3300025530: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025530
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061315 | Ga0207866
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 212247773
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000698	Metagenome / Metatranscriptome	930	Y
F000927	Metagenome / Metatranscriptome	831	Y
F004068	Metagenome / Metatranscriptome	454	Y
F012742	Metagenome	277	Y
F036567	Metagenome / Metatranscriptome	169	Y
F037084	Metagenome	168	Y
F060529	Metagenome / Metatranscriptome	132	Y
F072104	Metagenome / Metatranscriptome	121	N
F073002	Metagenome / Metatranscriptome	120	Y
F089797	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207866_1023707	Not Available	1081
Ga0207866_1024636	Not Available	1038
Ga0207866_1030162	Not Available	846
Ga0207866_1038221	Not Available	671
Ga0207866_1039495	Not Available	650
Ga0207866_1044047	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	585
Ga0207866_1044846	Not Available	575
Ga0207866_1047691	Not Available	542
Ga0207866_1049404	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207866_1023707	Ga0207866_10237071	F000927	MDYSSYFIFLYRMFNMDSGATNFMQATSKHKLSTEIFPDFIHLYSRGDKKIKNSKPSTKIKSTESFTKDLVLKFLPETSPELNILQKIFQDLTHYDKLVIQLI
Ga0207866_1024636	Ga0207866_10246361	F073002	KVRILSQLRESDLPVGDASRTLPSSSGLLEVLPIYQLLVDYIGSKVCSVS
Ga0207866_1030162	Ga0207866_10301621	F004068	MGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSSAFVAKNSDTTSWDELLHYLH
Ga0207866_1038221	Ga0207866_10382211	F000698	VHSGPFGRLTKLGAKWTELVQKFVPQSRVGIFHNERTCFTPLNPKLTSEPFGCPTKLGAKRAGLVQKFVPQNHVRIFRNECTRSSPLDPKLTFWCVSYYLGASGTVWLPYETQCKTVQTSAKVRATKSRRNFSQRTHPIHPIKS
Ga0207866_1039495	Ga0207866_10394951	F012742	GPFGCLTKLGGKQAELVQKCVPRSRVGIFRNERTLSTPLDPKLMFWCVLYYLGAFGTIWLPYKTRCKTGRTSAKVRATKSRRNFSNECTRSTPLDPKLTFWCVRTIWEHLGLFGSLTKLGAKRAELVEKFVPRSRPGIFRNEHTRCTPLDPKLTFWCVSYYLCAFGTIWLP
Ga0207866_1044047	Ga0207866_10440471	F072104	PIGDRAGVPDLSVSRDKFDLAEYDPHDPTTTSEPEAPMQSLNQLPVVTDLVDARSA
Ga0207866_1044846	Ga0207866_10448461	F036567	VICKKLKAAASSNFYPLFLSDLALELNTKVVPNFIRNLLAKFQPKRIGIAGDNRKLQKLCFL
Ga0207866_1047691	Ga0207866_10476911	F060529	WYQTGRNSNFKFKFKKMKNSQKIPKNTSRCDESNGVKFSQKFVHLV
Ga0207866_1048477	Ga0207866_10484771	F089797	MVPNAPKHYETHQNKSLGSDGVDRVDLLQKILTQLCGLNFYINYNSL
Ga0207866_1049404	Ga0207866_10494041	F037084	CEKSRHDFVAQAFALIGPVHPILHQVSCNYETIPNAPKHYETHQNMSLGSNGVDQVRSLRKIQCDFVARTFVLIEPVQYVLKQVSCSYGTIPNAPKYYKNAPKH