Metagenome / Metatranscriptome Family F061265

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061265
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	39 residues
Representative Sequence	MSLDWDLIWKILQVVALLIIAREIDKRIRKRKNK
Number of Associated Samples	80
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.79 %
% of genes near scaffold ends (potentially truncated)	42.42 %
% of genes from short scaffolds (< 2000 bps)	88.64 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (44.697 % of family members)
Environment Ontology (ENVO)	Unclassified (73.485 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (89.394 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF02737	3HCDH_N	8.33
PF00596	Aldolase_II	6.82
PF08241	Methyltransf_11	6.06
PF01177	Asp_Glu_race	5.30
PF13450	NAD_binding_8	3.79
PF06249	EutQ	3.03
PF01593	Amino_oxidase	2.27
PF13517	FG-GAP_3	2.27
PF13193	AMP-binding_C	2.27
PF10417	1-cysPrx_C	2.27
PF01027	Bax1-I	1.52
PF05187	ETF_QO	1.52
PF05787	DUF839	1.52
PF11794	HpaB_N	1.52
PF06041	DUF924	1.52
PF14099	Polysacc_lyase	1.52
PF02668	TauD	1.52
PF01738	DLH	1.52
PF00491	Arginase	1.52
PF00923	TAL_FSA	1.52
PF07478	Dala_Dala_lig_C	0.76
PF14342	DUF4396	0.76
PF13649	Methyltransf_25	0.76
PF02230	Abhydrolase_2	0.76
PF13844	Glyco_transf_41	0.76
PF05711	TylF	0.76
PF00291	PALP	0.76
PF07690	MFS_1	0.76
PF04321	RmlD_sub_bind	0.76
PF13438	DUF4113	0.76
PF01474	DAHP_synth_2	0.76
PF12973	Cupin_7	0.76
PF00565	SNase	0.76
PF00331	Glyco_hydro_10	0.76
PF03061	4HBT	0.76
PF02274	ADI	0.76
PF04828	GFA	0.76
PF03741	TerC	0.76
PF13640	2OG-FeII_Oxy_3	0.76
PF04432	FrhB_FdhB_C	0.76
PF02493	MORN	0.76
PF12804	NTP_transf_3	0.76
PF07995	GSDH	0.76
PF11874	DUF3394	0.76
PF00248	Aldo_ket_red	0.76
PF01554	MatE	0.76
PF00924	MS_channel	0.76
PF00535	Glycos_transf_2	0.76
PF13186	SPASM	0.76
PF13759	2OG-FeII_Oxy_5	0.76
PF02602	HEM4	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	8.33
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	8.33
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	8.33
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	8.33
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	8.33
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	8.33
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	8.33
COG4766	Ethanolamine utilization protein EutQ, cupin superfamily (function unknown)	Amino acid transport and metabolism [E]	3.03
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	1.52
COG3803	Uncharacterized conserved protein, DUF924 family	Function unknown [S]	1.52
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	1.52
COG2440	Ferredoxin-like protein FixX	Energy production and conversion [C]	1.52
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.52
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.52
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.52
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.52
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.52
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.52
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	0.76
COG4874	Uncharacterized conserved protein	Function unknown [S]	0.76
COG4642	Uncharacterized conserved protein	Function unknown [S]	0.76
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.76
COG3693	Endo-1,4-beta-xylanase, GH35 family	Carbohydrate transport and metabolism [G]	0.76
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.76
COG3200	3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, class II	Amino acid transport and metabolism [E]	0.76
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	0.76
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.76
COG0861	Tellurite resistance membrane protein TerC	Inorganic ion transport and metabolism [P]	0.76
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	0.76
COG1035	Coenzyme F420-reducing hydrogenase, beta subunit	Energy production and conversion [C]	0.76
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	0.76
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	0.76
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.88 %
Unclassified	root	N/A	37.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.88 %
Unclassified	root	N/A	37.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.88 %
Unclassified	root	N/A	37.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.94 %
Unclassified	root	N/A	37.12 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.76 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.12 %
Unclassified	root	N/A	37.12 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.52 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.12 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	31.06 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.76 %
candidate division CPR2	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.12 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	28.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.76 %
candidate division CPR2 bacterium GW2011_GWC1_41_48	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2 → candidate division CPR2 bacterium GW2011_GWC1_41_48	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.12 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	28.03 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	0.76 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.76 %
candidate division CPR2 bacterium GW2011_GWC1_41_48	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2 → candidate division CPR2 bacterium GW2011_GWC1_41_48	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.12 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	10.61 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	4.55 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %
Pelagibacteraceae bacterium TMED267	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED267	0.76 %
Candidatus Pelagibacter giovannonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	0.76 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.76 %
candidate division CPR2 bacterium GW2011_GWC1_41_48	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2 → candidate division CPR2 bacterium GW2011_GWC1_41_48	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.12 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	10.61 %
Candidatus Pelagibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	4.55 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %
Pelagibacteraceae bacterium TMED267	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED267	0.76 %
Candidatus Pelagibacter giovannonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	0.76 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.76 %
candidate division CPR2 bacterium GW2011_GWC1_41_48	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2 → candidate division CPR2 bacterium GW2011_GWC1_41_48	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002040\|GOScombined01_101706699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	1617	Open in IMG/M
3300005398\|Ga0066858_10223140	Not Available	541	Open in IMG/M
3300005429\|Ga0066846_10127135	Not Available	870	Open in IMG/M
3300005430\|Ga0066849_10163692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	873	Open in IMG/M
3300005514\|Ga0066866_10065324	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300005514\|Ga0066866_10071916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1288	Open in IMG/M
3300005514\|Ga0066866_10094988	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300005514\|Ga0066866_10102397	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300005514\|Ga0066866_10110046	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005514\|Ga0066866_10191234	Not Available	720	Open in IMG/M
3300005514\|Ga0066866_10224203	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300005516\|Ga0066831_10024160	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300005520\|Ga0066864_10086344	All Organisms → cellular organisms → Bacteria → Proteobacteria	918	Open in IMG/M
3300005521\|Ga0066862_10022962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2295	Open in IMG/M
3300005521\|Ga0066862_10060915	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300005521\|Ga0066862_10085564	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300005521\|Ga0066862_10105317	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	962	Open in IMG/M
3300005521\|Ga0066862_10236867	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300005593\|Ga0066837_10249547	Not Available	628	Open in IMG/M
3300005593\|Ga0066837_10359304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	508	Open in IMG/M
3300005599\|Ga0066841_10039974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	748	Open in IMG/M
3300005604\|Ga0066852_10069850	Not Available	1281	Open in IMG/M
3300005605\|Ga0066850_10173044	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300005605\|Ga0066850_10335992	Not Available	529	Open in IMG/M
3300005945\|Ga0066381_10005255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3308	Open in IMG/M
3300005945\|Ga0066381_10070017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	980	Open in IMG/M
3300006011\|Ga0066373_10219881	Not Available	555	Open in IMG/M
3300006166\|Ga0066836_10009201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5406	Open in IMG/M
3300006166\|Ga0066836_10308021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division CPR2 → candidate division CPR2 bacterium GW2011_GWC1_41_48	949	Open in IMG/M
3300006166\|Ga0066836_10369006	Not Available	863	Open in IMG/M
3300006166\|Ga0066836_10385729	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300006166\|Ga0066836_10872127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	543	Open in IMG/M
3300006308\|Ga0068470_1136439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii	1042	Open in IMG/M
3300006308\|Ga0068470_1162205	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300006310\|Ga0068471_1144175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1437	Open in IMG/M
3300006310\|Ga0068471_1356435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1168	Open in IMG/M
3300006310\|Ga0068471_1372402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1009	Open in IMG/M
3300006323\|Ga0068497_1108258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2365	Open in IMG/M
3300006323\|Ga0068497_1133102	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300006327\|Ga0068499_1048823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300006336\|Ga0068502_1354748	Not Available	2056	Open in IMG/M
3300006339\|Ga0068481_1367376	Not Available	1520	Open in IMG/M
3300006339\|Ga0068481_1389000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1606	Open in IMG/M
3300006339\|Ga0068481_1438237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1905	Open in IMG/M
3300006902\|Ga0066372_10302968	Not Available	903	Open in IMG/M
3300006902\|Ga0066372_10335297	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300006902\|Ga0066372_10384084	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300006902\|Ga0066372_10540838	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300006902\|Ga0066372_10831919	Not Available	561	Open in IMG/M
3300006902\|Ga0066372_10882284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	545	Open in IMG/M
3300007283\|Ga0066366_10148014	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300007508\|Ga0105011_1051842	All Organisms → cellular organisms → Bacteria	1872	Open in IMG/M
3300007508\|Ga0105011_1181538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	565	Open in IMG/M
3300007509\|Ga0105012_1041972	All Organisms → cellular organisms → Bacteria	2339	Open in IMG/M
3300007509\|Ga0105012_1085955	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300007509\|Ga0105012_1199009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	614	Open in IMG/M
3300007512\|Ga0105016_1138168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1318	Open in IMG/M
3300007515\|Ga0105021_1130492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1495	Open in IMG/M
3300007515\|Ga0105021_1222805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1009	Open in IMG/M
3300007754\|Ga0105023_1047300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1423	Open in IMG/M
3300007760\|Ga0105018_1134175	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	811	Open in IMG/M
3300008225\|Ga0105352_1020738	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300008226\|Ga0105355_10077170	Not Available	2118	Open in IMG/M
3300008250\|Ga0105354_1312146	Not Available	561	Open in IMG/M
3300008251\|Ga0105359_10556215	Not Available	505	Open in IMG/M
3300008253\|Ga0105349_10213745	Not Available	804	Open in IMG/M
3300008253\|Ga0105349_10251187	Not Available	736	Open in IMG/M
3300008253\|Ga0105349_10335100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED267	629	Open in IMG/M
3300008735\|Ga0115657_1055835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2790	Open in IMG/M
3300008735\|Ga0115657_1056414	All Organisms → cellular organisms → Bacteria → Proteobacteria	2768	Open in IMG/M
3300008735\|Ga0115657_1285341	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300008735\|Ga0115657_1323552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	632	Open in IMG/M
3300008735\|Ga0115657_1344768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	510	Open in IMG/M
3300008740\|Ga0115663_1011433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3509	Open in IMG/M
3300008952\|Ga0115651_1023317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5456	Open in IMG/M
3300008964\|Ga0102889_1242164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300009132\|Ga0118730_1373077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	621	Open in IMG/M
3300009409\|Ga0114993_10721761	Not Available	724	Open in IMG/M
3300009425\|Ga0114997_10128580	Not Available	1518	Open in IMG/M
3300009481\|Ga0114932_10182128	Not Available	1282	Open in IMG/M
3300009593\|Ga0115011_11623292	Not Available	576	Open in IMG/M
3300009703\|Ga0114933_10511543	Not Available	779	Open in IMG/M
3300009786\|Ga0114999_11204671	Not Available	540	Open in IMG/M
3300011329\|Ga0138367_1091262	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012950\|Ga0163108_10225876	Not Available	1202	Open in IMG/M
3300012950\|Ga0163108_10243377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1155	Open in IMG/M
3300012950\|Ga0163108_10842108	Not Available	593	Open in IMG/M
3300012950\|Ga0163108_11013092	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300012954\|Ga0163111_10609033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	1021	Open in IMG/M
3300012954\|Ga0163111_11312819	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300020300\|Ga0211662_1024853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1163	Open in IMG/M
3300020332\|Ga0211502_1024428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1224	Open in IMG/M
3300020338\|Ga0211571_1090804	Not Available	719	Open in IMG/M
3300020373\|Ga0211660_10321101	Not Available	505	Open in IMG/M
3300020457\|Ga0211643_10602884	Not Available	538	Open in IMG/M
3300020477\|Ga0211585_10550568	Not Available	643	Open in IMG/M
3300021065\|Ga0206686_1117765	Not Available	788	Open in IMG/M
3300024348\|Ga0244776_10796407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300025738\|Ga0209292_1294101	Not Available	545	Open in IMG/M
3300025863\|Ga0208833_1051812	Not Available	674	Open in IMG/M
3300026084\|Ga0208881_1015008	All Organisms → cellular organisms → Bacteria → Proteobacteria	2023	Open in IMG/M
3300026200\|Ga0208894_1013741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3177	Open in IMG/M
3300026200\|Ga0208894_1162207	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300026209\|Ga0207989_1058362	Not Available	1048	Open in IMG/M
3300026257\|Ga0208407_1079869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1056	Open in IMG/M
3300026259\|Ga0208896_1182298	Not Available	540	Open in IMG/M
3300026269\|Ga0208766_1141732	Not Available	629	Open in IMG/M
3300026321\|Ga0208764_10158635	Not Available	1139	Open in IMG/M
3300026321\|Ga0208764_10263213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300026321\|Ga0208764_10359259	Not Available	690	Open in IMG/M
3300026321\|Ga0208764_10519939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	543	Open in IMG/M
3300027622\|Ga0209753_1161697	Not Available	502	Open in IMG/M
3300027779\|Ga0209709_10071010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1921	Open in IMG/M
3300027827\|Ga0209035_10303383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300027838\|Ga0209089_10036683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	3257	Open in IMG/M
3300027844\|Ga0209501_10570368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	635	Open in IMG/M
3300028487\|Ga0257109_1099276	Not Available	886	Open in IMG/M
3300028487\|Ga0257109_1173261	Not Available	622	Open in IMG/M
3300028488\|Ga0257113_1172108	Not Available	643	Open in IMG/M
3300031804\|Ga0310124_10121327	Not Available	1619	Open in IMG/M
3300031804\|Ga0310124_10314231	Not Available	945	Open in IMG/M
3300031804\|Ga0310124_10488684	Not Available	721	Open in IMG/M
3300031861\|Ga0315319_10666637	Not Available	511	Open in IMG/M
3300031886\|Ga0315318_10271820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	971	Open in IMG/M
3300031886\|Ga0315318_10744950	Not Available	548	Open in IMG/M
3300032011\|Ga0315316_10166022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1835	Open in IMG/M
3300032011\|Ga0315316_10432270	Not Available	1105	Open in IMG/M
3300032088\|Ga0315321_10395620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	859	Open in IMG/M
3300032130\|Ga0315333_10150087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1099	Open in IMG/M
3300032360\|Ga0315334_10733288	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300032360\|Ga0315334_10899695	Not Available	766	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	64.39%
Coastal	Environmental → Aquatic → Marine → Coastal	13.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.61%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.85%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.61%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	8.33%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	7.58%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	6.82%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.52%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.52%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	44.70%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	13.64%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	7.58%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	6.82%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	6.06%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	4.55%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.55%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	3.03%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	3.03%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.52%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.52%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	1.52%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.76%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental	Open in IMG/M
3300005429	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005514	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263	Environmental	Open in IMG/M
3300005516	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B	Environmental	Open in IMG/M
3300005520	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251	Environmental	Open in IMG/M
3300005521	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255	Environmental	Open in IMG/M
3300005593	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86	Environmental	Open in IMG/M
3300005599	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A	Environmental	Open in IMG/M
3300005604	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63	Environmental	Open in IMG/M
3300005605	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67	Environmental	Open in IMG/M
3300005945	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B	Environmental	Open in IMG/M
3300006011	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006313	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m	Environmental	Open in IMG/M
3300006323	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0500m	Environmental	Open in IMG/M
3300006327	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006339	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007283	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B	Environmental	Open in IMG/M
3300007508	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007509	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007512	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b	Environmental	Open in IMG/M
3300007515	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007754	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate b	Environmental	Open in IMG/M
3300007760	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate a	Environmental	Open in IMG/M
3300008225	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon	Environmental	Open in IMG/M
3300008226	Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9C Gulf of Mexico	Environmental	Open in IMG/M
3300008250	Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9B Gulf of Mexico	Environmental	Open in IMG/M
3300008251	Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico	Environmental	Open in IMG/M
3300008253	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon	Environmental	Open in IMG/M
3300008735	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um	Environmental	Open in IMG/M
3300008740	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a	Environmental	Open in IMG/M
3300008952	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um	Environmental	Open in IMG/M
3300008964	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02	Environmental	Open in IMG/M
3300009132	Combined Assembly of Gp0139359, Gp0139510	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300011329	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 250_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300020300	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981)	Environmental	Open in IMG/M
3300020332	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)	Environmental	Open in IMG/M
3300020338	Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099)	Environmental	Open in IMG/M
3300020373	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020477	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)	Environmental	Open in IMG/M
3300021065	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300025738	Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9C Gulf of Mexico (SPAdes)	Environmental	Open in IMG/M
3300025863	Marine microbial communities from the Deep Pacific Ocean - MP1788 (SPAdes)	Environmental	Open in IMG/M
3300026084	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026200	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)	Environmental	Open in IMG/M
3300026209	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)	Environmental	Open in IMG/M
3300026257	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)	Environmental	Open in IMG/M
3300026259	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)	Environmental	Open in IMG/M
3300026269	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 (SPAdes)	Environmental	Open in IMG/M
3300026321	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)	Environmental	Open in IMG/M
3300027622	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027827	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300028487	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m	Environmental	Open in IMG/M
3300028488	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m	Environmental	Open in IMG/M
3300031804	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOScombined01_1017066991	3300002040	Marine	SEFILNWNLIWKILQVVALIIIAREIDKRIRKRNEK*
Ga0066858_102231401	3300005398	Marine	FWVYCDAIQKKEYFMSLDWNLIWKIFQVVALLIIAREIDKRIRKRKK*
Ga0066846_101271351	3300005429	Marine	SWFWVYCDAIQKKEYFMSLDWNLIWKIFQVVALLIIAREIDKRIRKIKI*
Ga0066849_101636921	3300005430	Marine	KEYFMSLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK*
Ga0066866_100653242	3300005514	Marine	MSLDWDLIWKILQVFALFIIAREIDKRIRKKRKK*
Ga0066866_100719163	3300005514	Marine	YFMSLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK*
Ga0066866_100949882	3300005514	Marine	MSLDWDLIWKILQVAALFIIAREIDKRIRRKRKK*
Ga0066866_101023971	3300005514	Marine	MSLDWNLIWTILQVFALLIVAREIDKRMRRKRKK*
Ga0066866_101100462	3300005514	Marine	MSLDWDLIWKILQVVALLIIAREIDKRIRRKRKK*
Ga0066866_101912341	3300005514	Marine	MSEFILDWDLIWKILQVIALIIIAREIDKRIRKRNEK*
Ga0066866_102242032	3300005514	Marine	MSLNWDLIWTILQVVALLVIAREIDKKIRKRKKKD*
Ga0066831_100241602	3300005516	Marine	MSLDWDLIWKIFQVVALLIIAREIDKRIRRKRKK*
Ga0066864_100863443	3300005520	Marine	MSLDWDLIWKILQVAALLIIAREIDKRWRKRKNK*
Ga0066862_100229622	3300005521	Marine	MSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK*
Ga0066862_100609153	3300005521	Marine	MSLDWDLIWTILQVVALLIIAREIDKRIRRKRKK*
Ga0066862_100855642	3300005521	Marine	MSLDWDLIWTMLQVVALLIIAREIDKRIRRKRKK*
Ga0066862_101053172	3300005521	Marine	FMSLDWNLIWKILQVIALLIIAREIDKRIRKRKK*
Ga0066862_102368672	3300005521	Marine	MSLDWDLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0066837_102495471	3300005593	Marine	MSLDWDLIWKILQVVALFIVAREIDKRIRKKRKK*
Ga0066837_103593042	3300005593	Marine	MPGFILEWDLIWKILQVVALLIIAREIDKRIRKKNDQ*
Ga0066841_100399742	3300005599	Marine	VSEFILDWDLIWKILQVAALIIIDREIDKRIRKRNEK*
Ga0066852_100698502	3300005604	Marine	VCCDAIQKKKYFMSLDWNLIWKILQVVALLIIAREIDKRIRKIKI*
Ga0066850_101730442	3300005605	Marine	MSEFILDWNLIVKIIQVAALFIIAREIDKRIRKKNDQ*
Ga0066850_103359922	3300005605	Marine	MNLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK
Ga0066381_100052555	3300005945	Marine	CDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0066381_100700171	3300005945	Marine	QKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0066373_102198812	3300006011	Marine	LVAGFVKVKKEYLMSLDWNLIWKILQVVTLIIIAREIDKRIRKRKK
Ga0066836_100092012	3300006166	Marine	MKEMTEFILDWNLIIKIIQVVALFIIAKEIDNRIRK*
Ga0066836_103080212	3300006166	Marine	MGLDWDLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0066836_103690062	3300006166	Marine	MSLDWDLIWTILQVVALLIIAREIDKRIRGKRKK*
Ga0066836_103857292	3300006166	Marine	MSLDWDLIWKILQVVALFIIAREIDKRIRKKRKK*
Ga0066836_108721272	3300006166	Marine	MSGFILEWDLIWKILQVVALLIIAREIDKRIRKKNDQ*
Ga0068470_11364392	3300006308	Marine	VELDWNLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0068470_11622051	3300006308	Marine	MSLDWDLIWTILQVVALLIIAREIDKRIRKRKNK*
Ga0068471_11441753	3300006310	Marine	EYFMSLDWDLIWKILQVVALLIIASEIDKRIRKRKK*
Ga0068471_13564353	3300006310	Marine	MEEMSEFILDWNLIWKILQVVALLIIAREIDKRIRKRKKQ*
Ga0068471_13724022	3300006310	Marine	MSLDWNLIWKILQIVALLIIAREIDKRIRKRKNK*
Ga0068472_102299047	3300006313	Marine	MKKLLGILVLGFCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0068497_11082584	3300006323	Marine	MSLNWDLVWTILQVVALLIIAREIDKRIRKRKNK*
Ga0068497_11331022	3300006323	Marine	MKIMGLDWDLVWTILQVVALLIIAREIDRRIRKRKK*
Ga0068499_10488232	3300006327	Marine	MSLNWDLVWTILQVAALLIIAREIDKRIRKRKNK*
Ga0068502_13547482	3300006336	Marine	MKIMGLDWDLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0068481_13673762	3300006339	Marine	MSLDWDLIWKIFQVVALLIIAREIDKRWRKRKNK*
Ga0068481_13890001	3300006339	Marine	FMSLDWDLIWTILQVVALLIIAREIDKRIRKRKK*
Ga0068481_14382375	3300006339	Marine	FVKEKKEYFMSLDWDLIWKIFQVVALLIKAREIDKRWRKRKNK*
Ga0066372_103029682	3300006902	Marine	MSLDWDLIWTILQVVALLIVAREIDKRIRKKRKK*
Ga0066372_103352972	3300006902	Marine	MSLDWDLIWKILQVAALLIIAKEIDKRIRRKRKK*
Ga0066372_103840842	3300006902	Marine	MSLDWDLIWKILQVVALLIIAREIDKKIRRKIKK*
Ga0066372_105408382	3300006902	Marine	MSLDWDLVWTILQVVALLIIAREIDKRIRKRKNK*
Ga0066372_108319191	3300006902	Marine	LVAGFVKEKKEYLMSLDWNLIWKILQVVALIIIAREIDKRI
Ga0066372_108822841	3300006902	Marine	MSLNLDLVWTILQVVALLIIAREIDKRIRKRKNK*
Ga0066366_101480142	3300007283	Marine	MSLEWDLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0105011_10518422	3300007508	Marine	MSEFILSLDWNLIVKILQIVALFIIAREIDKRIRGKKKIK*
Ga0105011_11815382	3300007508	Marine	VSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK*
Ga0105012_10419723	3300007509	Marine	MSEFILELDWNLIVKMLQIVALFIIAREIDKRIRIRKK*
Ga0105012_10859552	3300007509	Marine	MILDWDLIWKIIQVVALLIIAKEIDKRIRKKRKK*
Ga0105012_11990092	3300007509	Marine	MSEFILDWNLIWKILQVVALIIIAREIDKRIRKRNEK*
Ga0105016_11381684	3300007512	Marine	MSFNWDLVWTILQVFALLIIAREIDKRIRKRKNK*
Ga0105021_11304921	3300007515	Marine	MSLDWDLIWKIFQVVALFIIAREIDKRIRRKRKK*
Ga0105021_12228052	3300007515	Marine	MPGFILEWDLIWKIFQVVALLIIAREIDKRIRKKNDQ*
Ga0105023_10473002	3300007754	Marine	MSGFILEWNLIWKILQVVALLIIAREIDKRIRKKNDQ*
Ga0105018_11341751	3300007760	Marine	KSKASKKEIEYFMSLDWDLIWKILQVIALLIIAREIDRRIRKRKK*
Ga0105352_10207382	3300008225	Methane Seep Mesocosm	MSVDWDLIWTILQVVALLIIAREIDKRIRRKRKK*
Ga0105355_100771702	3300008226	Methane Seep Mesocosm	LVCCGAIQKKEYFMSLDWDLIWKIFQVVALLIIAREIDKRIRKRKK*
Ga0105354_13121462	3300008250	Methane Seep Mesocosm	MSLDWDLIWKILQVVALLIIAREIDKRIRKRKNK*
Ga0105359_105562151	3300008251	Methane Seep Mesocosm	KEYSMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0105349_102137452	3300008253	Methane Seep Mesocosm	MSLDWDLIWTILQVVALLIIAKEIDKRIRKRKNK*
Ga0105349_102511872	3300008253	Methane Seep Mesocosm	MEEMSEFILDWNLIWKILQVVALLIIAREIDKKIRKRKK*
Ga0105349_103351001	3300008253	Methane Seep Mesocosm	FISIDWDLTWKTLQIVALLIIAREINKRIRKGKNK*
Ga0115657_10558351	3300008735	Marine	MSLDWDLIWKILQVVALLIIAREIDKRIRKKKKLLIF*
Ga0115657_10564143	3300008735	Marine	MSLNWDLVWIILQVVALLIIAREIDKRIRKKKINEK*
Ga0115657_12853412	3300008735	Marine	MSLDWDLIWKILQVVALFIIAKEIDKRIRRKRKK*
Ga0115657_13235522	3300008735	Marine	GFILEWDLIWKILQVVALLIIAREIDKRIRKKNDQ*
Ga0115657_13447682	3300008735	Marine	MSLNWDLIWTILQVVALLIIAREIDRRIRRKRKK*
Ga0115663_10114336	3300008740	Marine	MGLDWDLIWKILQVVALFIIAKEIDKRIRRKRKK*
Ga0115651_10233178	3300008952	Marine	MSIDWDLTWKILQIVALLIIAREIDKRIQKGKNK*
Ga0102889_12421641	3300008964	Estuarine	LTKYLKEYFMSLDWNLLIKILQVVALFIIAREIDKRIRKRKK*
Ga0118730_13730772	3300009132	Marine	MPGFILDWDLIWKIVQVVALLIIAREIDNKIRKKNDQ*
Ga0114993_107217612	3300009409	Marine	CCGAIQKNEYFMSLDWDLIWKIFQVVALLIIAREIDKRIWKRKK*
Ga0114997_101285801	3300009425	Marine	WGCCGAIQKNEYFMSLDWDLIWKIFQVVALLIIAREIDKRIWKRKK*
Ga0114932_101821282	3300009481	Deep Subsurface	MSLNWDLVWTMLQVVALLIIAREIDKRIRKRKNK*
Ga0115011_116232922	3300009593	Marine	MSLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK*
Ga0114933_105115432	3300009703	Deep Subsurface	VFVKENKEYFMSLDWDLIWKIFQVVALLIIAREIDKRIRKRKK*
Ga0114999_112046711	3300009786	Marine	LQGCCGAIQKNEYFMSLDWDLIWKIFQVVALLIIAREIDKRIWKRKK*
Ga0138367_10912621	3300011329	Marine	WVCCDLIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0163108_102258762	3300012950	Seawater	MLEFILELDWNIGWKILQVVALFIIAREIDKRIRKRKKYFK*
Ga0163108_102433771	3300012950	Seawater	KIMGLDWDLIWKILQVVALLIIAREIDKRWRKRKNK*
Ga0163108_108421082	3300012950	Seawater	WVCCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK*
Ga0163108_110130922	3300012950	Seawater	MSLNWDLIWTILQVVALLVIAREIDKRIRKRKEKD*
Ga0163111_106090331	3300012954	Surface Seawater	EFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK*
Ga0163111_113128192	3300012954	Surface Seawater	MSLDWDLIWTILQVVALLIIAREIDKRIRKRKKSK*
Ga0211662_10248532	3300020300	Marine	MPEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK
Ga0211502_10244282	3300020332	Marine	VSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK
Ga0211571_10908041	3300020338	Marine	CDAIQKKEYFMSLDWNLIWKIFQVVALLIIAREIDKRIRKIKI
Ga0211660_103211012	3300020373	Marine	MPGFILEWDLIWKILQVVALLIIAREIDKRIRKRKK
Ga0211643_106028841	3300020457	Marine	CNXPKLQGIRVSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK
Ga0211585_105505682	3300020477	Marine	FMNFNWDLVWTILQVVALLIIAREIDKRIRKRKNK
Ga0206686_11177652	3300021065	Seawater	WFWVCCDVIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0244776_107964072	3300024348	Estuarine	LTKYLKEYFMSLDWNLLIKILQVVALFIIAREIDKRIRKRKK
Ga0209292_12941011	3300025738	Methane Seep Mesocosm	LVCCGAIQKKEYFMSLDWDLIWKIFQVVALLIIAREIDKRIRKRKK
Ga0208833_10518121	3300025863	Deep Ocean	IQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0208881_10150081	3300026084	Marine	FGCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0208894_10137413	3300026200	Marine	MSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK
Ga0208894_11622072	3300026200	Marine	MSLNWDLIWTILQVVALLVIAREIDKRIRKRKEKD
Ga0207989_10583621	3300026209	Marine	FWVCCDAIQKKKYFMSLDWNLIWKILQVVALLIIAREIDKRIRKIKI
Ga0208407_10798693	3300026257	Marine	KEKEYFMSLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK
Ga0208896_11822982	3300026259	Marine	YFMSLDWNLIWKIFQVVALLIIAREIDKRIRKRKK
Ga0208766_11417322	3300026269	Marine	MSLDWDLIWKIFQVVSLLIIAREIDKRIRKRKKSK
Ga0208764_101586352	3300026321	Marine	CCDVIQKKKYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKI
Ga0208764_102632132	3300026321	Marine	MSEFILDWDLIWKILQVIALIIIAREIDKRIRKRNEK
Ga0208764_103592592	3300026321	Marine	MKEMTEFILDWNLIIKIIQVVALFIIAKEIDNRIRK
Ga0208764_105199392	3300026321	Marine	MPGFILDWDLIWKILQVVALLIIAREIDKRIRKKNDQ
Ga0209753_11616972	3300027622	Marine	GSWFWVCCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0209709_100710101	3300027779	Marine	LWGCCGAIQKNEYFMSLDWDLIWKIFQVVALLIIAREIDKRIWKRKK
Ga0209035_103033832	3300027827	Marine	MEEMSEFILDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0209089_100366831	3300027838	Marine	KKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0209501_105703681	3300027844	Marine	RKIMGLDWDLIWKILQVVALLIIAREIDKRWRKRKNK
Ga0257109_10992761	3300028487	Marine	KEYFMSLDWDLIWKIFQVVALLIIPREIDKRIRKRKK
Ga0257109_11732612	3300028487	Marine	WVCCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0257113_11721082	3300028488	Marine	DAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0310124_101213272	3300031804	Marine	KKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKIGI
Ga0310124_103142312	3300031804	Marine	KEKKEYFMSLDWDLTWKILQVVALLIIAREIDKRIRKRKK
Ga0310124_104886841	3300031804	Marine	FCDAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0315319_106666371	3300031861	Seawater	MKAFLSHVKEKKEYFMSLDWNLIWTMFQVVALLIIAREIDKRIRKRKK
Ga0315318_102718202	3300031886	Seawater	MEEMSEFILDWNLIWKILQVVALLIIAREIDKRIRKRKKQ
Ga0315318_107449501	3300031886	Seawater	SWFWVCCNAIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK
Ga0315316_101660221	3300032011	Seawater	RSPEEYFMSLNWDLVWTLLQVVALLIIAREIDKRIRKRKNK
Ga0315316_104322703	3300032011	Seawater	VFVKEKKEYFMSLDWDLIWKIFQVVALLIIAREIDKRIRKRKK
Ga0315321_103956202	3300032088	Seawater	IRMSEFILDWDLIWKILQVAALIIIAREIDKRIRKRNEK
Ga0315333_101500873	3300032130	Seawater	FMTLDWDLIWTILQVVALLIIAREIDKRIRRKRKK
Ga0315334_107332882	3300032360	Seawater	YFMSLDWNLIWKILQVVALLIIAREVDKRIRKRKK
Ga0315334_108996951	3300032360	Seawater	AIQKKEYFMSLDWNLIWKILQVVALLIIAREIDKRIRKRKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061265

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences