Sample 3300025863

Overview

Basic Information
IMG/M Taxon OID	3300025863 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054431 \| Ga0208833
Sample Name	Marine microbial communities from the Deep Pacific Ocean - MP1788 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	143873797
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	9.22	Long. (^o)	-163.53	Alt. (m)	N/A	Depth (m)	3818.06
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F006551	Metagenome / Metatranscriptome	370	Y
F007647	Metagenome / Metatranscriptome	347	Y
F008755	Metagenome / Metatranscriptome	328	Y
F021319	Metagenome	219	N
F032684	Metagenome / Metatranscriptome	179	Y
F037770	Metagenome	167	Y
F049927	Metagenome	146	Y
F061265	Metagenome / Metatranscriptome	132	Y
F063069	Metagenome	130	Y
F071320	Metagenome / Metatranscriptome	122	N
F082562	Metagenome	113	N
F084703	Metagenome / Metatranscriptome	112	Y
F089571	Metagenome	109	N
F090504	Metagenome	108	N
F092695	Metagenome / Metatranscriptome	107	N
F095618	Metagenome / Metatranscriptome	105	Y
F095626	Metagenome / Metatranscriptome	105	N

Family

Category

Number of Sequences

3D Structure?

F002753

Metagenome / Metatranscriptome

532

F006551

Metagenome / Metatranscriptome

370

F007647

Metagenome / Metatranscriptome

347

F008755

Metagenome / Metatranscriptome

328

F021319

Metagenome

219

F032684

Metagenome / Metatranscriptome

179

F037770

Metagenome

167

F049927

Metagenome

146

F061265

Metagenome / Metatranscriptome

132

F063069

Metagenome

130

F071320

Metagenome / Metatranscriptome

122

F082562

Metagenome

113

F084703

Metagenome / Metatranscriptome

112

F089571

Metagenome

109

F090504

Metagenome

108

F092695

Metagenome / Metatranscriptome

107

F095618

Metagenome / Metatranscriptome

105

F095626

Metagenome / Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208833_1004258	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	3372	Open in IMG/M
Ga0208833_1004946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3095	Open in IMG/M
Ga0208833_1009871	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2033	Open in IMG/M
Ga0208833_1011854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1811	Open in IMG/M
Ga0208833_1019755	Not Available	1300	Open in IMG/M
Ga0208833_1020826	Not Available	1252	Open in IMG/M
Ga0208833_1023487	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1156	Open in IMG/M
Ga0208833_1025645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1089	Open in IMG/M
Ga0208833_1026219	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
Ga0208833_1032277	Not Available	933	Open in IMG/M
Ga0208833_1033363	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	912	Open in IMG/M
Ga0208833_1040290	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	801	Open in IMG/M
Ga0208833_1051812	Not Available	674	Open in IMG/M
Ga0208833_1062091	Not Available	593	Open in IMG/M
Ga0208833_1063481	Not Available	584	Open in IMG/M
Ga0208833_1064478	Not Available	577	Open in IMG/M
Ga0208833_1065919	Not Available	568	Open in IMG/M
Ga0208833_1074654	Not Available	518	Open in IMG/M
Ga0208833_1074807	Not Available	517	Open in IMG/M
Ga0208833_1077991	Not Available	502	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208833_1004258

All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix

3372

Open in IMG/M

Ga0208833_1004946

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

3095

Open in IMG/M

Ga0208833_1009871

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

2033

Open in IMG/M

Ga0208833_1011854

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

1811

Open in IMG/M

Ga0208833_1019755

Not Available

1300

Open in IMG/M

Ga0208833_1020826

Not Available

1252

Open in IMG/M

Ga0208833_1023487

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

1156

Open in IMG/M

Ga0208833_1025645

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter

1089

Open in IMG/M

Ga0208833_1026219

All Organisms → cellular organisms → Bacteria → Proteobacteria

1072

Open in IMG/M

Ga0208833_1032277

Not Available

933

Open in IMG/M

Ga0208833_1033363

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

912

Open in IMG/M

Ga0208833_1040290

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales

801

Open in IMG/M

Ga0208833_1051812

Not Available

674

Open in IMG/M

Ga0208833_1062091

Not Available

593

Open in IMG/M

Ga0208833_1063481

Not Available

584

Open in IMG/M

Ga0208833_1064478

Not Available

577

Open in IMG/M

Ga0208833_1065919

Not Available

568

Open in IMG/M

Ga0208833_1074654

Not Available

518

Open in IMG/M

Ga0208833_1074807

Not Available

517

Open in IMG/M

Ga0208833_1077991

Not Available

502

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208833_1004258	Ga0208833_10042582	F089571	MFIIYLDKENERKMLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208833_1004946	Ga0208833_10049466	F090504	MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKKK
Ga0208833_1009871	Ga0208833_10098711	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDV
Ga0208833_1011854	Ga0208833_10118541	F063069	ILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL
Ga0208833_1019755	Ga0208833_10197552	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSRCFRNNP
Ga0208833_1020826	Ga0208833_10208261	F095618	TFRKPGILLRTFSHRATTFRPNILVTITPVMSMINSTKIIPEPGIVVSKLNIDSGRYFCGIKLSISSKKNLITMTLKDRGIQKRRPEIK
Ga0208833_1023487	Ga0208833_10234871	F082562	VIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI
Ga0208833_1025645	Ga0208833_10256453	F049927	KIAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT
Ga0208833_1026219	Ga0208833_10262192	F071320	VSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSSSSRNNPDRLYCSSDCRS
Ga0208833_1032277	Ga0208833_10322771	F095626	DLNMDLQRRLKRLRCTAFPYFLDTISPISGLELLLYLNDKSLKYRDFEAFIILENADEESECFN
Ga0208833_1033363	Ga0208833_10333631	F089571	EKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN
Ga0208833_1038409	Ga0208833_10384091	F092695	GGYDGGKYIKKVNNFAITCKYWWRGKDLNLRPSGYEFYVPPYYWLISTYIN
Ga0208833_1040290	Ga0208833_10402901	F021319	VGAARFIEIPSATTINGTKISPPPTPKRLDIIPAKKLAPAEKTSKIRDVSKGFLSIFLFRKMYDADDKRTSANKILKISGERSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG
Ga0208833_1051812	Ga0208833_10518121	F061265	IQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0208833_1062091	Ga0208833_10620911	F032684	MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITAP
Ga0208833_1063481	Ga0208833_10634811	F084703	FCDAVEVLPSSLPRELFSTTAPRFLPDKLEPLGLSLSGQLRVAS
Ga0208833_1064478	Ga0208833_10644781	F006551	LGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFR
Ga0208833_1065919	Ga0208833_10659192	F037770	ASRPLAFNTDTMVDLPEPGMPVRQTISFAKMKLFTDSSL
Ga0208833_1074654	Ga0208833_10746541	F007647	VVNAFFDSLKSKEDKILDTGLTHNTTVDLLHQATLQLCQDNPKRFEQYVKFFEFSCMYLQDESDEIPEVEKIER
Ga0208833_1074807	Ga0208833_10748071	F008755	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPMMDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFE
Ga0208833_1077991	Ga0208833_10779911	F002753	VFEIESVKLTVSDRFTPAVFDIESVKLTDSDRFTPAALDVSSVNDIDSDRFTPAALDVSSARLTDSDRFTPAALDVSSVNDTDSVRFTPAAFDVSSVNDIDSDRFTPAVFEIESVNDTDSVRFTPATFDIESVKLTDSDRFTPAAFEIESVKLTDSDRFTPAALDVS

Scaffold ID

Protein ID

Family

Sequence

Ga0208833_1004258

Ga0208833_10042582

F089571

MFIIYLDKENERKMLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE

Ga0208833_1004946

Ga0208833_10049466

F090504

MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKKK

Ga0208833_1009871

Ga0208833_10098711

F082562

MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDV

Ga0208833_1011854

Ga0208833_10118541

F063069

ILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL

Ga0208833_1019755

Ga0208833_10197552

F071320

VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSRCFRNNP

Ga0208833_1020826

Ga0208833_10208261

F095618

TFRKPGILLRTFSHRATTFRPNILVTITPVMSMINSTKIIPEPGIVVSKLNIDSGRYFCGIKLSISSKKNLITMTLKDRGIQKRRPEIK

Ga0208833_1023487

Ga0208833_10234871

F082562

VIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI

Ga0208833_1025645

Ga0208833_10256453

F049927

KIAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT

Ga0208833_1026219

Ga0208833_10262192

F071320

VSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSSSSRNNPDRLYCSSDCRS

Ga0208833_1032277

Ga0208833_10322771

F095626

DLNMDLQRRLKRLRCTAFPYFLDTISPISGLELLLYLNDKSLKYRDFEAFIILENADEESECFN

Ga0208833_1033363

Ga0208833_10333631

F089571

EKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEYDNLLNHIDKLEGYGPIKISYDMGNGIIESITFEEIWLKINPYNGDPAHLLRKINLLKN

Ga0208833_1038409

Ga0208833_10384091

F092695

GGYDGGKYIKKVNNFAITCKYWWRGKDLNLRPSGYEFYVPPYYWLISTYIN

Ga0208833_1040290

Ga0208833_10402901

F021319

VGAARFIEIPSATTINGTKISPPPTPKRLDIIPAKKLAPAEKTSKIRDVSKGFLSIFLFRKMYDADDKRTSANKILKISGERSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG

Ga0208833_1051812

Ga0208833_10518121

F061265

IQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK

Ga0208833_1062091

Ga0208833_10620911

F032684

MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITAP

Ga0208833_1063481

Ga0208833_10634811

F084703

FCDAVEVLPSSLPRELFSTTAPRFLPDKLEPLGLSLSGQLRVAS

Ga0208833_1064478

Ga0208833_10644781

F006551

LGGSGSGHYDPWAANATIDRDSGTAFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFR

Ga0208833_1065919

Ga0208833_10659192

F037770

ASRPLAFNTDTMVDLPEPGMPVRQTISFAKMKLFTDSSL

Ga0208833_1074654

Ga0208833_10746541

F007647

VVNAFFDSLKSKEDKILDTGLTHNTTVDLLHQATLQLCQDNPKRFEQYVKFFEFSCMYLQDESDEIPEVEKIER

Ga0208833_1074807

Ga0208833_10748071

F008755

MNKSRVARDLWRKVFNDNLINLSDGDARKQVVREFLADPVNKKAGWKAKDARFMRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMNINVKSKQKNPTPMMDAIKPPTEEEKKFGALPQTPQLVGQQAQAVQYSAQSVGQIFE

Ga0208833_1077991

Ga0208833_10779911

F002753

VFEIESVKLTVSDRFTPAVFDIESVKLTDSDRFTPAALDVSSVNDIDSDRFTPAALDVSSARLTDSDRFTPAALDVSSVNDTDSVRFTPAAFDVSSVNDIDSDRFTPAVFEIESVNDTDSVRFTPATFDIESVKLTDSDRFTPAAFEIESVKLTDSDRFTPAALDVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025863: Marine microbial communities from the Deep Pacific Ocean - MP1788 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences