Metagenome / Metatranscriptome Family F078399

Overview

Basic Information

• Family ID: F078399
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 47 residues
• Representative Sequence: MENNYWIVNEWLIFKPEFNEELTNYYDLINKYKKIMFSNYNDPLI
• Number of Associated Samples: 55
• Number of Associated Scaffolds: 116

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 87.07 %
• % of genes from short scaffolds (< 2000 bps): 81.03 %
• Associated GOLD sequencing projects: 48
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (85.345 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (30.172 % of family members)
• Environment Ontology (ENVO): Unclassified (61.207 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (50.862 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 13.70%
  β-sheet: 16.44%
  Coil/Unstructured: 69.86%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF05725	FNIP	20.69
PF00560	LRR_1	3.45
PF08707	PriCT_2	1.72
PF01434	Peptidase_M41	0.86
PF00240	ubiquitin	0.86
PF04851	ResIII	0.86
PF13871	Helicase_C_4	0.86
PF01180	DHO_dh	0.86
PF00271	Helicase_C	0.86
PF00565	SNase	0.86
PF12874	zf-met	0.86
PF00069	Pkinase	0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.45
COG4886	Leucine-rich repeat (LRR) protein	Transcription [K]	3.45
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.86
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.86
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.86
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.86
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.86

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
All Organisms	root	All Organisms	14.66 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Viruses	superkingdom	All Organisms → Viruses	13.79 %
cellular organisms	root	All Organisms → cellular organisms	0.86 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Varidnaviria	clade	All Organisms → Viruses → Varidnaviria	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.86 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Bamfordvirae	kingdom	All Organisms → Viruses → Varidnaviria → Bamfordvirae	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Amoebozoa	clade	All Organisms → cellular organisms → Eukaryota → Amoebozoa	0.86 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Nucleocytoviricota	phylum	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Evosea	phylum	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea	0.86 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Megaviricetes	class	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Eumycetozoa	class	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa	0.86 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Imitervirales	order	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Dictyostelia	clade	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia	0.86 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Mimiviridae	family	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	10.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Dictyosteliales	order	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales	0.86 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Mimivirus	genus	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae → Mimivirus	0.86 %
Dictyosteliaceae	family	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
unclassified Mimivirus	no rank	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae → Mimivirus → unclassified Mimivirus	0.86 %
Polysphondylium	genus	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Polysphondylium	0.86 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.72 %
Polysphondylium violaceum	species	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Polysphondylium → Polysphondylium violaceum	0.86 %
Megavirus chiliensis	species	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae → Mimivirus → unclassified Mimivirus → Megavirus chiliensis	0.86 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000154|SI47jul10_150mDRAFT_c1011922	Not Available	2378
3300000154|SI47jul10_150mDRAFT_c1012886	Not Available	2235
3300000160|SI48aug10_135mDRAFT_c1026831	Not Available	891
3300000160|SI48aug10_135mDRAFT_c1037519	Not Available	686
3300000164|SI39no09_200mDRAFT_c1005720	Not Available	4405
3300000164|SI39no09_200mDRAFT_c1038974	Not Available	987
3300000166|SI48aug10_200mDRAFT_c1006869	Not Available	1049
3300000188|SI60aug11_150mDRAFT_c1023061	Not Available	772
3300000193|SI47jul10_135mDRAFT_c1020269	Not Available	1415
3300004273|Ga0066608_1010870	Not Available	3049
3300004273|Ga0066608_1015991	All Organisms → Viruses → Predicted Viral	2381
3300004273|Ga0066608_1121083	Not Available	654
3300004274|Ga0066607_1186844	Not Available	505
3300004276|Ga0066610_10124123	Not Available	874
3300004276|Ga0066610_10177371	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	701
3300004276|Ga0066610_10238394	Not Available	584
3300004277|Ga0066611_10217654	Not Available	649
3300004278|Ga0066609_10267843	Not Available	533
3300006803|Ga0075467_10236420	Not Available	998
3300007519|Ga0105055_10339773	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	1358
3300007519|Ga0105055_10531370	Not Available	972
3300007519|Ga0105055_10560020	Not Available	934
3300007519|Ga0105055_10616383	Not Available	868
3300007519|Ga0105055_10709260	Not Available	781
3300007519|Ga0105055_11107254	Not Available	563
3300007519|Ga0105055_11198713	Not Available	532
3300007520|Ga0105054_10321650	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Polysphondylium → Polysphondylium violaceum	1381
3300007520|Ga0105054_10505648	Not Available	979
3300007520|Ga0105054_10517225	Not Available	962
3300007520|Ga0105054_10546421	Not Available	922
3300007520|Ga0105054_10988227	Not Available	587
3300007520|Ga0105054_11129626	Not Available	533
3300007522|Ga0105053_10133058	Not Available	2495
3300007522|Ga0105053_10381485	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	1219
3300007522|Ga0105053_10504199	Not Available	986
3300007522|Ga0105053_10700634	Not Available	764
3300007522|Ga0105053_10799760	Not Available	691
3300007962|Ga0102907_1092010	Not Available	794
3300012950|Ga0163108_10500634	Not Available	785
3300018428|Ga0181568_10541258	Not Available	923
3300020182|Ga0206129_10209773	Not Available	853
3300020185|Ga0206131_10235284	Not Available	867
(restricted) 3300022912|Ga0233430_1037724	Not Available	2554
(restricted) 3300022912|Ga0233430_1040620	Not Available	2424
(restricted) 3300022912|Ga0233430_1283521	Not Available	610
(restricted) 3300022916|Ga0233431_1090094	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	1457
(restricted) 3300023210|Ga0233412_10000752	Not Available	18086
(restricted) 3300023210|Ga0233412_10044026	All Organisms → Viruses	1806
(restricted) 3300023210|Ga0233412_10136017	Not Available	1046
3300024228|Ga0228633_1051390	Not Available	1038
3300024228|Ga0228633_1059032	Not Available	951
3300024229|Ga0233402_1073842	Not Available	715
(restricted) 3300024252|Ga0233435_1085189	Not Available	1091
(restricted) 3300024256|Ga0233446_1000531	Not Available	39014
(restricted) 3300024256|Ga0233446_1065442	Not Available	1165
(restricted) 3300024256|Ga0233446_1193117	Not Available	535
(restricted) 3300024257|Ga0233442_1001545	Not Available	17246
(restricted) 3300024257|Ga0233442_1018870	All Organisms → Viruses → Predicted Viral	2594
(restricted) 3300024257|Ga0233442_1041209	Not Available	1464
(restricted) 3300024258|Ga0233440_1026566	Not Available	2446
(restricted) 3300024258|Ga0233440_1139754	Not Available	725
(restricted) 3300024259|Ga0233437_1127762	Not Available	1202
(restricted) 3300024261|Ga0233439_10065960	Not Available	1992
3300024291|Ga0228660_1091105	Not Available	595
(restricted) 3300024299|Ga0233448_1002686	Not Available	12117
(restricted) 3300024336|Ga0233447_1002789	Not Available	11945
(restricted) 3300024336|Ga0233447_1180786	Not Available	549
(restricted) 3300024339|Ga0233445_1152442	Not Available	710
3300024415|Ga0228662_1112797	Not Available	626
3300025468|Ga0209685_1054710	Not Available	794
3300025468|Ga0209685_1101605	Not Available	529
3300025478|Ga0209576_1004052	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae → Mimivirus → unclassified Mimivirus → Megavirus chiliensis	5322
3300025478|Ga0209576_1013063	All Organisms → Viruses	2293
3300025478|Ga0209576_1028582	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	1326
3300025478|Ga0209576_1068167	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	724
3300025508|Ga0208148_1085118	Not Available	706
3300025508|Ga0208148_1094549	Not Available	653
3300025596|Ga0209662_1041593	Not Available	1248
3300025596|Ga0209662_1130004	Not Available	577
3300025622|Ga0209264_1092110	Not Available	771
3300025622|Ga0209264_1094615	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	758
3300025643|Ga0209151_1064724	Not Available	1024
3300025643|Ga0209151_1121678	Not Available	683
3300025643|Ga0209151_1149537	Not Available	597
3300025662|Ga0209664_1083200	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	928
3300025662|Ga0209664_1113485	Not Available	767
3300025662|Ga0209664_1117675	Not Available	750
3300027253|Ga0208680_1028084	Not Available	1113
3300027832|Ga0209491_10397920	Not Available	980
3300027832|Ga0209491_10407606	Not Available	960
3300027832|Ga0209491_10663014	Not Available	609
3300027848|Ga0209390_10276003	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	1348
3300027848|Ga0209390_10383367	Not Available	1027
3300027848|Ga0209390_10399760	Not Available	990
3300027848|Ga0209390_10581370	Not Available	703
3300027848|Ga0209390_10641434	Not Available	641
(restricted) 3300027996|Ga0233413_10490686	Not Available	543
(restricted) 3300028045|Ga0233414_10218050	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	860
3300028173|Ga0257118_1054273	Not Available	991
3300028189|Ga0257127_1014746	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae	3217
3300028189|Ga0257127_1059255	Not Available	1230
3300028189|Ga0257127_1135575	Not Available	688
3300028195|Ga0257125_1019246	Not Available	3036
3300028274|Ga0257119_1049586	Not Available	1136
3300028274|Ga0257119_1132402	Not Available	574
3300031519|Ga0307488_10446318	Not Available	787
3300032435|Ga0335398_10165188	Not Available	2082
3300032435|Ga0335398_10174330	Not Available	2007
3300032435|Ga0335398_10184327	Not Available	1932
3300032435|Ga0335398_10347567	Not Available	1209
3300032435|Ga0335398_10624399	Not Available	725
3300032435|Ga0335398_10671846	Not Available	678
3300032435|Ga0335398_10801428	Not Available	576
3300032435|Ga0335398_10880560	Not Available	528
3300032435|Ga0335398_10883927	Not Available	526

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	69.83%
Freshwater	Environmental → Aquatic → Freshwater	30.17%

Type

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	30.17%
Inlet	Environmental → Aquatic → Marine → Inlet	26.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified	17.24%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	14.66%
Coastal	Environmental → Aquatic → Marine → Coastal	8.62%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.72%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.86%

Subtype

Habitat	Taxonomy	Distribution
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	30.17%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	26.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	17.24%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	12.07%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	8.62%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.72%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.72%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.86%

Habitat

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	30.17%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	20.69%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	17.24%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	12.07%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	6.03%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.31%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.45%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.72%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.72%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.86%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.86%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.86%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000154	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 150m	Environmental
3300000160	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 135m	Environmental
3300000164	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 200m	Environmental
3300000166	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 200m	Environmental
3300000188	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m	Environmental
3300000193	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 135m	Environmental
3300004273	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m	Environmental
3300004274	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m	Environmental
3300004276	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m	Environmental
3300004277	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m	Environmental
3300004278	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m	Environmental
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental
3300007520	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)	Environmental
3300007522	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01	Environmental
3300007962	Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02	Environmental
3300012522	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental
3300022912 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MG	Environmental
3300022916 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_200_MG	Environmental
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental
3300024228	Seawater microbial communities from Monterey Bay, California, United States - 41D	Environmental
3300024229	Seawater microbial communities from Monterey Bay, California, United States - 54D	Environmental
3300024252 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MG	Environmental
3300024256 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_120_MG	Environmental
3300024257 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MG	Environmental
3300024258 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MG	Environmental
3300024259 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG	Environmental
3300024261 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG	Environmental
3300024291	Seawater microbial communities from Monterey Bay, California, United States - 74D	Environmental
3300024299 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MG	Environmental
3300024336 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MG	Environmental
3300024339 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_100_MG	Environmental
3300024415	Seawater microbial communities from Monterey Bay, California, United States - 76D	Environmental
3300025468	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m (SPAdes)	Environmental
3300025478	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m (SPAdes)	Environmental
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental
3300025596	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA (SPAdes)	Environmental
3300025622	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)	Environmental
3300025643	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m (SPAdes)	Environmental
3300025662	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)	Environmental
3300027253	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)	Environmental
3300027832	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)	Environmental
3300027848	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)	Environmental
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental
3300028173	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_150m	Environmental
3300028189	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m	Environmental
3300028195	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_200	Environmental
3300028274	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_200m	Environmental
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental
3300032435	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SI47jul10_150mDRAFT_10119221	3300000154	Marine	MENNYWIVENWLIFKPEFNEELTDYYDIINKYNKIMFSNYNDPLIAI
SI47jul10_150mDRAFT_10128862	3300000154	Marine	MENNYQIVDEWLIFKPKFNEELTNYYDVINKYKKIMFSNYNDPFILYPLQF*
SI48aug10_135mDRAFT_10268311	3300000160	Marine	MENNHWIVDDWLIFKPKFNEELINYYDIINKYKKIMFSNYNNPLI
SI48aug10_135mDRAFT_10375192	3300000160	Marine	MENNYWIVNEWLIFKPKFNEELSKYYSIINKYKKIMFSNYNDPLIA
SI39no09_200mDRAFT_10057207	3300000164	Marine	MKNMENNYWIVDDWLIFKPEFNEELTIHYDVINKYKKIMMTL*
SI39no09_200mDRAFT_10389741	3300000164	Marine	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNY
SI48aug10_200mDRAFT_10068692	3300000166	Marine	MENNSWYWIEDGWLIFKPSFNNNLLNYYDVINKYKKIIFSNYNKHL
SI60aug11_150mDRAFT_10230611	3300000188	Marine	MENNYWVVDGWLIFKPEFDEKLDEYYDVINKYNKIMFSNYNDPLIAIKTNN
SI47jul10_135mDRAFT_10202692	3300000193	Marine	MTNNYWIVDEWLIFKPEFNEELTNYYSIINKYNKIMFSDYNNPLIAIETNNQYKNKY
Ga0066608_10108701	3300004273	Marine	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYND
Ga0066608_10159915	3300004273	Marine	MENNYWIVDDWLIFKPEFNEELTIHYDVINKYKKIMMTL*
Ga0066608_11210831	3300004273	Marine	MKNNYWVVDGWLIFKPEFNDELNEYYDVINKYEKIMFSNYNDPLIAIKTNNEWNREYLNNYI
Ga0066607_11868442	3300004274	Marine	MENNYWIVNEWLIFKPEFNEELTNYYDLINKYKKIMFSNYNDPFILYPLQF*
Ga0066610_101241231	3300004276	Marine	MKMENNYWIVDEWLIFKPDFNEELIDYCGVINKYKKIMFSNY
Ga0066610_101773711	3300004276	Marine	MDNNYWIVDDCLIFKPEFNDKLDEYYNVINKYNKIMFSNYNDPL
Ga0066610_102383942	3300004276	Marine	MTNNYWIVDEWLIFKPEFNEELTNYYSIINKYNKIMFSNYNDPLIAIETNN
Ga0066611_102176542	3300004277	Marine	MSNNYWIVDEWLIFKPKFNEELTNYYDVINKYKKIMFSNYNDPFILYPLQF*
Ga0066609_102678432	3300004278	Marine	MENNYWIVDEWLIFKSEFNEKLTNYYDLINKYKKIMFSNYNDPLMAI
Ga0075467_102364203	3300006803	Aqueous	MKNNYWIVNEWLMFKPSFNEDLLNYYDIINKYKKIL
Ga0105055_103397732	3300007519	Freshwater	MENNFWIVNKWLIFKPEFNEELTNCYEIINKYKKVFFSNYNDPLIAIKTNN
Ga0105055_105313701	3300007519	Freshwater	MVNNYWIENEWLIFKPEFNEELTNYYEIINKYKKIMFSVFL*
Ga0105055_105600203	3300007519	Freshwater	MENNYWIVNEWLIFKPKFNEELTNYYVIINKYKKVIFSIYNDSLIVIKTN
Ga0105055_106163833	3300007519	Freshwater	MENNFWIVNEWLIFKQSFNEELTNYYEIINKYKKVIFSDYNDP
Ga0105055_107092602	3300007519	Freshwater	MENNYWIERDWLIFKPEFNKELTNYYDVIKKYKKIIFSNYNDPLIAIKTNN
Ga0105055_111072541	3300007519	Freshwater	MENNYWIDSDWLIFKPEFNKELTNYYDVIKKYKKIIFSNYNDPLIAIKT
Ga0105055_111987132	3300007519	Freshwater	MKNNYWIVNELLIFKPEFNEELTNYYEIINKYKKIMFSNYND
Ga0105054_103216501	3300007520	Freshwater	MENNYWIVDDLLIFKPKFNEELTNYYKIINKYKKVMFSNY
Ga0105054_105056481	3300007520	Freshwater	MENNYWLKVEWLIFKPEFNEELINYYDIINKYKKVIFS
Ga0105054_105172252	3300007520	Freshwater	MENNYWIEDKLLIFKPDFNEEFINYYVILNKYKKVMFSNYNKL*
Ga0105054_105464211	3300007520	Freshwater	VKNNYWIVNELLIFKPEFNEELTNYYEIINKYKKIMFS
Ga0105054_109882272	3300007520	Freshwater	MENNYWIVNEWLIFKPSFNEELTNYYEIINKYKKVIFSDY
Ga0105054_111296261	3300007520	Freshwater	MENNYWIVNKWLIFKPDFNEKLTNYYDVINKYSKIMFSNYNDPLIAIEINNKYNYEFKNN
Ga0105053_101330581	3300007522	Freshwater	MESNFWIVNEWLIFKPEFNEELTYYYDIINKYKKVMFSNYNKP
Ga0105053_103814851	3300007522	Freshwater	MENNYWIVDNLLIFKPSFNENLTDYYVIINKYKKVTFSNYNDPLIAIETNNKYNNEFKNI
Ga0105053_105041991	3300007522	Freshwater	MENNYWIVDDLLIFKPFFTEELTNYYDVINKYKKIIFSIYNDSLIVIKTNNIY
Ga0105053_107006342	3300007522	Freshwater	MENNYWIEDEWLIFKPKFNEELTDYNDIINKYKKVTFSNYNDPLIAIET
Ga0105053_107997602	3300007522	Freshwater	MENNYWIVDGWLIFKPEFNEELTNYYVIINKYKKVMFS
Ga0102907_10920101	3300007962	Estuarine	MENNYWIVDDWLIFKPEFNDKLDEYYDMINKYNKILFSNYDDP
Ga0129326_11020732	3300012522	Aqueous	MTFLYWIIDDKLIFKPEFNEKLKEYYNVIGQYNTLIFSNYDDPEITI
Ga0163108_105006341	3300012950	Seawater	MENNYWIEDGWIVFKPKFNKHLDNYNDLINQYSKIMFSNYNDPLIAIKLNNEYNEKYY
Ga0181568_105412581	3300018428	Salt Marsh	MENNYWIVDDWLIFKNDFNKEFDEYYNIINKYEKIMFSDYNNPFIEIE
Ga0206129_102097731	3300020182	Seawater	MENNYWIADKWLIFKPEFNEELTNYYDAINKYKKIIFSNYDNLS
Ga0206131_102352842	3300020185	Seawater	MKNMENNYWIVNDWLIFKPYFNFEITNYYDIINKHNKIMFSNHNEPLIALKKNNIYEFG
(restricted) Ga0233430_10377244	3300022912	Seawater	MKNMENNYWIVDDWLIFKPEFNEELTIHYDVINKYKKIMMTL
(restricted) Ga0233430_10406201	3300022912	Seawater	MDENYWIVDNWLIFKPEFNEELNEYYDIINRYSKIIFSNYNKPLIVIETNNKWNKEY
(restricted) Ga0233430_12835212	3300022912	Seawater	MENNYWIIDECIIFKPNFNEELTDYYDIINKYNKIIF
(restricted) Ga0233431_10900942	3300022916	Seawater	MKNNYWIVDDWLIFKPEFNEPLNDYYDIINQYKKIMFSNYDD
(restricted) Ga0233412_100007521	3300023210	Seawater	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMF
(restricted) Ga0233412_100440261	3300023210	Seawater	MSNNYWIVDEWLIFKPKFNEELTYYYGIINKYKKIIFSNYNNPLIAIETNNQH
(restricted) Ga0233412_101360171	3300023210	Seawater	MENNYWIIDECIIFKPNFNEELTDYYDIINKYNKIIFSEYNDPLIAIKTNNQFEYKYNSNYI
Ga0228633_10513902	3300024228	Seawater	MKDNYWIVDEWLIFKPKFNEELTDYYDIINKYNKIMFSNYNDPLIAIENNNF
Ga0228633_10590322	3300024228	Seawater	MDENYWIVDDWLIFKPEFNEELNEYYDIINRYSKIMFSNYNEPLIAIETNNLWINKYN
Ga0233402_10738421	3300024229	Seawater	MNENYWIVDDWLIFKPKFNKILTEEDYTVINSYNKIIFSNYDEPFIPFDFIKN
(restricted) Ga0233435_10851891	3300024252	Seawater	MENNYWIVDDSLIFKPKFNEELTDYYDVINKYSKIIFSNYNDHLIS
(restricted) Ga0233446_100053120	3300024256	Seawater	MENNYQIVDEWLIFKPKFNEELTNYYDVINKYKKIMFSNYNDPFILYPLQF
(restricted) Ga0233446_10654421	3300024256	Seawater	MENNYWIVDDLIIFKPEFNEELINYYDIINKYQKIIFSNYDKLE
(restricted) Ga0233446_11931172	3300024256	Seawater	MENNYWIVDDLIIFKPKFNEELTDYYDIINQCKKIMFSNYDDPLIL
(restricted) Ga0233442_10015451	3300024257	Seawater	MKNNYWIIDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDPLIAIET
(restricted) Ga0233442_10188704	3300024257	Seawater	MENNYWIVDDWLIFKPEFNEELTIHYDVINKYKKIMMTL
(restricted) Ga0233442_10412091	3300024257	Seawater	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDPLIAIET
(restricted) Ga0233440_10265661	3300024258	Seawater	MKNNYWIIDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDPLIAIE
(restricted) Ga0233440_11397542	3300024258	Seawater	MENNYWIIDEWLIFKPSFNEDLTNYYDVINKYKKIIFSNY
(restricted) Ga0233437_11277622	3300024259	Seawater	MENNYWIVDDLIIFKPEFNEELINYYDIINKYQKIIFSNY
(restricted) Ga0233439_100659601	3300024261	Seawater	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDPLIAI
Ga0228660_10911052	3300024291	Seawater	MENNYWILDEWLIFKPKFNEELTDYYDIINKYNKIMFSNYNDPLIAIKTN
(restricted) Ga0233448_100268614	3300024299	Seawater	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFS
(restricted) Ga0233447_10027891	3300024336	Seawater	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDS
(restricted) Ga0233447_11807861	3300024336	Seawater	MKNNYWIVDDWLIFKPKFNEELTDYYDIINQCKKIMFSNYDDPLIL
(restricted) Ga0233445_11524422	3300024339	Seawater	MKNNYWIVDEWLIFKPNFNEELTNYYDIINKYKKVIFSNYDDPLIAIETNNNYKYKYKNN
Ga0228662_11127971	3300024415	Seawater	MENNYWIVDNWLIFKPDFNDKLDEYYDIINKYKKIMLS
Ga0209685_10547102	3300025468	Marine	MENNYWIVNDWLIFKPEFNEPSDDYYDIINQYKKIMFSN
Ga0209685_11016051	3300025468	Marine	MKMENNYWIVENWLIFKPEFNEELTDYYDIINKYNKIIFSEYNDPLIAIKTNNQFEYKYN
Ga0209576_10040521	3300025478	Marine	MENNYWIVEEWLIFKPEFNKELTNYYDVINKYKKIMFSNYNNPLIVIETNNQYDDEYDDNYY
Ga0209576_10130631	3300025478	Marine	MENNYWIVDDLLIFKPRFNEELTNYYDVINKYNKIIFSNYNNL
Ga0209576_10285821	3300025478	Marine	MENNYWIVNEWLIFKPEFNEELTNYYDLINKYKKIMFSNYNDPLI
Ga0209576_10681672	3300025478	Marine	MDNNYWIVDDCLIFKPEFNDKLDEYYNVINKYNKIMFSNYNDPLIAIKTNNEWNREYL
Ga0208148_10851182	3300025508	Aqueous	MENNYWIEDELLIFKPSFNDNLKKNYNIINKYKKIMFSNYNDHSIAIKTNNKF
Ga0208148_10945491	3300025508	Aqueous	MENNYWIEDELLIFKPSFNDDLKKNYNIINKYKKIMFSNYNDHSIAIKTNNKF
Ga0209662_10415932	3300025596	Marine	MENNYWIVNEWLIFKPEFNEELTNYYDLINKYKKIMFSNYNDPFILYPLQF
Ga0209662_11300042	3300025596	Marine	MKMENNYWIVDEWLIFKPDFNEELIDYCGVINKYKKIMFSNYD
Ga0209264_10921102	3300025622	Marine	MENNHWIVDDWLIFKPKFNEELINYYDIINKYKKIMFSNYNNPLIAIET
Ga0209264_10946151	3300025622	Marine	MENNYWIVEEWLIFKPEFNKELTNYYDVINKYKKIMFSNYNNPLIVIE
Ga0209151_10647242	3300025643	Marine	MENNYWIVDDLLIFKPKFNKILTEEDYTVINSYNKIIFSN
Ga0209151_11216782	3300025643	Marine	MENNYWIVDEWLIFKPKFNEELTNYYSIINKYNKIMFSNYNDL
Ga0209151_11495372	3300025643	Marine	NNYWIVDEWLIFKPEFNEELTNYYDLINKYKKIMFSNYNDPFILYPLQF
Ga0209664_10832002	3300025662	Marine	MKMENNYWIVENWLIFKPEFNEELTDYYDIINKYNK
Ga0209664_11134852	3300025662	Marine	MTNNYWIVDEWLIFKPEFNEELTNYYSIINKYNKIMFSDYNN
Ga0209664_11176752	3300025662	Marine	MENNYWIVDEWLIFKPTFNEELTYYYDIINKYKKIMFSNYDNTLIAIETNNQYKYEYHN
Ga0208680_10280842	3300027253	Estuarine	MENNYWIVDEWLIFKLKFNENLDEYYDVINKYQKVIFSNYNEPLIAIKTNN
Ga0209491_103979201	3300027832	Freshwater	VKNNYWIVNELLIFKPEFNEELTNYYEIINKYKKIMFSNYNDPLTHLTF
Ga0209491_104076062	3300027832	Freshwater	MENNYWIVNEWLIFKPSYNEELTNYYKIINKYKKVIFSNYN
Ga0209491_106630142	3300027832	Freshwater	MENNYWIVNEWLIFKPSFNEELTNYYEIINKYKKVIFSDYNDPVIT
Ga0209390_102760032	3300027848	Freshwater	MENNYWIVDNLLIFKPSFNENLTDYYVIINKYKKVTFSNYNDPLIAIETNN
Ga0209390_103833672	3300027848	Freshwater	MENNYWIVDDLLIFKPFFTEELTNYYDVINKYKKIIFSIYNDSLIVIK
Ga0209390_103997601	3300027848	Freshwater	MENNYWVVDDLLIFKPSFTEELTNYYDVINKYKKIIFSIYNDSLIVIKTN
Ga0209390_105813703	3300027848	Freshwater	MENNYWIVQDLLIFKPSFNEELTNYYEIINKSNKVIFSDYIILNTI
Ga0209390_106414341	3300027848	Freshwater	MENNFWIVNEWLIFKPSFNEELTNYYEIINKYKKVIFSDYN
(restricted) Ga0233413_104906861	3300027996	Seawater	MENNYWIVDDLLIFKPEFNEVLDDYYDLINKYKKIIFSNYNESEIAIKTNNFYND
(restricted) Ga0233414_102180502	3300028045	Seawater	MENNYQIVDEWLIFKPKFNEELTNYYDVINKYKKIMFSNYNDP
Ga0257118_10542732	3300028173	Marine	MENNHWIVDDWLIFKPKFNEELINYYDIINKYKKIMFSNYNNPLIAIETNNQ
Ga0257127_10147466	3300028189	Marine	MENNYQIVDEWLIFKPKFNEELTNYYDVINKYKKVMFSNYNDPFILYPLQF
Ga0257127_10592551	3300028189	Marine	MENNYWIVDDWLIFKPEFNDKLYEYYDMINKYNKIIFSNYDDPHIAIE
Ga0257127_11355751	3300028189	Marine	MENNYWIVDDLLIFKPEFNDKLDEYYDMINKYNKIIFSNYDEPLIAIENNNC
Ga0257125_10192461	3300028195	Marine	MENNYWIVDNWLIFKPEFNDKLDEYYDMINKYSKIIFSNYNEPI
Ga0257119_10495861	3300028274	Marine	MENNYWIVNDWLIFKPEFNEPSDDYYDIINQYKKIMFSNYNDPLIAIETNNKYDDKYDNK
Ga0257119_11324021	3300028274	Marine	MKMENNYWIVDEWLIFKPEFNKELTNYYDVINKYKKIMFSNYNDPLISIETNNQYKSKYL
Ga0307488_104463182	3300031519	Sackhole Brine	MENNYWIVNDILIFKPLFNECLINYYDIINKYKKIIFSNYNDPLIAI
Ga0335398_101651882	3300032435	Freshwater	MVNNYWIENEWLIFKPEFNEELTNYYEIINKYKKIMFSVFL
Ga0335398_101743304	3300032435	Freshwater	MENNYWIVNEWLIFKPSFNEELTNYYEIINKYKKVIFSDYNDPV
Ga0335398_101843274	3300032435	Freshwater	MENNYWIVNEWLIFKPKFNEELTNYYVIINKYKKVIF
Ga0335398_103475672	3300032435	Freshwater	MKNNYWIVDNLLIFKPSFNEELTDYYVIINKYKKVMFSNYNDRLIVIKTNNKYEPKY
Ga0335398_106243992	3300032435	Freshwater	MENNYWFVDDLLIFKPFFTEELTNYYDVINKYKKIIFSIYNDSLIVIKTNNIYN
Ga0335398_106718461	3300032435	Freshwater	MENNFWIVNKWLIFKPEFNEELTNCYEIINKYKKVFFSN
Ga0335398_108014281	3300032435	Freshwater	MENNYWIVEDLIIFKPDFNKELTDYYDIINKYKKVTFSNFNDPLIAIETNNKYKD
Ga0335398_108805602	3300032435	Freshwater	MENNYWIVEDLIIFKPKFNEELTDYNDIINKYKKVTFSNYNDPLIAIERNNKYN
Ga0335398_108839272	3300032435	Freshwater	MENNYWIVDDLLIFKPKFNEELTDYNDIINKYKKVTFSNYNDPLIAI