Sample 3300025539

Overview

Basic Information
IMG/M Taxon OID	3300025539 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101326 \| Ga0210109
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	143613506
Sequencing Scaffolds	34
Novel Protein Genes	35
Associated Families	34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	13
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_123	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → unclassified Motiliproteus → Motiliproteus sp. MSK22-1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas saliphila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.003361	Long. (^o)	-122.468277	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016540	Metagenome / Metatranscriptome	246	Y
F018949	Metagenome / Metatranscriptome	232	Y
F021675	Metagenome / Metatranscriptome	218	Y
F026198	Metagenome	198	Y
F034234	Metagenome / Metatranscriptome	175	Y
F036766	Metagenome / Metatranscriptome	169	Y
F037736	Metagenome / Metatranscriptome	167	Y
F039643	Metagenome	163	Y
F040630	Metagenome	161	Y
F042358	Metagenome / Metatranscriptome	158	Y
F043410	Metagenome	156	Y
F043801	Metagenome / Metatranscriptome	155	Y
F045765	Metagenome / Metatranscriptome	152	N
F047064	Metagenome / Metatranscriptome	150	Y
F047065	Metagenome / Metatranscriptome	150	Y
F053305	Metagenome / Metatranscriptome	141	Y
F053659	Metagenome / Metatranscriptome	141	Y
F058118	Metagenome	135	N
F058158	Metagenome / Metatranscriptome	135	Y
F065254	Metagenome	128	Y
F070125	Metagenome / Metatranscriptome	123	N
F070270	Metagenome	123	Y
F070272	Metagenome	123	Y
F076930	Metagenome	117	Y
F080060	Metagenome / Metatranscriptome	115	Y
F080660	Metagenome	115	Y
F081352	Metagenome / Metatranscriptome	114	Y
F084253	Metagenome	112	Y
F084254	Metagenome / Metatranscriptome	112	Y
F087210	Metagenome / Metatranscriptome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F092076	Metagenome / Metatranscriptome	107	Y
F092304	Metagenome	107	Y
F098879	Metagenome	103	Y

Family

Category

Number of Sequences

3D Structure?

F016540

Metagenome / Metatranscriptome

246

F018949

Metagenome / Metatranscriptome

232

F021675

Metagenome / Metatranscriptome

218

F026198

Metagenome

198

F034234

Metagenome / Metatranscriptome

175

F036766

Metagenome / Metatranscriptome

169

F037736

Metagenome / Metatranscriptome

167

F039643

Metagenome

163

F040630

Metagenome

161

F042358

Metagenome / Metatranscriptome

158

F043410

Metagenome

156

F043801

Metagenome / Metatranscriptome

155

F045765

Metagenome / Metatranscriptome

152

F047064

Metagenome / Metatranscriptome

150

F047065

Metagenome / Metatranscriptome

150

F053305

Metagenome / Metatranscriptome

141

F053659

Metagenome / Metatranscriptome

141

F058118

Metagenome

135

F058158

Metagenome / Metatranscriptome

135

F065254

Metagenome

128

F070125

Metagenome / Metatranscriptome

123

F070270

Metagenome

123

F070272

Metagenome

123

F076930

Metagenome

117

F080060

Metagenome / Metatranscriptome

115

F080660

Metagenome

115

F081352

Metagenome / Metatranscriptome

114

F084253

Metagenome

112

F084254

Metagenome / Metatranscriptome

112

F087210

Metagenome / Metatranscriptome

110

F088283

Metagenome / Metatranscriptome

109

F092076

Metagenome / Metatranscriptome

107

F092304

Metagenome

107

F098879

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210109_1000289	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9751	Open in IMG/M
Ga0210109_1000717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5406	Open in IMG/M
Ga0210109_1002714	All Organisms → cellular organisms → Bacteria → Proteobacteria	2497	Open in IMG/M
Ga0210109_1003197	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2303	Open in IMG/M
Ga0210109_1004161	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2035	Open in IMG/M
Ga0210109_1007131	Not Available	1607	Open in IMG/M
Ga0210109_1008136	Not Available	1514	Open in IMG/M
Ga0210109_1008237	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
Ga0210109_1013369	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_123	1214	Open in IMG/M
Ga0210109_1017231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → unclassified Motiliproteus → Motiliproteus sp. MSK22-1	1079	Open in IMG/M
Ga0210109_1019584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1016	Open in IMG/M
Ga0210109_1019860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1009	Open in IMG/M
Ga0210109_1021119	Not Available	981	Open in IMG/M
Ga0210109_1026003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	891	Open in IMG/M
Ga0210109_1032216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	808	Open in IMG/M
Ga0210109_1032792	Not Available	802	Open in IMG/M
Ga0210109_1038513	Not Available	745	Open in IMG/M
Ga0210109_1039090	Not Available	740	Open in IMG/M
Ga0210109_1041192	Not Available	722	Open in IMG/M
Ga0210109_1042793	All Organisms → Viruses	709	Open in IMG/M
Ga0210109_1051780	Not Available	649	Open in IMG/M
Ga0210109_1051782	Not Available	649	Open in IMG/M
Ga0210109_1054878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	632	Open in IMG/M
Ga0210109_1055373	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	629	Open in IMG/M
Ga0210109_1059346	Not Available	609	Open in IMG/M
Ga0210109_1060521	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
Ga0210109_1066745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas saliphila	576	Open in IMG/M
Ga0210109_1069004	Not Available	567	Open in IMG/M
Ga0210109_1070784	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	560	Open in IMG/M
Ga0210109_1076678	Not Available	538	Open in IMG/M
Ga0210109_1081031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	523	Open in IMG/M
Ga0210109_1081866	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	521	Open in IMG/M
Ga0210109_1082209	All Organisms → cellular organisms → Archaea	520	Open in IMG/M
Ga0210109_1084543	Not Available	512	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210109_1000289

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

9751

Open in IMG/M

Ga0210109_1000717

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

5406

Open in IMG/M

Ga0210109_1002714

All Organisms → cellular organisms → Bacteria → Proteobacteria

2497

Open in IMG/M

Ga0210109_1003197

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2303

Open in IMG/M

Ga0210109_1004161

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

2035

Open in IMG/M

Ga0210109_1007131

Not Available

1607

Open in IMG/M

Ga0210109_1008136

Not Available

1514

Open in IMG/M

Ga0210109_1008237

All Organisms → cellular organisms → Bacteria

1507

Open in IMG/M

Ga0210109_1013369

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_123

1214

Open in IMG/M

Ga0210109_1017231

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → unclassified Motiliproteus → Motiliproteus sp. MSK22-1

1079

Open in IMG/M

Ga0210109_1019584

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

1016

Open in IMG/M

Ga0210109_1019860

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

1009

Open in IMG/M

Ga0210109_1021119

Not Available

981

Open in IMG/M

Ga0210109_1026003

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

891

Open in IMG/M

Ga0210109_1032216

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

808

Open in IMG/M

Ga0210109_1032792

Not Available

802

Open in IMG/M

Ga0210109_1038513

Not Available

745

Open in IMG/M

Ga0210109_1039090

Not Available

740

Open in IMG/M

Ga0210109_1041192

Not Available

722

Open in IMG/M

Ga0210109_1042793

All Organisms → Viruses

709

Open in IMG/M

Ga0210109_1051780

Not Available

649

Open in IMG/M

Ga0210109_1051782

Not Available

649

Open in IMG/M

Ga0210109_1054878

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

632

Open in IMG/M

Ga0210109_1055373

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont

629

Open in IMG/M

Ga0210109_1059346

Not Available

609

Open in IMG/M

Ga0210109_1060521

All Organisms → cellular organisms → Bacteria → Proteobacteria

603

Open in IMG/M

Ga0210109_1066745

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → Luteimonas saliphila

576

Open in IMG/M

Ga0210109_1069004

Not Available

567

Open in IMG/M

Ga0210109_1070784

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.

560

Open in IMG/M

Ga0210109_1076678

Not Available

538

Open in IMG/M

Ga0210109_1081031

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium

523

Open in IMG/M

Ga0210109_1081866

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

521

Open in IMG/M

Ga0210109_1082209

All Organisms → cellular organisms → Archaea

520

Open in IMG/M

Ga0210109_1084543

Not Available

512

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210109_1000289	Ga0210109_100028911	F084253	FVLIKAAQGFAVPAHGTGRRTSVRRSRKPAENAEQDKKSHLWMDTN
Ga0210109_1000422	Ga0210109_10004227	F087210	MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAVRALKTR
Ga0210109_1000717	Ga0210109_10007173	F016540	MSQSLDAIPVLTDIVEDDLAAVATIDSTMLFLGELEAHLTAAIHEQADELVHNACREMEALLLEQVSDRLRAQLPALVARIVDQHFHGPARTN
Ga0210109_1002714	Ga0210109_10027141	F043410	MAQYSNLLKRLEVTDETFDVQSMINKALIGILISKEIVTEEEMLIILGNINRQQ
Ga0210109_1003197	Ga0210109_10031971	F084253	IKAAQGFAVRRTSVRRSRKPAENAEQDKKGHLWMETS
Ga0210109_1004161	Ga0210109_10041612	F047065	MTNLLNKFSEAAKVVSSSKTHMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP
Ga0210109_1007131	Ga0210109_10071313	F084254	EPQVIEIMAEVIRQSKRHPRADQVASALAIRGLPIAEKDVMTVFDQYDIEKKIADSH
Ga0210109_1008136	Ga0210109_10081363	F043801	MAKKLTGICPCGFSFTTPHGEDDAVKVMQYHAELVHKKEYPNGATKEEAMKYIKEVE
Ga0210109_1008237	Ga0210109_10082373	F092076	MFTHKIDKLQGIIFARVSGTPTTVLMIDHIQNVLNDPDFDPKYNSIIVFEENTHIAGFPKDEIETIRHILDGYAQQRTGRNWAVVAPNERQEAFLKLNLELISPVKFNIRIFQSEEDALNWIKGR
Ga0210109_1013369	Ga0210109_10133691	F080060	MTAERTDPMTPKAHDGAARIGAYTLICRLICSLLVAGPVVYFSLVADGSAAEFLVLVLLAPVAGIVLVANSLFCLYRYRKVESFWIGLAFVLVGVTGVIEAWYFLPKFRM
Ga0210109_1017231	Ga0210109_10172311	F058158	MIEKKKSYKSDFTKTEKYDIDIWELHVKEREHILTQIAKDRRTSKIRTWIELIFMLGFIYYMLYDIYKDGDLDTIIKFLKT
Ga0210109_1019584	Ga0210109_10195841	F036766	MNRSFASWITANPGAAVFLTGLLGLLPLFGLGFAFFLPGAVPALVTLVRGPRAGLLVAAGASILLALAMWLIGRPAPVGLIYSLWVLGPPVALGAMLGRSGSLTLCLQVAVLAGAVMIMA
Ga0210109_1019860	Ga0210109_10198602	F034234	PGAEGSTPLVTALLRDAQGIMELRRLRPDTSLLRKARLAGRLNCGKPILDPRTREVIGCEIEPIPLPAT
Ga0210109_1021119	Ga0210109_10211191	F026198	MDIDIAILVAGVLIMVGGIVGGGAIYAGLEKLADAIKNKAK
Ga0210109_1026003	Ga0210109_10260031	F040630	LFGILNFGHCDLPFDWAQGGESFDFAQDREPVERHVEPFGLCDLLFEIF
Ga0210109_1032216	Ga0210109_10322162	F070272	MSAEIESLTTDVKSRRTSHGVSPMLVALVVLGLLLAIYAHWRFGQFDERIDRLRGQVNELRSAQGRIESRLQSMAADLESSRATWRTEVRGLREVPAQVNELGQSVEELRARTEAPQRA
Ga0210109_1032792	Ga0210109_10327922	F088283	MKTKALFLYPLLAACAGCAADADVVGTYVPSCVAYEGNTIELSGQRFTWDKFTDEVMVDDAGNKLDPFPGFPVRGSYAIEDDVLRLTTDVGELAGELYLVRRPGQIYLLTEAEFGAWQKDGAVPDCALLLGAGG
Ga0210109_1038513	Ga0210109_10385131	F053305	MLKKSLSIVLVALFVISFIAVATLSAEEGKITGTVMSVNVETGEMVVKDDAGEMKSLIADPKAGVDLKMLKEGDPVS
Ga0210109_1039090	Ga0210109_10390901	F081352	MFSANVSLMIRLIRKISAITLTCLLALNLAAGAVVVVEHCPSSMASSSPIDMSHCDGLLNFAFPIQGCCGKCGDIFCDLIKNPLQDANVVKPSPFQGSCYPFFLGTVDPIAESGTWVASSAPRYLFFAALAWSQIPLYIENLALII
Ga0210109_1041192	Ga0210109_10411921	F076930	MTQRAYDLGFRRGYEIANRTPIDPSISKDEFVKMVLETARNSLESTVFESISAELESMNTKYPAFDGWTVFAEGVMQGAGENFLDRTGNQE
Ga0210109_1042793	Ga0210109_10427932	F098879	MATKKTSMFTLTERLTLSNFVDNFATIDLGSYVDVGDRQALQVHSVDFIFQGTTIPTHAQTT
Ga0210109_1051780	Ga0210109_10517801	F047064	METIEIKTVKSWKRDVIEYFEDLEIICDDYNRMALRYLGKLNRLLHEKQIDQSEYDALNKRLLHASEALNHIPKTILDLK
Ga0210109_1051782	Ga0210109_10517821	F080660	MPDKKRSREEFEAYLKPMSNQDYPKVNYSNPDAWRIRASKEKQTH
Ga0210109_1054878	Ga0210109_10548781	F053659	MSIAEAKPKRENRTITLHLGNTLAEYEASYLTEAGIQAVIGKVEIADSLNWGCLATGHKPGCPRQSRFTHHDSYSRWAKHFDGTRSLVTILRVRCLDCDAVFSVQPALIIRYKRYETDAVEKLMTLLFIT
Ga0210109_1055373	Ga0210109_10553732	F037736	VPYRVQLDGLQILWLLAKPLWTHGIGESRSKTITGWLLMGAADANHIWWLNTNPFTGLLLHLNSYRILHLPCGFLNMLCFL
Ga0210109_1059346	Ga0210109_10593462	F070125	DVAGPRRNAAPMTSADDRRRWIEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHDGDCVIFDDFAIRFGSDDRVKSVFRTIDGSVKGD
Ga0210109_1060521	Ga0210109_10605211	F070270	GVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL
Ga0210109_1066745	Ga0210109_10667451	F018949	MRPEMSDSSALPDWLRGDPVAEDLHARGLAVTRAAWLEAAYGSSNETLLLFDKETREWVRRHFPA
Ga0210109_1069004	Ga0210109_10690041	F058118	VTEKTSDKLKKIKLKDYLLAMAIKLYNLEVLVDDLVYVGSDIRAKSQEDAVRILGIISGGEVTEDSEVLSCEEKTLH
Ga0210109_1070784	Ga0210109_10707841	F042358	MTLSPYTNAQKAHSSHLSSNTTYEKGITMKNEEQFSIYMALDGPHLDGLIGSAGIMRFDWPEREFYIQHYEGISAAHNVSLAPNGKLALLGNFSQQIVLLDVSNPQAMKLMARQATQYFEECPYRLRANTHHLWYPDNERFIGAIGDDLYRFHVDNLKEPEQIGPHYLFNAHEIRWD
Ga0210109_1076678	Ga0210109_10766781	F039643	MRKFWKKQVEDLGGDPSVLLKGRTQLAKEKAIALVAAHKEAITVRNAGYVIGRAACIVKNPCLDFWQGVKEGLNS
Ga0210109_1081031	Ga0210109_10810311	F045765	MKYHSSKGENTTTIKIDDRLYDLLRKFCDKEGRRLKDFVEDAIENAIYTEESIKILNEKIKSLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLEPDDEDFEILKNDPFRVSKGAQLDLFR
Ga0210109_1081866	Ga0210109_10818661	F065254	LNAPVALNRGSEQAEKASVATETLLWGCPITNFKATLPFNRMKQFFAAFKKRPHGPELARFEGYN
Ga0210109_1082209	Ga0210109_10822091	F092304	MLKKEDVKQRLECEVRESLEHKLVLRREAALIGLVAFSVALWGSKLFTAASPGTSVVFQIWGFNVHFHHFNYGFILLITGLLLTFFEGPWCVRVQHSLFGVGLGLIVDEYWLLLIFDDHSSTYFGPESQYISTMIGLAITIIYAVIAFGVFFKSRREIKIWKQLH
Ga0210109_1084543	Ga0210109_10845431	F021675	CIKKVFLMPIYTFKNLETKEEYDEVMSYEELQEYLKQDNIQQVFKFNMFRYSDGGGMKDQFTDWCKESSVNGKGDFKPYGKAAKGMKQKGDK

Scaffold ID

Protein ID

Family

Sequence

Ga0210109_1000289

Ga0210109_100028911

F084253

FVLIKAAQGFAVPAHGTGRRTSVRRSRKPAENAEQDKKSHLWMDTN

Ga0210109_1000422

Ga0210109_10004227

F087210

MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAVRALKTR

Ga0210109_1000717

Ga0210109_10007173

F016540

MSQSLDAIPVLTDIVEDDLAAVATIDSTMLFLGELEAHLTAAIHEQADELVHNACREMEALLLEQVSDRLRAQLPALVARIVDQHFHGPARTN

Ga0210109_1002714

Ga0210109_10027141

F043410

MAQYSNLLKRLEVTDETFDVQSMINKALIGILISKEIVTEEEMLIILGNINRQQ

Ga0210109_1003197

Ga0210109_10031971

F084253

IKAAQGFAVRRTSVRRSRKPAENAEQDKKGHLWMETS

Ga0210109_1004161

Ga0210109_10041612

F047065

MTNLLNKFSEAAKVVSSSKTHMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP

Ga0210109_1007131

Ga0210109_10071313

F084254

EPQVIEIMAEVIRQSKRHPRADQVASALAIRGLPIAEKDVMTVFDQYDIEKKIADSH

Ga0210109_1008136

Ga0210109_10081363

F043801

MAKKLTGICPCGFSFTTPHGEDDAVKVMQYHAELVHKKEYPNGATKEEAMKYIKEVE

Ga0210109_1008237

Ga0210109_10082373

F092076

MFTHKIDKLQGIIFARVSGTPTTVLMIDHIQNVLNDPDFDPKYNSIIVFEENTHIAGFPKDEIETIRHILDGYAQQRTGRNWAVVAPNERQEAFLKLNLELISPVKFNIRIFQSEEDALNWIKGR

Ga0210109_1013369

Ga0210109_10133691

F080060

MTAERTDPMTPKAHDGAARIGAYTLICRLICSLLVAGPVVYFSLVADGSAAEFLVLVLLAPVAGIVLVANSLFCLYRYRKVESFWIGLAFVLVGVTGVIEAWYFLPKFRM

Ga0210109_1017231

Ga0210109_10172311

F058158

MIEKKKSYKSDFTKTEKYDIDIWELHVKEREHILTQIAKDRRTSKIRTWIELIFMLGFIYYMLYDIYKDGDLDTIIKFLKT

Ga0210109_1019584

Ga0210109_10195841

F036766

MNRSFASWITANPGAAVFLTGLLGLLPLFGLGFAFFLPGAVPALVTLVRGPRAGLLVAAGASILLALAMWLIGRPAPVGLIYSLWVLGPPVALGAMLGRSGSLTLCLQVAVLAGAVMIMA

Ga0210109_1019860

Ga0210109_10198602

F034234

PGAEGSTPLVTALLRDAQGIMELRRLRPDTSLLRKARLAGRLNCGKPILDPRTREVIGCEIEPIPLPAT

Ga0210109_1021119

Ga0210109_10211191

F026198

MDIDIAILVAGVLIMVGGIVGGGAIYAGLEKLADAIKNKAK

Ga0210109_1026003

Ga0210109_10260031

F040630

LFGILNFGHCDLPFDWAQGGESFDFAQDREPVERHVEPFGLCDLLFEIF

Ga0210109_1032216

Ga0210109_10322162

F070272

MSAEIESLTTDVKSRRTSHGVSPMLVALVVLGLLLAIYAHWRFGQFDERIDRLRGQVNELRSAQGRIESRLQSMAADLESSRATWRTEVRGLREVPAQVNELGQSVEELRARTEAPQRA

Ga0210109_1032792

Ga0210109_10327922

F088283

MKTKALFLYPLLAACAGCAADADVVGTYVPSCVAYEGNTIELSGQRFTWDKFTDEVMVDDAGNKLDPFPGFPVRGSYAIEDDVLRLTTDVGELAGELYLVRRPGQIYLLTEAEFGAWQKDGAVPDCALLLGAGG

Ga0210109_1038513

Ga0210109_10385131

F053305

MLKKSLSIVLVALFVISFIAVATLSAEEGKITGTVMSVNVETGEMVVKDDAGEMKSLIADPKAGVDLKMLKEGDPVS

Ga0210109_1039090

Ga0210109_10390901

F081352

MFSANVSLMIRLIRKISAITLTCLLALNLAAGAVVVVEHCPSSMASSSPIDMSHCDGLLNFAFPIQGCCGKCGDIFCDLIKNPLQDANVVKPSPFQGSCYPFFLGTVDPIAESGTWVASSAPRYLFFAALAWSQIPLYIENLALII

Ga0210109_1041192

Ga0210109_10411921

F076930

MTQRAYDLGFRRGYEIANRTPIDPSISKDEFVKMVLETARNSLESTVFESISAELESMNTKYPAFDGWTVFAEGVMQGAGENFLDRTGNQE

Ga0210109_1042793

Ga0210109_10427932

F098879

MATKKTSMFTLTERLTLSNFVDNFATIDLGSYVDVGDRQALQVHSVDFIFQGTTIPTHAQTT

Ga0210109_1051780

Ga0210109_10517801

F047064

METIEIKTVKSWKRDVIEYFEDLEIICDDYNRMALRYLGKLNRLLHEKQIDQSEYDALNKRLLHASEALNHIPKTILDLK

Ga0210109_1051782

Ga0210109_10517821

F080660

MPDKKRSREEFEAYLKPMSNQDYPKVNYSNPDAWRIRASKEKQTH

Ga0210109_1054878

Ga0210109_10548781

F053659

MSIAEAKPKRENRTITLHLGNTLAEYEASYLTEAGIQAVIGKVEIADSLNWGCLATGHKPGCPRQSRFTHHDSYSRWAKHFDGTRSLVTILRVRCLDCDAVFSVQPALIIRYKRYETDAVEKLMTLLFIT

Ga0210109_1055373

Ga0210109_10553732

F037736

VPYRVQLDGLQILWLLAKPLWTHGIGESRSKTITGWLLMGAADANHIWWLNTNPFTGLLLHLNSYRILHLPCGFLNMLCFL

Ga0210109_1059346

Ga0210109_10593462

F070125

DVAGPRRNAAPMTSADDRRRWIEALHAYRDDSERLFALVASLANLLDRTLVVETMESVLGVTAVHDGDCVIFDDFAIRFGSDDRVKSVFRTIDGSVKGD

Ga0210109_1060521

Ga0210109_10605211

F070270

GVDLDTAKKFGPIVIDYVKHHGGEDIVDKLRTALKL

Ga0210109_1066745

Ga0210109_10667451

F018949

MRPEMSDSSALPDWLRGDPVAEDLHARGLAVTRAAWLEAAYGSSNETLLLFDKETREWVRRHFPA

Ga0210109_1069004

Ga0210109_10690041

F058118

VTEKTSDKLKKIKLKDYLLAMAIKLYNLEVLVDDLVYVGSDIRAKSQEDAVRILGIISGGEVTEDSEVLSCEEKTLH

Ga0210109_1070784

Ga0210109_10707841

F042358

MTLSPYTNAQKAHSSHLSSNTTYEKGITMKNEEQFSIYMALDGPHLDGLIGSAGIMRFDWPEREFYIQHYEGISAAHNVSLAPNGKLALLGNFSQQIVLLDVSNPQAMKLMARQATQYFEECPYRLRANTHHLWYPDNERFIGAIGDDLYRFHVDNLKEPEQIGPHYLFNAHEIRWD

Ga0210109_1076678

Ga0210109_10766781

F039643

MRKFWKKQVEDLGGDPSVLLKGRTQLAKEKAIALVAAHKEAITVRNAGYVIGRAACIVKNPCLDFWQGVKEGLNS

Ga0210109_1081031

Ga0210109_10810311

F045765

MKYHSSKGENTTTIKIDDRLYDLLRKFCDKEGRRLKDFVEDAIENAIYTEESIKILNEKIKSLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLEPDDEDFEILKNDPFRVSKGAQLDLFR

Ga0210109_1081866

Ga0210109_10818661

F065254

LNAPVALNRGSEQAEKASVATETLLWGCPITNFKATLPFNRMKQFFAAFKKRPHGPELARFEGYN

Ga0210109_1082209

Ga0210109_10822091

F092304

MLKKEDVKQRLECEVRESLEHKLVLRREAALIGLVAFSVALWGSKLFTAASPGTSVVFQIWGFNVHFHHFNYGFILLITGLLLTFFEGPWCVRVQHSLFGVGLGLIVDEYWLLLIFDDHSSTYFGPESQYISTMIGLAITIIYAVIAFGVFFKSRREIKIWKQLH

Ga0210109_1084543

Ga0210109_10845431

F021675

CIKKVFLMPIYTFKNLETKEEYDEVMSYEELQEYLKQDNIQQVFKFNMFRYSDGGGMKDQFTDWCKESSVNGKGDFKPYGKAAKGMKQKGDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025539: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences