3300025065: Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067852 | Gp0122836 | Ga0208015
• Sample Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129410472
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Alt. (m): N/A
  • Depth (m): 900

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F008501	Metagenome	332	Y
F039402	Metagenome / Metatranscriptome	164	Y
F042291	Metagenome	158	Y
F044014	Metagenome	155	Y
F050310	Metagenome	145	Y
F057299	Metagenome / Metatranscriptome	136	Y
F060838	Metagenome / Metatranscriptome	132	Y
F077964	Metagenome	117	Y
F078611	Metagenome	116	Y
F085587	Metagenome	111	Y
F099149	Metagenome / Metatranscriptome	103	Y
F103103	Metagenome	101	Y
F105003	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208015_1000152	Not Available	47871
Ga0208015_1000222	Not Available	36926
Ga0208015_1000340	All Organisms → cellular organisms → Archaea	27586
Ga0208015_1000421	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	23804
Ga0208015_1000553	All Organisms → cellular organisms → Bacteria	18391
Ga0208015_1001561	Not Available	7988
Ga0208015_1002689	Not Available	5162
Ga0208015_1002866	All Organisms → Viruses → Predicted Viral	4908
Ga0208015_1003903	Not Available	3854
Ga0208015_1016184	Not Available	1260
Ga0208015_1020826	Not Available	1043
Ga0208015_1032687	Not Available	742
Ga0208015_1036062	Not Available	688
Ga0208015_1036126	Not Available	687
Ga0208015_1036812	Not Available	677
Ga0208015_1041669	Not Available	615
Ga0208015_1043690	Not Available	592

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208015_1000152	Ga0208015_100015210	F044014	MNEDYKPRFSFEITEEQKFRADKLLDTYGLRKAIFGRILDDVLDIIEEYGGMAIGVMMKGKPREIIPSIKGVEEVGKK
Ga0208015_1000222	Ga0208015_100022255	F103103	MPCVSLPSGKQGVPDGVICGFHPVYEFDGYLFEVHRYHGPTPLRRKDHEPRLNIPAGFWDMWKVFDALPDAAKRACLFKED
Ga0208015_1000340	Ga0208015_100034027	F007072	VENKKGQLTIGDAPNVVLIIGLVFLTMATIAFISEKYGDALTENSTAYNVTQDLESEIGDNTSIAGIVLTISLVGIVLTVLIGIFVGFRGRV
Ga0208015_1000421	Ga0208015_100042112	F078611	MVNRTTINIDKEIRDELNKCKKYKRETYDETLKRLIKDKKRLQKAQ
Ga0208015_1000553	Ga0208015_10005534	F085587	MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHKDTTGRVNVLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLESLESDLMTSFYTGMEDVIFGAGPAASTTSPFPPVSLLWWITATDDSTSENNSEEGFDGFEPVGWSSAGVGGISCTTYEQWRNRTFPYTNVERDDFVEKTINSMDLCQFQPPVQRPDIVDQTRHDWELLTTHSRVAAGRRLLQLGNDNIGDDMAAHSGTVYIRGVPMNWVPAWTNSASANARTDGVILGVNWASFKCYYAQGRQMRKRKAFQHPEMSNVRVRCMDDSVQLVCFNRRSNFRGYCTATVTETA
Ga0208015_1001561	Ga0208015_10015615	F050310	MPNMQAFIVGIVVVGITLVIGIYIAAQIGATMTAGSAERNASDEIVTALSNGTSWITILVVVGFAVIVLGMLTSGLGRAAEGVGPVY
Ga0208015_1002689	Ga0208015_10026895	F008501	MQEMLVKKPAVDLTDLAIGIVVLGIVVSIGATILINVRDTSTANTTAYNLSQDAATGLAEYGNWFDIIVIVGVAAVVLSLIFMAFGGRTGGTGTSY
Ga0208015_1002866	Ga0208015_10028666	F044014	MPDTGEYKPRFSFEITEEQQQRANKLLATYGLRKAIFGRILEDVLDMIDEFGGVAIGVMMSGKLKPRDVISSMKQAEEVGKK
Ga0208015_1003903	Ga0208015_10039039	F105003	MKNENEIGQENYRKLIYFFENKIKVHFKNFDEIFYNGLIIDLDGKKLCMVFKERIRGTLPILLECVNPDSIAEFKEEGE
Ga0208015_1016184	Ga0208015_10161842	F057299	NSMTNTKGEKELKTDWDELTASDSTKAVGHEQTLVAEEGTFVPRRNRVGI
Ga0208015_1020826	Ga0208015_10208264	F042291	MPIFQAYNKRNKAWVKYKFTRRGWKALDVKQKNPKKPFKGIQIRGKRR
Ga0208015_1032687	Ga0208015_10326871	F077964	MKKLLIITAIIFLLIPAMALAKTAESRTSPPTIQKIAPKTYYYNYNIQEIQKVPEGGGEAETFYQYNYVTIKGKPTKLKVQQAIAEASSSDDTAIVEEVAANRTIALERLANISAMTYAQINTHIENTFGN
Ga0208015_1036062	Ga0208015_10360623	F044014	MTDEDYRPRFSFEITEEQKQRADKLLDTYGLRKAIFGKVLDDILDLIEDYGGIAIGIMMSGKSKPRDVIPLMKRAEEVGER
Ga0208015_1036126	Ga0208015_10361261	F039402	MSLTDYSDLEQEISDAPEPKILARGSEVKARIIAVRSGVSDKNNAKWYQPTFDVPDDPMVVEFNDFFWDLADRDKIDPKQVQRGLHKFQKFATAFGIDYSRPFDWETDLIGLEGWVILGV
Ga0208015_1036812	Ga0208015_10368122	F060838	MTMQYVLPTEEQKELMQKFRDKYETLYGELKELEASRGLSLALTKLEESAFWLNKSITKN
Ga0208015_1041669	Ga0208015_10416691	F039402	MLTDYSDLEKEIAEAPEPKILPRGTEVKARIIGVREGISEKNDAQWYQPVFDVPAEPLVLEFNGFLWDLKDRDKLSPKMAARALSDFHKFAAAFNLDYSKPFDWVDDLIGLEGWVILGVKKSDEYGDQNTISKYVAGK
Ga0208015_1043690	Ga0208015_10436901	F099149	MLVGVLISIMIAIVVGVNLVPSIVEAVNTASNTPNAATGLDGMLDVLEYVYVAVILLGAVAWIGGQS