Sample 3300025117

Overview

Basic Information
IMG/M Taxon OID	3300025117 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056924 \| Ga0208958
Sample Name	Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	439981598
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	1
All Organisms → Viruses → Predicted Viral	2
Not Available	3
unclassified Thiobacillus → Thiobacillus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.534762	Long. (^o)	-107.782602	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F019877	Metagenome	227	Y
F033383	Metagenome / Metatranscriptome	177	Y
F048726	Metagenome / Metatranscriptome	147	Y
F057792	Metagenome	135	Y
F071379	Metagenome	122	Y
F071896	Metagenome / Metatranscriptome	121	N
F091086	Metagenome	107	Y
F094578	Metagenome / Metatranscriptome	106	Y
F099974	Metagenome / Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F019877

Metagenome

227

F033383

Metagenome / Metatranscriptome

177

F048726

Metagenome / Metatranscriptome

147

F057792

Metagenome

135

F071379

Metagenome

122

F071896

Metagenome / Metatranscriptome

121

F091086

Metagenome

107

F094578

Metagenome / Metatranscriptome

106

F099974

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208958_1002223	All Organisms → cellular organisms → Archaea	17157	Open in IMG/M
Ga0208958_1008599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis	5839	Open in IMG/M
Ga0208958_1024240	All Organisms → Viruses → Predicted Viral	2553	Open in IMG/M
Ga0208958_1054205	Not Available	1390	Open in IMG/M
Ga0208958_1064632	All Organisms → Viruses → Predicted Viral	1209	Open in IMG/M
Ga0208958_1082307	unclassified Thiobacillus → Thiobacillus sp.	1004	Open in IMG/M
Ga0208958_1099407	All Organisms → cellular organisms → Archaea	865	Open in IMG/M
Ga0208958_1137058	Not Available	668	Open in IMG/M
Ga0208958_1140742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	653	Open in IMG/M
Ga0208958_1158948	Not Available	590	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208958_1002223

All Organisms → cellular organisms → Archaea

17157

Open in IMG/M

Ga0208958_1008599

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Robinsoniella → Robinsoniella peoriensis

5839

Open in IMG/M

Ga0208958_1024240

All Organisms → Viruses → Predicted Viral

2553

Open in IMG/M

Ga0208958_1054205

Not Available

1390

Open in IMG/M

Ga0208958_1064632

All Organisms → Viruses → Predicted Viral

1209

Open in IMG/M

Ga0208958_1082307

unclassified Thiobacillus → Thiobacillus sp.

1004

Open in IMG/M

Ga0208958_1099407

All Organisms → cellular organisms → Archaea

865

Open in IMG/M

Ga0208958_1137058

Not Available

668

Open in IMG/M

Ga0208958_1140742

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

653

Open in IMG/M

Ga0208958_1158948

Not Available

590

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208958_1002223	Ga0208958_100222335	F094578	WPLQRLKGMYFAMHCWKCKKFELPMEEYKIRCENNIQKIIDDLNVKEMKFKEFNEIIKNSTFCEFEKRDFSNNCPICKKLDVITTDFN
Ga0208958_1008599	Ga0208958_10085991	F048726	MTNFIGRSLTANQAEQNVELNMAFINLIVNDSASVVTLSFDIASASASGNLMVLKVGEARENIAVPFGKLYYKAAADASA
Ga0208958_1024240	Ga0208958_10242401	F099974	MGAETKELAKVSYVTDTDVSYYEIGEVEGAFQEAQLKDYIKRFGHEKICSQLGYMQFQIWKAVREINGERDSQEGAKDVSCTNAT
Ga0208958_1054205	Ga0208958_10542052	F033383	MNILHWMKKENSGLARTTLELAIYEEKQGHTAVIRQPQDEKPIYGTITDIDVDCIHSQIGTTAIHERRPKIMWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK
Ga0208958_1064632	Ga0208958_10646321	F057792	MASTARELHIASINALLVKHGANLDRYGMYHIGNYKFDTRAVNLKIFSGKTKIKSTPMMKVTLEALERSLKIY
Ga0208958_1082307	Ga0208958_10823072	F071379	MPDTFPMPPRSCMALALAFALAGCGSNALPKPETPSIEKRLLDLERRMDRMEARFAVAPPYRNKAEIQAHIQELEAERAELLTRYLPQHPAIQDIDRMLWILGKQLQELE
Ga0208958_1099407	Ga0208958_10994073	F094578	NIMEDKKERPKWLLQRLKSMYFAMHCWKCKKFELPVEEYKQICEDNIQKIIDNLEVKEMTFKDLNNTIKNTSFCKFEKRDFSNSCPIKLRLKPEGFCD
Ga0208958_1137058	Ga0208958_11370582	F071896	IDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTK
Ga0208958_1140742	Ga0208958_11407421	F019877	LRPLTRLQVWRIVKAASRRANVQVLALRDSKDGKAGEPAPIHPHLFRHARIRQTLRTSKSLPLVQRQAGWSRLQMAYLTMGDEEARELMRDVAE
Ga0208958_1158948	Ga0208958_11589482	F091086	MQDIINTIKISNNPKEVKQILKSLKIKEVIKVANGLNVKIRGNENKTEIISNIILEIIKYKGDE

Scaffold ID

Protein ID

Family

Sequence

Ga0208958_1002223

Ga0208958_100222335

F094578

WPLQRLKGMYFAMHCWKCKKFELPMEEYKIRCENNIQKIIDDLNVKEMKFKEFNEIIKNSTFCEFEKRDFSNNCPICKKLDVITTDFN

Ga0208958_1008599

Ga0208958_10085991

F048726

MTNFIGRSLTANQAEQNVELNMAFINLIVNDSASVVTLSFDIASASASGNLMVLKVGEARENIAVPFGKLYYKAAADASA

Ga0208958_1024240

Ga0208958_10242401

F099974

MGAETKELAKVSYVTDTDVSYYEIGEVEGAFQEAQLKDYIKRFGHEKICSQLGYMQFQIWKAVREINGERDSQEGAKDVSCTNAT

Ga0208958_1054205

Ga0208958_10542052

F033383

MNILHWMKKENSGLARTTLELAIYEEKQGHTAVIRQPQDEKPIYGTITDIDVDCIHSQIGTTAIHERRPKIMWMHGEPLSSVGNGISMKAIVDLAPICDAFICMRKEEMSIWSSIKRTYLVPKGVDLEMYHPLPGVTERLSGEPVILYTENWRGQRNPLYLCVAMLEVVKKFPNARLHLFNCPKGPMRETFEALIKHNKWWTFIRTLAGPVKDVNLLYNRGDIVVSGLFPLYARGIEALGAGKAFIGPGYREAGYPWTCNLDPHSMAEAIVSCWEGYSSIDYRKWAEERHDVAETVRQSIDVYKRYLK

Ga0208958_1064632

Ga0208958_10646321

F057792

MASTARELHIASINALLVKHGANLDRYGMYHIGNYKFDTRAVNLKIFSGKTKIKSTPMMKVTLEALERSLKIY

Ga0208958_1082307

Ga0208958_10823072

F071379

MPDTFPMPPRSCMALALAFALAGCGSNALPKPETPSIEKRLLDLERRMDRMEARFAVAPPYRNKAEIQAHIQELEAERAELLTRYLPQHPAIQDIDRMLWILGKQLQELE

Ga0208958_1099407

Ga0208958_10994073

F094578

NIMEDKKERPKWLLQRLKSMYFAMHCWKCKKFELPVEEYKQICEDNIQKIIDNLEVKEMTFKDLNNTIKNTSFCKFEKRDFSNSCPIKLRLKPEGFCD

Ga0208958_1137058

Ga0208958_11370582

F071896

IDPDVKVRIINNSNSRIHWIQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKKVFDSLGILNLKHEDIKLHSELKRMLANLEAEELKEEILKLPDGNKELLAELAISEYSNLKGSVIDTIEDETKVKISLIKEDEKANKENQDKNKTK

Ga0208958_1140742

Ga0208958_11407421

F019877

LRPLTRLQVWRIVKAASRRANVQVLALRDSKDGKAGEPAPIHPHLFRHARIRQTLRTSKSLPLVQRQAGWSRLQMAYLTMGDEEARELMRDVAE

Ga0208958_1158948

Ga0208958_11589482

F091086

MQDIINTIKISNNPKEVKQILKSLKIKEVIKVANGLNVKIRGNENKTEIISNIILEIIKYKGDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025117: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences