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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025222 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054688 | Ga0208831 |
| Sample Name | Marine microbial communities from the Deep Pacific Ocean - MP2253 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 97887556 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 26 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon | 1 |
| Not Available | 13 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | West of El Salvador, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 10.09 | Long. (o) | -99.25 | Alt. (m) | N/A | Depth (m) | 3007.91 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002030 | Metagenome | 601 | Y |
| F002753 | Metagenome / Metatranscriptome | 532 | Y |
| F005684 | Metagenome / Metatranscriptome | 393 | Y |
| F006423 | Metagenome | 373 | Y |
| F006552 | Metagenome | 370 | Y |
| F008912 | Metagenome / Metatranscriptome | 326 | Y |
| F011704 | Metagenome / Metatranscriptome | 288 | Y |
| F013095 | Metagenome | 274 | Y |
| F024333 | Metagenome / Metatranscriptome | 206 | Y |
| F032810 | Metagenome | 179 | N |
| F040684 | Metagenome / Metatranscriptome | 161 | N |
| F041826 | Metagenome / Metatranscriptome | 159 | Y |
| F049047 | Metagenome / Metatranscriptome | 147 | N |
| F050430 | Metagenome / Metatranscriptome | 145 | N |
| F060979 | Metagenome / Metatranscriptome | 132 | Y |
| F065861 | Metagenome / Metatranscriptome | 127 | Y |
| F066126 | Metagenome | 127 | Y |
| F066848 | Metagenome / Metatranscriptome | 126 | N |
| F068920 | Metagenome / Metatranscriptome | 124 | Y |
| F071317 | Metagenome / Metatranscriptome | 122 | N |
| F076171 | Metagenome | 118 | N |
| F077768 | Metagenome | 117 | Y |
| F082562 | Metagenome | 113 | N |
| F090504 | Metagenome | 108 | N |
| F099440 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208831_1002381 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 3091 | Open in IMG/M |
| Ga0208831_1002743 | All Organisms → cellular organisms → Bacteria | 2897 | Open in IMG/M |
| Ga0208831_1003202 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2702 | Open in IMG/M |
| Ga0208831_1003326 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → environmental samples → uncultured Candidatus Poseidoniales archaeon | 2655 | Open in IMG/M |
| Ga0208831_1004379 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2330 | Open in IMG/M |
| Ga0208831_1005384 | Not Available | 2112 | Open in IMG/M |
| Ga0208831_1005695 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 2051 | Open in IMG/M |
| Ga0208831_1006907 | Not Available | 1860 | Open in IMG/M |
| Ga0208831_1009435 | All Organisms → cellular organisms → Bacteria | 1580 | Open in IMG/M |
| Ga0208831_1011708 | Not Available | 1411 | Open in IMG/M |
| Ga0208831_1012558 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1359 | Open in IMG/M |
| Ga0208831_1012828 | Not Available | 1343 | Open in IMG/M |
| Ga0208831_1012845 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 1342 | Open in IMG/M |
| Ga0208831_1016025 | Not Available | 1185 | Open in IMG/M |
| Ga0208831_1018770 | All Organisms → Viruses → Predicted Viral | 1082 | Open in IMG/M |
| Ga0208831_1029798 | Not Available | 816 | Open in IMG/M |
| Ga0208831_1034318 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 744 | Open in IMG/M |
| Ga0208831_1045989 | Not Available | 613 | Open in IMG/M |
| Ga0208831_1049724 | Not Available | 580 | Open in IMG/M |
| Ga0208831_1050915 | Not Available | 571 | Open in IMG/M |
| Ga0208831_1052344 | Not Available | 561 | Open in IMG/M |
| Ga0208831_1055787 | Not Available | 536 | Open in IMG/M |
| Ga0208831_1059085 | Not Available | 515 | Open in IMG/M |
| Ga0208831_1061442 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208831_1002381 | Ga0208831_10023813 | F066848 | MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLKGARQIAADQRLPVDPVAQSADPELDLVA |
| Ga0208831_1002743 | Ga0208831_10027432 | F071317 | MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVSGPFHKSELKSSDSISQRFVTDLDIFKIETNYVTSFGNYDPGPMASLNLPLLI |
| Ga0208831_1003202 | Ga0208831_10032023 | F090504 | MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQLLFFFPIVLIAFHSPVEKEK |
| Ga0208831_1003326 | Ga0208831_10033264 | F005684 | VFDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRMASTGPGRMHS |
| Ga0208831_1004379 | Ga0208831_10043791 | F066126 | KNRANCGGKNSVGKAIRNTATIPEYKKRLNNNDLKSNI |
| Ga0208831_1005384 | Ga0208831_10053843 | F040684 | SQGKPCCKNKSGKGKVACKFNRANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNSSINKNNCTNCAKSPWWKFWGKKKGCCNTNS |
| Ga0208831_1005695 | Ga0208831_10056951 | F082562 | VNKHIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI |
| Ga0208831_1006907 | Ga0208831_10069074 | F002030 | MIGFLIFGLVVLSTICLWILIEERKSWKFLVWFIPILLLIVTSTYVTYTSILGFPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPPKNTQE |
| Ga0208831_1009435 | Ga0208831_10094351 | F076171 | FRVINGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRAKQYEREYLEYKELMGNIVDVAMNNENKLPFMSWELYNRLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKKFFTNTNE |
| Ga0208831_1011708 | Ga0208831_10117082 | F050430 | MDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSAKE |
| Ga0208831_1012558 | Ga0208831_10125584 | F006552 | ISPVLKIKSSRINPAANIPKPIPIARKAIDILNNVGLSVFLNPIYEITPTTIPTKSPTKFRIISRKNSNYADSVTVLNKVSEQVF |
| Ga0208831_1012828 | Ga0208831_10128282 | F065861 | MGIIIVIRRKISLIYRENSIIFDLAFRVVLFMIRGEIIGRNNNSAAIPTLEEGLLHKNKLVLNCLT |
| Ga0208831_1012845 | Ga0208831_10128453 | F041826 | KTKNNPTALQSKEMAIPDISACGIDSYATASKVIVHQ |
| Ga0208831_1014998 | Ga0208831_10149983 | F068920 | LNCNKDANEAEVRPFPNDETTPPVTNIYRAMEVQYSKF |
| Ga0208831_1016025 | Ga0208831_10160252 | F024333 | MSKDLKDKFGIWLDDVKDRIYNVFGRDKSEKEENLYETRWVWYHSALVIELFIIIILLWYIAI |
| Ga0208831_1018770 | Ga0208831_10187702 | F006423 | MKSFKQHLDEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATGGQSILSTVDFKKLYKR |
| Ga0208831_1018770 | Ga0208831_10187703 | F077768 | LMDLIMKYADDPKYMPNINKSWIALGKEYKSDGKGKSLIIKDYIDGMEKIMKKYSKPLRSVLTDYTKKRTLDPDPDSGDVAMWDELVINNFTIQKVHVGQEFGPDFSDPDVVDRFSKHFEGLGVSYELYDDVGDMVDYINKVVRRGT |
| Ga0208831_1029798 | Ga0208831_10297981 | F099440 | VQLIKLKNQVLNGVNLIDENGRKIMVCGLHNNGQEKYIENFSQWTCNLLASCIIYVD |
| Ga0208831_1034318 | Ga0208831_10343181 | F060979 | DSGGSFLTDPGTLAAAAGVAAAVGLGLSGLGSKLLGGLLRFLGGTGFGLFLIGLFRRDKRPGPPIDFTIFTDGPLTHLEWSSPTTGGPAEKYVLEGRKDGRWGELLDFDAENTRAAVPTSEVEGAEAWRLRAVNDHGMGKPSDAPLTDTPKRAGNDTPDET |
| Ga0208831_1045989 | Ga0208831_10459891 | F049047 | KTLGKAFIPDYPSLDEEQSKEVMLDTNDFIKEQLSSTPFHVRLGLTFIGFIFLCFILAIKSVQIFKKEKHSDVSIILSVIPLNKYLSSFARVYRTLTVLAFYEHPKVIKIIDVQHGVTRKLD |
| Ga0208831_1049724 | Ga0208831_10497241 | F008912 | MKNLVVTLGITGCGKSRWLKDKSPVIETDDLRIELLDDISDSTTQEGLIFGTAAKKISKLFDTYDTVYFGATLVDSKYRIPFLQSIQDMCKHKLVIDVVIFPGIPELSKERIARDLKSGVQRADSIKFIDEQYEQYLHTMSIFNKEKNFYRSIKRSAE |
| Ga0208831_1050915 | Ga0208831_10509151 | F013095 | MKKTTPIIPIKLPTNSTVSLTSPASGVPKIAIKKPVTIIGTPIPKVICFDAILSVALKIVYEVYD |
| Ga0208831_1052344 | Ga0208831_10523442 | F011704 | MNIDNFQELIDLTDYLDLTDEYLIRKFKEGGSYLIIDTYGDFLILKRDEVDTVTNIIWNDLYGPISEEIPHILN |
| Ga0208831_1055787 | Ga0208831_10557872 | F013095 | MNKMTPIIPIKLPMNSTVSLTSPTRGAQKTAIKKPVTIIGIPIPTVICFDAMLSITAKIVYEVYDEI |
| Ga0208831_1059085 | Ga0208831_10590851 | F032810 | IKHKKVHYNEKYPGNWMTDDKRKKIELCFDSVEKIVSLKAALTRAVANISDNLETAIERLEHRQFVLDRDPFADCALNEGLMKLDSKDIEYIQRQYTDSLWETMQILLPHYRTTKE |
| Ga0208831_1061442 | Ga0208831_10614421 | F002753 | ESVNNTVSDRFTPAVFETESVKLTDSDRFTPDVFEIESVNNTVSDRFTPAVFETESVKLTDSDRFTPAVFETESVKLTDSDRFTPAVFDIESVNNTDSVRFTGDVFDIESVNDTDSDRFTGAVFDIESVNDTDSVRFTGAVFDIESARLTDSDRFTGAVFETESVND |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |