELVHNACREMEALLLEQVSDRLRAQLPALVARIVDEHFHGPARTN

Ga0208146_1004805

Ga0208146_10048051

F095902

HNRVTLRPQFSLGIAGGDDGPAAAHTTERSRGFKTEFPSLSCDQVGNLMGFEMPPHILDRIEFGRISRQPFDDEATVGGCHIVFDQQAPVDRGAIPDDQHFPRNMALEMAQKLDDLETFDAASMNLKIEPPEHQTADDRKAFPVEGLVQHRGLPTQRPSARPGGPGAQAAFVDEDDGSSLLAGLFFNAGHSVRCQRRIFFSSRSTARRSGRWQLKPLAPSTRQT

Ga0208146_1004908

Ga0208146_10049083

F023130

MTRRFWVPATALLLSSILVMTGSISHDAMAGIFVLSQSPGASIVEGEGPAKMGPAAEFETHSHRDVSSRYWMRGIVLLLLILLILWLIYRTFTG

Ga0208146_1005486

Ga0208146_10054863

F101430

MTEHVLTWHPKVPGELPAAEGSDEQLRLIGMPTGLVRPARQTLAADQLTAAARTRLHEITADLRSRTEDPSAPPRRFSLADLD

Ga0208146_1005907

Ga0208146_10059072

F008255

RKESVETVREAATGSAENLKALKSPVRTLARSGIKVTSVSQSAVANLIELQSDMLTSAISDAALRLERAARAETVLDLVRDQIEMIPATRTRIVEDAQRAASIFKHAGRDLRGVATHLYERVVEPTEQKAVPAAKKAKRKVKRATRKTTARTRKVAA

Ga0208146_1006940

Ga0208146_10069402

F052686

MTEKPRGKAPVPPTAGHDPGHLGVNDRGNVTWEWADERDLQADDTLGAAERVRALVDPSLQVKDDDDD

Ga0208146_1007417

Ga0208146_10074171

F034114

NPVPVIMRETSVAAGAVNENLLAGSAFEFARQNSLVSIGINQSATGGFATINSGADVVAEEFAPPINTVYPIIPDGMYFSDVAAAGDRLVIRYRNPTGGALTVRVVCQVTPL

Ga0208146_1008740

Ga0208146_10087401

F097376

MKKAVSPKKNKTATDVVPQKKQTKTGPVELDLAELKKVSGGLPKGGWER

Ga0208146_1013106

Ga0208146_10131061

F085853

DPWMECRLRQYMEARAAQYQKILANEIAAPLEKLNIKEFDQWKAELQAGMKKYAERFRSEMTTNPSFWRNFNQKAPIYQSMIEGVHRFWSDHQFEEIGRRMEQAAAASQAEVEQLNQKKEQIQKGKEGLNNALKNIKTRFGKLGLEAEDAILLAPIAFAALFLFAALNLCQNIQLRKSFHRLFQARDPQKVAITDSEIALAMPLWVDPLAPPIQRRLKLAVMMIPAIASVLALAVVFYCWTIPDAFPGLTGMDYVKYILYYLLS

Ga0208146_1013339

Ga0208146_10133391

F016165

RGIDAPGTRMLLKILSGVLGVAGLCWLALLFSSRAILVGERVEAAALHQQLVCTYFTGSGTMRKEYWYSKSDRFGRAACPRWESVREPE

Ga0208146_1013918

Ga0208146_10139181

F016687

AGSSSAWDTRWQFKQDAPSNNYGSGTRDIEMQKKFDYNSMNKFKGTIETSSGYTIMRNLNGDTMRGYIDKDGSGLLRDQNGNFHNVNTRW

Ga0208146_1015366

Ga0208146_10153662

F052021

ELDCSKNCKSVVQTCEAEGRNRGECENRHNQCVSNCAFA

Ga0208146_1015797

Ga0208146_10157971

F002401

VITLPADAIYVCVLDRAGAVEQTVIGFAPKVHDLCRRHPEMGPCQYERNQCRAAGGRVYGSGGEEITLAREAEYDRKVMRVRFRAN

Ga0208146_1021399

Ga0208146_10213992

F029036

ENKAVGSIVFVPAVGDGNERSPANFQINISMSAAKFEALLKVAISGRLPSKFFVNAGERASARETRGMGYVIRAGVRTKFWDNKRYRTLPVTNFSVILPITVPEAPESPAFEEDRAIAESIASNDQVAELADEFAVFQGETKNALTAVVSVVAVIGVLLLFINLVLIIK

Ga0208146_1022338

Ga0208146_10223382

F081923

MKRLIVNISTAIRPVMHRKHFFVMAILGAALAVACTMANTGSIQTSAEVTRQFEGLQINPNYRYWYLNQENNPFGVIGLDREYGFAGGPVWRAVESDSPIFRKVVGLVESFPVASSLTTGYTIFEQQGRPIGVWYSSIGLGVTIDPATKT

Ga0208146_1024902

Ga0208146_10249021

F004798

LIVEMQKRLFALMENQMSDVPGVKQAKAAMGMMPDLTQMQNVVSAMQGVMSSGGSAFESMQKVMGDFARISGMKR

Ga0208146_1027838

Ga0208146_10278382

F070270

SFTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRSALKI

Ga0208146_1029826

Ga0208146_10298261

F033859

VACVALSAQIPASAQDLSPAASEWRSYCQTYLEAVDGNAAASDLDVTYCLGVTKGLLNGLQIGSQIGALSFGSRIAVKYKLDADEVFKLFQTQDPARLIGICSPASSNAADHVKAVLAYLEKNPDDLKRPIGEVFFEGLQAAYPCP

Ga0208146_1031886

Ga0208146_10318861

F000676

SFSDPMWQVKDRSVAGLRIAASGGIGQSLALGGLVAVRQSDVSEWVLGVVRRLNKLSNEDVEAGVSLIAERVVPVVLHTKRDPKEDLGFIVNGIDMSTIGARFEGLYLPPPSRPDKPLSVKTLIVPTSEYADGRQVILTTDRSVYTVALKNLVEQRSEWSWTAIQIVEKRMRE

Ga0208146_1032731

Ga0208146_10327311

F000676

RSVAGLRISAAGGIGQSLVLGALVAVRQSDAIDWVLGAVRRLNKVSNDEVEAGVSIIADRIVPITVHAKRPTQDDLGMVVNGVDVSVMGTRFDALYLPPPSRPERPLAVKTLIVPTSEYADGRNVILTTGHSVYTIALRHLVEQRAEWSWAAFQIIDKKPTDI

Ga0208146_1035537

Ga0208146_10355371

F072876

YTCMEMSKQSYDDVIQMPVQRFYNYLKWKSNLEEEKKKMLAENIISGLGGAM

Ga0208146_1037119

Ga0208146_10371192

F086800

MLRRTPLRRTGRKADPVTSDVRFAVLERDRGCVAVTLGEDPADCRGRLTLDHVKDQPRMGKRAPSDARHLATVCEFHHLDGWATSHRPELRAYLEATR

Ga0208146_1037635

Ga0208146_10376351

F000769

EVNPLLAGIMWLERPQVMLFREGIQVRADSFKGDRPDCPRGCSGRLHRYGFYWRFCKPTGAERFRVQRFLCGSCGHTVSVLPGTRLTYRPLEVGRLEGFFDTQAGIRTGLDPPPGLVEAGCLQRAWNRLLTRVPILKHAFGQLLPSKLHTAQQLWKALRRGMGSAEE

Ga0208146_1038033

Ga0208146_10380331

F056752

YQWTSVDLDGDGIADDEIYFDCSASPSSLYHLVPQMLQNNWSKTMREGYAGKNPFKETAPFVELVTDMDTCWFLDRLGGQQGVGAGNTPNVNANWRFTQWGDQSAYWRYGFSGQIGNYLTRVDELGLRFNYVADLGAAANGGNGNRYRYQIVLPYTNGTTTGAGGAA

Ga0208146_1038219

Ga0208146_10382192

F105452

MTPSIRPWQRAGVVIIGSAVLAGCQLGPRPVHDNWALPRGEWRIVAHSAPGIAAMSPVEAAGYVGGTISYGTDSVASGSDRCAKPVYLANLVYAERYLYRQYGLRTANLGLYRHQDVRVTEVFCAGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026064: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences