Metagenome Family F070270

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070270
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	42 residues
Representative Sequence	FTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRAALKL
Number of Associated Samples	87
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	98.37 %
% of genes from short scaffolds (< 2000 bps)	95.12 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.122 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (21.951 % of family members)
Environment Ontology (ENVO)	Unclassified (32.520 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (34.146 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.71% β-sheet: 0.00% Coil/Unstructured: 60.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04461	DUF520	13.82
PF00578	AhpC-TSA	5.69
PF08534	Redoxin	4.07
PF00106	adh_short	2.44
PF11075	DUF2780	2.44
PF07883	Cupin_2	0.81
PF02627	CMD	0.81
PF01769	MgtE	0.81
PF03982	DAGAT	0.81
PF07715	Plug	0.81
PF00392	GntR	0.81
PF00498	FHA	0.81
PF01425	Amidase	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	13.82
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.81
COG1824	Permease, similar to cation transporters	Inorganic ion transport and metabolism [P]	0.81
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.81
COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.12 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.30 %
Unclassified	root	N/A	4.88 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	27.64 %
Unclassified	root	N/A	4.88 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	2.44 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	19.51 %
Unclassified	root	N/A	4.88 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	2.44 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.44 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	19.51 %
Unclassified	root	N/A	4.88 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	2.44 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.44 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	19.51 %
Unclassified	root	N/A	4.88 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	2.44 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.44 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	19.51 %
Unclassified	root	N/A	4.88 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2.44 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.44 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17228840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1131	Open in IMG/M
3300000241\|BS_KBA_SWE21_205mDRAFT_10076034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	743	Open in IMG/M
3300003861\|Ga0031654_10135719	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300004013\|Ga0055465_10318349	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300004073\|Ga0055516_10089735	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300004114\|Ga0062593_102027866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	640	Open in IMG/M
3300005353\|Ga0070669_100176332	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300005660\|Ga0073904_10237742	All Organisms → cellular organisms → Bacteria → Proteobacteria	1052	Open in IMG/M
3300005718\|Ga0068866_10906827	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300005844\|Ga0068862_100756465	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300005956\|Ga0073920_1035090	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006224\|Ga0079037_100495309	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300006224\|Ga0079037_101219145	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300006224\|Ga0079037_101983902	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300006845\|Ga0075421_101278846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	813	Open in IMG/M
3300006846\|Ga0075430_100584432	Not Available	921	Open in IMG/M
3300006847\|Ga0075431_100459827	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300006930\|Ga0079303_10213283	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300006969\|Ga0075419_10869733	Not Available	649	Open in IMG/M
3300009075\|Ga0105090_10892031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	541	Open in IMG/M
3300009078\|Ga0105106_11288867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	518	Open in IMG/M
3300009081\|Ga0105098_10602976	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300009081\|Ga0105098_10752283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	522	Open in IMG/M
3300009082\|Ga0105099_10378916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	841	Open in IMG/M
3300009085\|Ga0105103_10935154	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	510	Open in IMG/M
3300009091\|Ga0102851_10550255	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300009091\|Ga0102851_10635039	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300009091\|Ga0102851_10879751	All Organisms → cellular organisms → Bacteria → Proteobacteria	965	Open in IMG/M
3300009091\|Ga0102851_10932437	All Organisms → cellular organisms → Bacteria → Proteobacteria	939	Open in IMG/M
3300009091\|Ga0102851_11895290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300009091\|Ga0102851_13231823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	523	Open in IMG/M
3300009111\|Ga0115026_10037155	All Organisms → cellular organisms → Bacteria → Proteobacteria	2576	Open in IMG/M
3300009111\|Ga0115026_10140796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1539	Open in IMG/M
3300009111\|Ga0115026_11052153	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300009167\|Ga0113563_12177700	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300009169\|Ga0105097_10055423	All Organisms → cellular organisms → Bacteria	2138	Open in IMG/M
3300009169\|Ga0105097_10065781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1963	Open in IMG/M
3300009169\|Ga0105097_10085027	All Organisms → cellular organisms → Bacteria	1722	Open in IMG/M
3300009169\|Ga0105097_10231350	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300009169\|Ga0105097_10810195	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300009170\|Ga0105096_10195119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1023	Open in IMG/M
3300009179\|Ga0115028_10139886	All Organisms → cellular organisms → Bacteria → Proteobacteria	1448	Open in IMG/M
3300009179\|Ga0115028_10251793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1155	Open in IMG/M
3300009455\|Ga0114939_10228954	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300009455\|Ga0114939_10229207	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300009509\|Ga0123573_10703248	All Organisms → cellular organisms → Bacteria → Proteobacteria	950	Open in IMG/M
3300009527\|Ga0114942_1098637	All Organisms → cellular organisms → Bacteria → Proteobacteria	964	Open in IMG/M
3300014260\|Ga0075307_1008637	All Organisms → cellular organisms → Bacteria → Proteobacteria	1678	Open in IMG/M
3300014305\|Ga0075349_1150712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	545	Open in IMG/M
3300014306\|Ga0075346_1050044	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300020048\|Ga0207193_1735693	Not Available	646	Open in IMG/M
3300021081\|Ga0210379_10436007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	580	Open in IMG/M
3300022204\|Ga0224496_10463536	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300022213\|Ga0224500_10085009	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300022309\|Ga0224510_10222922	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300024979\|Ga0208115_1074650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	512	Open in IMG/M
3300025130\|Ga0209594_1212194	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300025539\|Ga0210109_1060521	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300025932\|Ga0207690_11739894	Not Available	521	Open in IMG/M
3300025953\|Ga0210068_1020090	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300026026\|Ga0210129_1025577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	990	Open in IMG/M
3300026064\|Ga0208146_1027838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	574	Open in IMG/M
3300026088\|Ga0207641_12120815	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	563	Open in IMG/M
3300026118\|Ga0207675_101443827	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300026121\|Ga0207683_10191458	All Organisms → cellular organisms → Bacteria → Proteobacteria	1857	Open in IMG/M
3300026357\|Ga0256810_1007186	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300027543\|Ga0209999_1043615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	842	Open in IMG/M
3300027552\|Ga0209982_1015764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1148	Open in IMG/M
3300027683\|Ga0209392_1096360	All Organisms → cellular organisms → Bacteria → Proteobacteria	944	Open in IMG/M
3300027693\|Ga0209704_1128541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	729	Open in IMG/M
3300027694\|Ga0209170_1168689	Not Available	758	Open in IMG/M
3300027721\|Ga0209492_1053263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1427	Open in IMG/M
3300027805\|Ga0209229_10426812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	573	Open in IMG/M
3300027818\|Ga0209706_10211357	All Organisms → cellular organisms → Bacteria → Proteobacteria	939	Open in IMG/M
3300027841\|Ga0209262_10316926	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300027877\|Ga0209293_10266409	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300027877\|Ga0209293_10309471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	803	Open in IMG/M
3300027885\|Ga0209450_10352690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300027899\|Ga0209668_10042741	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300027899\|Ga0209668_10229899	All Organisms → cellular organisms → Bacteria → Proteobacteria	1167	Open in IMG/M
3300027899\|Ga0209668_10463142	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300027956\|Ga0209820_1067125	All Organisms → cellular organisms → Bacteria → Proteobacteria	958	Open in IMG/M
3300031665\|Ga0316575_10016832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2771	Open in IMG/M
3300031911\|Ga0307412_10930278	Not Available	764	Open in IMG/M
3300032164\|Ga0315283_10105709	All Organisms → cellular organisms → Bacteria → Proteobacteria	2951	Open in IMG/M
3300032177\|Ga0315276_10367177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1538	Open in IMG/M
3300032256\|Ga0315271_10273428	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300032397\|Ga0315287_10787747	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300032516\|Ga0315273_10078067	All Organisms → cellular organisms → Bacteria → Proteobacteria	4504	Open in IMG/M
3300032516\|Ga0315273_11154759	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300032516\|Ga0315273_13061698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	521	Open in IMG/M
3300033406\|Ga0316604_10721766	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300033408\|Ga0316605_11066912	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300033408\|Ga0316605_11648499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	623	Open in IMG/M
3300033413\|Ga0316603_12323317	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300033413\|Ga0316603_12343196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	503	Open in IMG/M
3300033416\|Ga0316622_101986510	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300033419\|Ga0316601_100235866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1633	Open in IMG/M
3300033419\|Ga0316601_100460971	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300033419\|Ga0316601_101132585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	784	Open in IMG/M
3300033419\|Ga0316601_101643522	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300033419\|Ga0316601_102621610	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	506	Open in IMG/M
3300033434\|Ga0316613_10797478	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300033434\|Ga0316613_10802683	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300033481\|Ga0316600_10437419	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300033481\|Ga0316600_10987744	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300033482\|Ga0316627_100418273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1158	Open in IMG/M
3300033482\|Ga0316627_102946639	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300033485\|Ga0316626_10496058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1038	Open in IMG/M
3300033485\|Ga0316626_10632612	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300033485\|Ga0316626_11190446	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300033485\|Ga0316626_11284680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	656	Open in IMG/M
3300033487\|Ga0316630_11528407	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300033488\|Ga0316621_11209802	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300033493\|Ga0316631_10471751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	526	Open in IMG/M
3300033521\|Ga0316616_100479583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1415	Open in IMG/M
3300033557\|Ga0316617_100425599	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300033557\|Ga0316617_102264065	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300034054\|Ga0373891_082200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	537	Open in IMG/M
3300034055\|Ga0373892_019942	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300034055\|Ga0373892_041774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300034055\|Ga0373892_043409	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300034075\|Ga0373895_056827	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.11%
Host-Associated	Host-Associated	12.20%
Engineered	Engineered	5.69%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	53.66%
Terrestrial	Environmental → Terrestrial	28.46%
Plants	Host-Associated → Plants	12.20%
Bioremediation	Engineered → Bioremediation	4.06%
Wastewater	Engineered → Wastewater	1.63%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	45.53%
Soil	Environmental → Terrestrial → Soil	27.64%
Marine	Environmental → Aquatic → Marine	7.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.69%
Metal	Engineered → Bioremediation → Metal	4.06%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.63%
Sediment	Environmental → Aquatic → Sediment	0.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.81%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.20%
Sediment	Environmental → Aquatic → Freshwater → Sediment	21.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.94%
Lake	Environmental → Aquatic → Freshwater → Lake	6.50%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.88%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	4.06%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.25%
Sediment	Environmental → Aquatic → Marine → Sediment	2.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.63%
Pond	Environmental → Aquatic → Freshwater → Pond	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	25.20%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	21.14%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.13%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.88%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.06%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.06%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.81%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	21.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	13.82%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	8.13%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	5.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.69%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.06%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.06%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	4.06%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	3.25%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.25%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.44%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.63%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater	0.81%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.81%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.81%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.81%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000241	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004073	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005660	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate	Engineered	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005956	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009455	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300009527	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek	Environmental	Open in IMG/M
3300014260	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014305	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1	Environmental	Open in IMG/M
3300014306	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300024979	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 4_LOW4 (SPAdes)	Environmental	Open in IMG/M
3300025130	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)	Environmental	Open in IMG/M
3300025539	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026064	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026357	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU5	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027694	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_bulk (SPAdes)	Engineered	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300031665	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034054	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.1	Engineered	Open in IMG/M
3300034055	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.2	Engineered	Open in IMG/M
3300034075	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00729250	2088090014	Soil	GLAAAFAALGVDMSTAKKFGPIVIDYVREHGGEDLVEKMRVALKV
BS_KBA_SWE21_205mDRAFT_100760342	3300000241	Marine	WAGLAASFTELGIPIDTARKFGPIVIDYVEHHGGEDLVDKIKDALGL*
Ga0031654_101357192	3300003861	Freshwater Lake Sediment	WAGLAASFTELGVDIDTAKKFGPIVIEYVRKHGGENLVDKMRTALRI*
Ga0055465_103183491	3300004013	Natural And Restored Wetlands	WAGLAASFTELGVDMDTAKKFGPIVMEHVRKHGGEDLLGKLKGALKL*
Ga0055516_100897351	3300004073	Natural And Restored Wetlands	PGRWAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL*
Ga0062593_1020278661	3300004114	Soil	ASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL*
Ga0070669_1001763323	3300005353	Switchgrass Rhizosphere	GLAASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0073904_102377421	3300005660	Activated Sludge	AELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNV*
Ga0068866_109068272	3300005718	Miscanthus Rhizosphere	DLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL*
Ga0068862_1007564651	3300005844	Switchgrass Rhizosphere	GRWAGLAASFSELGMDLTTAKKFGPIVIDYVREQGGAELVAKLKTALKL*
Ga0073920_10350901	3300005956	Sand	GRWAGLAASFAELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI*
Ga0079037_1004953091	3300006224	Freshwater Wetlands	SFTELGVDLDTARKFGPIVIDYVAHHGGENLVQKMRTALKL*
Ga0079037_1012191452	3300006224	Freshwater Wetlands	LAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI*
Ga0079037_1019839021	3300006224	Freshwater Wetlands	ASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKL*
Ga0075421_1012788461	3300006845	Populus Rhizosphere	LGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0075430_1005844322	3300006846	Populus Rhizosphere	AELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0075431_1004598271	3300006847	Populus Rhizosphere	SFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0079303_102132831	3300006930	Deep Subsurface	LGVDIPTAKKFGPIVIDYVAEHGGEDLVDKIREALKI*
Ga0075419_108697332	3300006969	Populus Rhizosphere	VDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL*
Ga0105090_108920312	3300009075	Freshwater Sediment	PGRWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRSALKL*
Ga0105106_112888672	3300009078	Freshwater Sediment	VDIDTAKKFGPIIIEHVRQHGGEDLVEKIRVALKV*
Ga0105098_106029761	3300009081	Freshwater Sediment	LGVDLDTAKKFGPIVIDYVKHHGGEEIVDKMKFALKI*
Ga0105098_107522831	3300009081	Freshwater Sediment	GVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKAALKL*
Ga0105099_103789162	3300009082	Freshwater Sediment	VDINTAKKFGPIIIEHVRQHGGEDLVEKIRVALKI*
Ga0105103_109351541	3300009085	Freshwater Sediment	IDLDTAKKFGPIVIDYVRHHGGENLVGKMRTALKL*
Ga0102851_105502551	3300009091	Freshwater Wetlands	GLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRSALKL*
Ga0102851_106350392	3300009091	Freshwater Wetlands	GVDLDTAKKFGPIVIDYVRQHGGEDLVDEIRTALRI*
Ga0102851_108797512	3300009091	Freshwater Wetlands	FAELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI*
Ga0102851_109324372	3300009091	Freshwater Wetlands	FTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI*
Ga0102851_118952903	3300009091	Freshwater Wetlands	ELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKL*
Ga0102851_132318231	3300009091	Freshwater Wetlands	AASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL*
Ga0115026_100371553	3300009111	Wetland	WAGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVDKIRAALNI*
Ga0115026_101407962	3300009111	Wetland	ELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI*
Ga0115026_110521531	3300009111	Wetland	LGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL*
Ga0113563_121777002	3300009167	Freshwater Wetlands	GIDLKTAKKFGPIVIDYVAHHGGEDLVDKIKVALKL*
Ga0105097_100554231	3300009169	Freshwater Sediment	RWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNVNV*
Ga0105097_100657812	3300009169	Freshwater Sediment	VDLGTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL*
Ga0105097_100850271	3300009169	Freshwater Sediment	AGLAASFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRTALKL*
Ga0105097_102313502	3300009169	Freshwater Sediment	AAAVTELGVDLDTAKKFGPIVIDFVSHHGGEDIVDKMKSALKI*
Ga0105097_108101952	3300009169	Freshwater Sediment	GRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEEIVDKMKVALKI*
Ga0105096_101951191	3300009170	Freshwater Sediment	AGRWAGLAASFTELGVDLNTAKKFGPIIIEHVRQHGGEDLVDKIKVALRI*
Ga0115028_101398861	3300009179	Wetland	LAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALRI*
Ga0115028_102517932	3300009179	Wetland	GLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL*
Ga0114939_102289541	3300009455	Groundwater	GLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL*
Ga0114939_102292071	3300009455	Groundwater	GLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALRL*
Ga0123573_107032481	3300009509	Mangrove Sediment	SFTEIGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKAALKI*
Ga0114942_10986371	3300009527	Groundwater	LAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALKV*
Ga0075307_10086371	3300014260	Natural And Restored Wetlands	PIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALGL*
Ga0075349_11507122	3300014305	Natural And Restored Wetlands	SFTELGIPISTAKKFGPIVIDYVEHHGGEDLVDKIKDALGLQA*
Ga0075346_10500441	3300014306	Natural And Restored Wetlands	FTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKV*
Ga0207193_17356932	3300020048	Freshwater Lake Sediment	XXXLKTAKKFGPIVIDYVAHHGGEDLVDKIKVALKL
Ga0210379_104360072	3300021081	Groundwater Sediment	TFTELGVDLDTAKKFGPIVMEHVREHGGEDLLDKLKVALKL
Ga0224496_104635361	3300022204	Sediment	WAGLAASFTELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL
Ga0224500_100850092	3300022213	Sediment	WAVLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVEKIRVALKV
Ga0224510_102229221	3300022309	Sediment	LAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVEKIRVALKV
Ga0208115_10746501	3300024979	Freshwater	GIPIATAKKFGPIVIDYVGHHGGEDLVDKIKEALGL
Ga0209594_12121941	3300025130	Groundwater	FTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRAALKL
Ga0210109_10605211	3300025539	Natural And Restored Wetlands	GVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL
Ga0207690_117398942	3300025932	Corn Rhizosphere	AASFAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0210068_10200902	3300025953	Natural And Restored Wetlands	LGVDLDTAKKFGPIVIDYVKHHGGENLVGKMRAALKL
Ga0210129_10255771	3300026026	Natural And Restored Wetlands	SFTELGIPIDTAKKFGPIVIDYVEHHGGEDLVDKIKDALGL
Ga0208146_10278382	3300026064	Natural And Restored Wetlands	SFTELGVDLDTAKKFGPIVIDYVAHHGGEDLVDKIRSALKI
Ga0207641_121208152	3300026088	Switchgrass Rhizosphere	FTELGVDLATAKKFRPIVIDYVRTHGGEDLVDKIRTALKL
Ga0207675_1014438272	3300026118	Switchgrass Rhizosphere	AGRWAGLAASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0207683_101914584	3300026121	Miscanthus Rhizosphere	AASFSELGVDLTTAKKFGPIVIDYVREHGGADLVTKMKTALKL
Ga0256810_10071863	3300026357	Sediment	SPGRWAGLAASFTELGVPIETAKKFGPIVIDYVAEHGGEDLVDKIRAALKI
Ga0209999_10436152	3300027543	Arabidopsis Thaliana Rhizosphere	VDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0209982_10157643	3300027552	Arabidopsis Thaliana Rhizosphere	ELAEQVAELGVDVETAKKFGPIVMEHVRKHGGEELLGKLKGALKL
Ga0209392_10963601	3300027683	Freshwater Sediment	AGLAASFTELGVDLSTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL
Ga0209704_11285412	3300027693	Freshwater Sediment	VDINTAKKFGPIIIEHVRQHGGEDLVEKIRVALKV
Ga0209170_11686892	3300027694	Activated Sludge	RWAGLAASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNV
Ga0209492_10532631	3300027721	Freshwater Sediment	SFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRSALKI
Ga0209229_104268122	3300027805	Freshwater And Sediment	SFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALNVNV
Ga0209706_102113572	3300027818	Freshwater Sediment	SFTELGVDLDTAKKFGPIVIDFVSHHGGEDIVDKMKSALKI
Ga0209262_103169261	3300027841	Freshwater	PGRWAGLAASFAELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI
Ga0209293_102664091	3300027877	Wetland	SPGRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKI
Ga0209293_103094711	3300027877	Wetland	ELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI
Ga0209450_103526902	3300027885	Freshwater Lake Sediment	RWAGLAASFTELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0209668_100427411	3300027899	Freshwater Lake Sediment	GRWAGLAATFTELGVDLDTARKFGPIVIDFMKEHGGENLVDKVRTALKV
Ga0209668_102298991	3300027899	Freshwater Lake Sediment	SPGRWAGLAASFAELGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI
Ga0209668_104631422	3300027899	Freshwater Lake Sediment	TELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0209820_10671252	3300027956	Freshwater Sediment	GRWAGLAASFAELGVDLDTAKKFGPIVIDYVKHHGGEDIVDKMKVALKL
Ga0316575_100168323	3300031665	Rhizosphere	FSELGIDLATAKKFGPIVIDYVEHHGGEEIVDKMKVALKL
Ga0307412_109302781	3300031911	Rhizosphere	ASFYELGIDLQTARQFGPIVIDYVREHGGTDLVDKLRAALKP
Ga0315283_101057094	3300032164	Sediment	AASFAELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALRI
Ga0315276_103671773	3300032177	Sediment	GLAASFTELGIPLDTAKKFGPIVIDYVAHHGGEDLVDKIKYALGL
Ga0315271_102734281	3300032256	Sediment	GVDLDTAKKFGPIVIDFMKEHGGENLVDKVRVALKV
Ga0315287_107877474	3300032397	Sediment	WAGLAASFTELGIPLDTAKKFGPIVIDYVAHHGGEDLVDKIKDALGL
Ga0315273_100780675	3300032516	Sediment	AASFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALKI
Ga0315273_111547592	3300032516	Sediment	PGRWAGLAASFAELGVDIPTAKKFGPIVIDYVAEHGGEDLVDKIRDALKI
Ga0315273_130616982	3300032516	Sediment	GRWAGLAAAFAELGVDIDTAKKFGPIVIEHVREHGGEDLVDKIRVALKV
Ga0316604_107217661	3300033406	Soil	TELGVDLDTAKKFGPIVIDYVRQHGGEDLVDEIRTALKI
Ga0316605_110669122	3300033408	Soil	VDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316605_116484992	3300033408	Soil	AGLAASFTELGVDIETAKKFGPIVIDYVRHHGGENLVKQMRAALKL
Ga0316603_123233172	3300033413	Soil	SFTELGVDIDTAKKFGPIVIDYVRHHGGENLVKQMRAALKL
Ga0316603_123431962	3300033413	Soil	ASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0316622_1019865101	3300033416	Soil	AGLAASFTELGVDLNTAKKFGPIIIEHVRQHGGEDLVDKIKVALRI
Ga0316601_1002358663	3300033419	Soil	GRWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316601_1004609712	3300033419	Soil	ELGIDLDTAKKFGPIVIDYVRHHGGENLVGKMRAALKL
Ga0316601_1011325852	3300033419	Soil	ELGVDVDTAKKFGPIVIEYVREHGGENLVEKIRAALKL
Ga0316601_1016435222	3300033419	Soil	GVDLETARKFGPIVIEYVRQHGGEDLVEKMRVALKV
Ga0316601_1026216102	3300033419	Soil	AGLAASFTELGVDLDTAKKFGPIVIDYVRHHGGEDLVDEIRTALKI
Ga0316613_107974781	3300033434	Soil	GLAASFTELGVDLTTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0316613_108026831	3300033434	Soil	LGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316600_104374191	3300033481	Soil	VDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI
Ga0316600_109877441	3300033481	Soil	FTELGVDLNTAKKFGPIVIDYVKHHGGEDLVDKMKVALKL
Ga0316627_1004182733	3300033482	Soil	FTELGVDLDTARKFGPIVIDYVAHHGGENLVQKMRTALKL
Ga0316627_1029466392	3300033482	Soil	SFTELGVDLDTAKKFGPIVIEYVKQHGGEDLVDEIRTALKI
Ga0316626_104960581	3300033485	Soil	GLAASFTELGVDLDTARKFGPIVIDYVAHHGGENLVQKMRTALKL
Ga0316626_106326121	3300033485	Soil	GVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316626_111904462	3300033485	Soil	FTELGVDLDTAKKFGPIVIDYVKQHGGEGLVDEIRTALKI
Ga0316626_112846801	3300033485	Soil	AELGVDIDTAKKFGPIVIEHVRQHGGEDLVDKIRVALKV
Ga0316630_115284071	3300033487	Soil	GVDLDTARQFGPIVIDYVKHHGGEDIVDKMKAALKI
Ga0316621_112098022	3300033488	Soil	VDLDTAKKFGPIVIDYVRHHGGENLVDKMRTALKL
Ga0316631_104717512	3300033493	Soil	WASLAASFTELGVDIDTAKKFGPIVIDYVKHHGGEDIVDKMKAALKI
Ga0316616_1004795831	3300033521	Soil	SFTELGVDLDTARKFGPIVIDYVAHHGGENLVQKMRTALKL
Ga0316617_1004255992	3300033557	Soil	RWAGLAASFTELGVDLDTAKKFGPIVIDYVEHHGGEGIVDQIKAALKI
Ga0316617_1022640652	3300033557	Soil	PGRWAGLAASFTELGIDLKTAKKFGPIVIDYVAHHGGEDLVDKIKVALKL
Ga0373891_082200_379_537	3300034054	Sediment Slurry	NSPVRWAGLAASFTELGVDLSTAKKFGPIVIDYVAHHGGEDLVEKMKAALKL
Ga0373892_019942_673_822	3300034055	Sediment Slurry	GRWAGLAASFTELGVDLKTAKKFGPIVIDYVAHHGGEDLVDKIKAALKL
Ga0373892_041774_460_603	3300034055	Sediment Slurry	WAGLAASFTELGVDLDTARKFGPIVIEHVRQHGGEDLVEKIKVALKI
Ga0373892_043409_2_115	3300034055	Sediment Slurry	LGVDIPTAKKFGPIVIDYVAEHGGEDLVEKIRDALKI
Ga0373895_056827_1_138	3300034075	Sediment Slurry	GLAASFTELGVDLTPAKKFGPIVIDYVAHHGGEDLVDKIKAALKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F070270

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences