Metagenome / Metatranscriptome Family F099149

Overview

Basic Information

• Family ID: F099149
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 66 residues
• Representative Sequence: MLVGVLISIMISIVVGVSLVPTIVSAINTAKNTPNAPTGLSGLLDVLAYVFVAVILLGAVAWIGGQG
• Number of Associated Samples: 50
• Number of Associated Scaffolds: 93

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 77.45 %
• % of genes near scaffold ends (potentially truncated): 13.59 %
• % of genes from short scaffolds (< 2000 bps): 83.50 %
• Associated GOLD sequencing projects: 44
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (93.204 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (30.097 % of family members)
• Environment Ontology (ENVO): Unclassified (34.951 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (31.068 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 57.89%
  β-sheet: 0.00%
  Coil/Unstructured: 42.11%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 93 Family Scaffolds
PF01844	HNH	1.08
PF00004	AAA	1.08

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
All Organisms	root	All Organisms	6.80 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Viruses	superkingdom	All Organisms → Viruses	4.85 %
cellular organisms	root	All Organisms → cellular organisms	1.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.97 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.97 %
Dehalococcoidales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales	0.97 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Candidatus Magnetobacterium	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium	0.97 %
Dehalococcoidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae	0.97 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Dehalococcoides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides	0.97 %
Candidatus Magnetobacterium casensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis	0.97 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	4.85 %
Dehalococcoides mccartyi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	0.97 %
Candidatus Magnetobacterium casensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis	0.97 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001580|Draft_10101961	Not Available	1511
3300001580|Draft_10101961	Not Available	1511
3300003680|Ga0003069J53074_1025572	Not Available	683
3300004239|Ga0066650_10126958	Not Available	1318
3300004481|Ga0069718_10036901	Not Available	772
3300004481|Ga0069718_15922769	Not Available	7556
3300004481|Ga0069718_15922769	Not Available	7556
3300005645|Ga0077109_1027384	Not Available	2212
3300005915|Ga0075122_10061813	Not Available	1537
3300005918|Ga0075116_10087404	Not Available	1243
3300005918|Ga0075116_10149327	Not Available	901
3300005935|Ga0075125_10123190	Not Available	1106
3300005935|Ga0075125_10128916	Not Available	1076
3300005935|Ga0075125_10320113	Not Available	611
3300006733|Ga0098068_1017929	Not Available	1600
3300008255|Ga0100403_1077477	Not Available	1342
3300009488|Ga0114925_10540134	Not Available	820
3300009488|Ga0114925_10753022	Not Available	698
3300009529|Ga0114919_10063150	Not Available	2726
3300009529|Ga0114919_10136902	Not Available	1767
3300009529|Ga0114919_10430168	Not Available	915
3300009529|Ga0114919_10728139	Not Available	674
3300009529|Ga0114919_10907672	Not Available	594
3300010413|Ga0136851_10521857	Not Available	1183
3300010413|Ga0136851_10907313	Not Available	860
3300011118|Ga0114922_11236137	Not Available	603
3300011340|Ga0151652_11646020	Not Available	702
3300011340|Ga0151652_11646020	Not Available	702
3300013080|Ga0153913_1023008	Not Available	584
(restricted) 3300013127|Ga0172365_10099449	Not Available	1857
(restricted) 3300013127|Ga0172365_10185665	All Organisms → Viruses → Predicted Viral	1279
(restricted) 3300013127|Ga0172365_10185665	All Organisms → Viruses → Predicted Viral	1279
(restricted) 3300013127|Ga0172365_10186646	Not Available	1275
(restricted) 3300013127|Ga0172365_10199529	Not Available	1224
(restricted) 3300013127|Ga0172365_10248080	Not Available	1074
(restricted) 3300013127|Ga0172365_10272706	Not Available	1014
(restricted) 3300013127|Ga0172365_10645937	Not Available	602
(restricted) 3300013128|Ga0172366_10196986	Not Available	1292
(restricted) 3300013128|Ga0172366_10366459	Not Available	882
(restricted) 3300013128|Ga0172366_10575258	Not Available	669
(restricted) 3300013128|Ga0172366_10830561	Not Available	537
(restricted) 3300013129|Ga0172364_10325812	Not Available	1000
(restricted) 3300013129|Ga0172364_10331404	Not Available	989
(restricted) 3300013130|Ga0172363_10255056	All Organisms → Viruses → Predicted Viral	1171
(restricted) 3300013130|Ga0172363_10365982	Not Available	941
(restricted) 3300013130|Ga0172363_10365982	Not Available	941
(restricted) 3300013130|Ga0172363_10588229	Not Available	705
(restricted) 3300013130|Ga0172363_10662468	Not Available	656
(restricted) 3300013133|Ga0172362_10166348	Not Available	1622
(restricted) 3300013133|Ga0172362_10166348	Not Available	1622
(restricted) 3300013133|Ga0172362_10545491	Not Available	792
(restricted) 3300013133|Ga0172362_10725300	Not Available	666
(restricted) 3300013133|Ga0172362_10851141	Not Available	605
3300014204|Ga0172381_10123211	Not Available	2134
3300014204|Ga0172381_10203675	Not Available	1597
3300014204|Ga0172381_10240958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalococcoidales → Dehalococcoidaceae → Dehalococcoides → Dehalococcoides mccartyi	1448
3300014204|Ga0172381_10544347	Not Available	893
3300014205|Ga0172380_10425714	Not Available	991
3300014205|Ga0172380_10425714	Not Available	991
3300014656|Ga0180007_10007963	Not Available	9884
3300014656|Ga0180007_10007963	Not Available	9884
3300014656|Ga0180007_10011063	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium casensis	7929
3300014656|Ga0180007_10100212	Not Available	1938
3300014656|Ga0180007_10169884	Not Available	1403
3300014656|Ga0180007_10445591	Not Available	783
3300017987|Ga0180431_10002387	Not Available	25177
3300017987|Ga0180431_10493114	Not Available	855
3300020171|Ga0180732_1003766	Not Available	7297
3300020171|Ga0180732_1028485	All Organisms → Viruses → Predicted Viral	1969
3300020171|Ga0180732_1028485	All Organisms → Viruses → Predicted Viral	1969
3300020171|Ga0180732_1177804	Not Available	638
3300020171|Ga0180732_1218580	Not Available	566
3300020171|Ga0180732_1270268	Not Available	500
3300023256|Ga0222703_1005104	Not Available	2831
3300024432|Ga0209977_10155455	Not Available	1120
3300024433|Ga0209986_10465654	Not Available	563
3300025018|Ga0210043_1152611	Not Available	629
3300025065|Ga0208015_1043690	Not Available	592
3300025649|Ga0208279_1097572	Not Available	809
3300025697|Ga0208769_1099086	Not Available	859
3300025736|Ga0207997_1085504	Not Available	1076
3300027852|Ga0209345_10391166	Not Available	821
3300027896|Ga0209777_10631212	Not Available	771
3300027896|Ga0209777_10631212	Not Available	771
3300027896|Ga0209777_11006708	Not Available	569
3300028193|Ga0265594_1099981	Not Available	1008
3300028276|Ga0268282_1033622	Not Available	1300
3300028619|Ga0257136_1051647	Not Available	732
3300028620|Ga0257139_1070785	Not Available	571
(restricted) 3300029268|Ga0247842_10400010	Not Available	714
3300031227|Ga0307928_10097297	Not Available	1736
3300031227|Ga0307928_10287136	Not Available	823
3300031565|Ga0307379_10263385	Not Available	1722
3300031565|Ga0307379_11119859	Not Available	660
3300031566|Ga0307378_10231168	Not Available	1794
3300031654|Ga0315549_1348427	Not Available	505
3300031707|Ga0315291_10015347	Not Available	9234
3300031885|Ga0315285_10099754	Not Available	2535
3300031999|Ga0315274_10080036	Not Available	4299
3300031999|Ga0315274_10261062	Not Available	2098
3300032020|Ga0315296_10034605	Not Available	3519
3300032163|Ga0315281_11833130	Not Available	584

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.23%
Engineered	Engineered	7.77%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	89.32%
Solid Waste	Engineered → Solid Waste	5.83%
Terrestrial	Environmental → Terrestrial	2.91%
Wastewater	Engineered → Wastewater	1.94%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	55.34%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	16.50%
Marine	Environmental → Aquatic → Marine	15.53%
Landfill	Engineered → Solid Waste → Landfill	5.83%
Soil	Environmental → Terrestrial → Soil	2.91%
Sediment	Environmental → Aquatic → Sediment	1.94%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.94%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	31.07%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	15.53%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	14.56%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.59%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	5.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.91%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.91%
Clay	Environmental → Terrestrial → Soil → Clay	2.91%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.97%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.97%

Subtype

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	30.10%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	14.56%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	14.56%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	9.71%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.91%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.97%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	30.10%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	12.62%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	9.71%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	6.80%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	5.83%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	4.85%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.91%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.91%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.91%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	1.94%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	1.94%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	1.94%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	1.94%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.94%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.94%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.97%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.97%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.97%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.97%
Brackish Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water	0.97%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001580	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6	Engineered
3300003680	Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 3 (Metagenome Metatranscriptome)	Environmental
3300004239	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all	Environmental
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental
3300005645	Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)	Environmental
3300005915	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB	Environmental
3300005918	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC	Environmental
3300005935	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN	Environmental
3300006733	Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl	Environmental
3300008255	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t	Environmental
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental
3300013080	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome)	Environmental
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental
3300017987	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG	Environmental
3300020171	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG	Environmental
3300023256	Saline water microbial communities from Ace Lake, Antarctica - #1506	Environmental
3300024432	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)	Environmental
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental
3300025018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)	Environmental
3300025065	Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes)	Environmental
3300025649	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKM (SPAdes)	Environmental
3300025697	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC (SPAdes)	Environmental
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental
3300027852	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 (SPAdes)	Environmental
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental
3300028193	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m	Environmental
3300028276	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m	Environmental
3300028619	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m (Metagenome Metatranscriptome)	Environmental
3300028620	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)	Environmental
3300029268 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m	Environmental
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental
3300031654	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-200	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_101019613	3300001580	Hydrocarbon Resource Environments	MLVGVLVSIMISIVVGVSLVPTILSAINTAKNTAGIPTGLSGLLDVLSYVFVAIILLSAVSWIGGNQ*
Draft_101019614	3300001580	Hydrocarbon Resource Environments	MLVGVLVSIMISIVVGVSLVPTILSAINTAKNTDGIPTGLSGLLDVLSYVFVAIILLSAVSWIGGNQ*
Ga0003069J53074_10255721	3300003680	Groundwater	MLVGVLITIMISIVVGLALTPTVITAVNTAKNPTGVTLPTGLSGMLDVVSYVFVAIILLGAVAWIGGQS*
Ga0066650_101269586	3300004239	Groundwater	MLVGVLISIMISIVVGVNLVPSIVESINIAKNTPNAPTGMSGLLDVLVYVFIAVILLGAVAWIGGQT*
Ga0069718_100369012	3300004481	Sediment	VLVGVLISIMISIVVGVNLLPTIITSLNAARAQANLVTGFTGLGGLIEVLAYVYVAVILLGAVAWIGGQQ*
Ga0069718_159227698	3300004481	Sediment	MLVGVLISIMISIVVGVNLLPTIVTSIETVNEQVADVEGFEGLSGLTTVLAYVYIAVILLGAVAWIGGQG*
Ga0069718_159227699	3300004481	Sediment	VLVGVLISIMISIVVGINLLPTIVTSIETVNEQVADIEGFEGLSGLTTVLAYVYIAVILLGAVAWIGGQG*
Ga0077109_10273844	3300005645	Brackish Water	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG*
Ga0075122_100618132	3300005915	Saline Lake	MLVGVLISIMISIVVGVSLVPTILTSINTAEVQVASFSGFAGLGGLMQVLAYVYIAVILLGAVAWIGGQT*
Ga0075116_100874043	3300005918	Saline Lake	MLVGVLISIMISIVVGVNLIPSIVESINTAKNTANAPTGMSGLLDVLVYVYIAVILLGAVAWIGGQS*
Ga0075116_101493271	3300005918	Saline Lake	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQG*
Ga0075125_101231901	3300005935	Saline Lake	MLVGVLISIMISIVVGVSLVPTIVSSINTAKNTPNAPTGLSGLLDVLTYVFVAVILLGAVAWIGGQG*
Ga0075125_101289163	3300005935	Saline Lake	VGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQG*
Ga0075125_103201131	3300005935	Saline Lake	MLVGVLISIMISIVVGVNLIPSIVTSINTAKATANAPSGMSGLLDVLVYVYIAVILLGAVAWIGGQG*
Ga0098068_10179292	3300006733	Marine	MLVGVLISIMIAIVVGVNLVPSIVEAVNTASNTPNAATGLDGMLDVLEYVYVAVILLGAVAWIGGQS*
Ga0100403_10774772	3300008255	Aquifer	MISIVVGVSLVPTIVESINTAKNTANAPTGMSGLLDVLVYVYIAVILLGAVAWIGGQG*
Ga0114925_105401342	3300009488	Deep Subsurface	MISIVVGVSLVPTIVDSINTAKNTPNAPAGLDGLLDVLVYVFVAVILLGAVAWIGGQT*
Ga0114925_107530222	3300009488	Deep Subsurface	MLVGVLISIMISIVVGVSLVPTIIDSINTAKNTANAPAGLSGLLDVLSYVFVAVILLGAVAWIGGQG*
Ga0114919_100631505	3300009529	Deep Subsurface	LLVGVLVSIMISIVVGVSLVPTIISAINTAKNTPEIPTGLSGLLDVLAYVFVAIILLSAVSWIGGNS*
Ga0114919_101369023	3300009529	Deep Subsurface	MLVGVLISIMISIVVGVNLIPTIITSINTARAQAAAVEGFSGLGGLMEVLAYVYIAVILLGAVAWIGGQT*
Ga0114919_104301681	3300009529	Deep Subsurface	MLVGVLISIMISIVVGVNLVPSIVTSINTAKNTAGAPTGLDGLLDVLSYVYVAVILLGAVAWIGGQS*
Ga0114919_107281391	3300009529	Deep Subsurface	MLVGVLITIMISIVVGVSLIPTIVASVSTAKNTTGLPEGMSGLLDVLSYVFVAVILLSAVAWIGGQG*
Ga0114919_109076722	3300009529	Deep Subsurface	MLVGVLITIMISIVVGVSLVPTIVASIQTAKNTSGIPTGLSGLLDVLSYVFVAVILLSAVAWIGGQT*
Ga0136851_105218572	3300010413	Mangrove Sediment	MLVGVLISIMISIVVGVNLIPSIVESINTAKETPNAPTGMDGLLDVLVYVYIAVILLGAVAWIGGQS*
Ga0136851_109073132	3300010413	Mangrove Sediment	MLVGVLISIMISIVVGVSLVPTIVSSICTAKNTDNAPTGLSGLLDVLVYVFVAVILLGAVAWIGGQA*
Ga0114922_112361371	3300011118	Deep Subsurface	MLVGVLISIMISIVVGVSLIPTIIDSINTAKATANAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQG*
Ga0151652_116460201	3300011340	Wetland	MLVGVLISIMISMVVGVSLLPSIISAINAANVQVTAVGGFTGLSGLTNVLAYVYVAVILLGAVAWIGGQG*
Ga0151652_116460202	3300011340	Wetland	MISMVVGVSLLPSIISAINAANVQVTAVGGFTGLNGLTNVLAYVYVAVILLGAVAWIGGQG*
Ga0153913_10230081	3300013080	Freshwater Wetlands	MIAIVVGVNLVPTIVSAINTAATSPTVAATMPGLAGLLQTLAYVYVAVILLGAVAWIGGQS*
(restricted) Ga0172365_100994491	3300013127	Sediment	MLVGVLVSIMISIVVGVSLVPTIVSAINTAKSTAGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172365_101856651	3300013127	Sediment	ISIMISIVVGINLLPTIVTSIQTVNEQVENVTGFGGLAGLTTVLAYVYVAVILLGAVAWIGGQA*
(restricted) Ga0172365_101856652	3300013127	Sediment	MISIVVGINLLPSIVTSIQTVNEQVENVTGFAGLAGLTTVLAYVYVAVILLGAVAWIGGQA*
(restricted) Ga0172365_101866462	3300013127	Sediment	MLVGVLISIMISIVVGVNLVPTIISSINTAKTQAEAIEGFSGLGGLMEVLAYVYIAVILLGAVAWIGGQT*
(restricted) Ga0172365_101995293	3300013127	Sediment	MLVGVLVSIMISIVVGVSLVPTIVSAINTAKNTDGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172365_102480803	3300013127	Sediment	MISIVVGVNLVPTILTRINTARTEATAVEGFSGLGGLMQVLAYVYIAVILLGAVAWIGGQT*
(restricted) Ga0172365_102727062	3300013127	Sediment	VEEVKMLVGVLVSIMISIVVGVSLVPTIVSAINTAKNTDGIPTGLSGLLDVLSYVFVAIILL
(restricted) Ga0172365_106459371	3300013127	Sediment	MLVGVLISIMISIVVGVNLVPTIVDAINTASQNAVVQSEMAGLEGLLETLAYVYVAVILLGAVAWI
(restricted) Ga0172366_101969862	3300013128	Sediment	MLVGVLISIMISIVVGVNLVPTIISSINTAKTQAEAIEGFSGLGGLMEVLAYVYIAVILLGAVAWIGGQS*
(restricted) Ga0172366_103664592	3300013128	Sediment	MLVGVLVSIMISIVVGVSLVPTIVSAINTAKNTGGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172366_105752582	3300013128	Sediment	MLVGVLISIMISIVVGVNLVPTIVDAINTASQNAVVQSEMAGLEGLLETLAYVYVAVILLGAVAWIGGQT*
(restricted) Ga0172366_108305611	3300013128	Sediment	MLVGVLISIMISIVVGINLLPSIVTSIQTVNEQVENVTGFAGLAGLTTVLAYVYVAVILLGAVAWIGGQA*
(restricted) Ga0172364_103258122	3300013129	Sediment	MLVGVLVSIMISIVVGVSLVPTIVSAINTAKNTDGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQS*
(restricted) Ga0172364_103314041	3300013129	Sediment	MLVGVLISIMISIVVGVNLVPTIISSINTAKTQAAAVEGFSGLGGLMEVLAYVYIAVILLGAVAWIGGQT*
(restricted) Ga0172363_102550562	3300013130	Sediment	MISIVVGVSLVPTIVSAINTAKSTAGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172363_103659821	3300013130	Sediment	LLVGVLVSIMISIVVGVSLVPTIITAVNTAKSTTGLPTGLSGLLDVLSYVFVAIILLSSVAWIGGQG*
(restricted) Ga0172363_103659822	3300013130	Sediment	MISIVVGVSLVPTIISAINTAKSTAGMPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172363_105882292	3300013130	Sediment	MLVGVLVSIMISIVVGVSLVPTIITAINTAKNTEGLPDGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172363_106624681	3300013130	Sediment	MLVGVLISIMISIVVGVNLVPTIVDAINTASQDAVVQSEMAGLEGLLETLAYVYVAVILLGAVAWIGGQT*
(restricted) Ga0172363_108447672	3300013130	Sediment	MLVGVLISIMISIVVGVNLVPTIITSINTASEQANAISGFSGLSGLMQVLALYVDSAFIGQLVK
(restricted) Ga0172362_101663484	3300013133	Sediment	MISIVVGVSLVPTIITAVNTAKSTAGLPAGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
(restricted) Ga0172362_101663485	3300013133	Sediment	MLVGVLVSIMISIVVGVNLVPTIITAINTTKSTPGLPTGLSGLLDVLSYVFVAIILLSSVAWIGGQG*
(restricted) Ga0172362_105454913	3300013133	Sediment	MLVGVLVSIMISIVVGVSLVPTIITAINTAKNTEGLPDGLSGLLDVLSYVFVAIILLSAVAWI
(restricted) Ga0172362_107253001	3300013133	Sediment	MISIVVGVSLVPTIVSAINTAKNTPEAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG*
(restricted) Ga0172362_108511412	3300013133	Sediment	LLVGVLVSIMISIVVGVSLVPTIVSSINTAKSTPGVPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG*
Ga0172381_101232112	3300014204	Landfill Leachate	MLVGVLISVMLAIVVGLSLMPTVVTSANTAKNTANIPSGLGGMIDVISYVFVAIILLGAVAWIGGGR*
Ga0172381_102036754	3300014204	Landfill Leachate	MITIMLSIVVGLSLLPTVVTSANTAKNTAGIPTGLGGMIDVISYVFVAIILMGAVAWIGGQR*
Ga0172381_102409581	3300014204	Landfill Leachate	MLVGVLITIMISIVVGLALTPTVITAVNTAKNPSGVTLPTGLSGMLDVVSYVFVAIILLGAVAWIGGQSQ*
Ga0172381_105443471	3300014204	Landfill Leachate	MLVGVLISVMLAIVVGLSLMPTVVTSANTAKNTENIPSGLGGMIDVISYVFVAIILLGAVAWIGGGR*
Ga0172380_104257141	3300014205	Landfill Leachate	SIVVGLALVPTVVTAANTAKNPSGVTLPTGLSGMIDVVSYVFVAIILLGAVAWIGGQQ*
Ga0172380_104257142	3300014205	Landfill Leachate	MLVGVMISIMLAVVVGLSLLPTVVTSANTAKNTAGIPTGLSGMIDVISYVFVAIILLGAVAWIGGGR*
Ga0180007_1000796310	3300014656	Groundwater	MLVGVLITIMISIVVGVSLVPTIVSSINSARIYVYGNGTAAVITGNATGAYQGVPNAPVGLGGLLDTLSYVFVAVILLGAVSWIGGQG*
Ga0180007_1000796311	3300014656	Groundwater	MLVGVLISVMISIVVGVSLVPTIVSSVNSTKVLLAAMPAGSAPVGLGGLLDTLSYVFVAVILLGAVSWIGGQG*
Ga0180007_100110637	3300014656	Groundwater	MLVGVLISIMISIVVGVSLVPTIVDSINTAKNTPNAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQA*
Ga0180007_101002122	3300014656	Groundwater	MLVGVLISIMISIVVGVNLIPSIVTSINTAKNTANAPSGMSGLLDVLVYVYIAVILLGAVAWIGGQGN*
Ga0180007_101698842	3300014656	Groundwater	MISIVVGVSLVPTIVESINTSVATIDASTHTITGLTGLLDVLAYVFVAVILLGAVAWIGGQG*
Ga0180007_104455911	3300014656	Groundwater	MLVGVLISIMISIVVGVSLVPSIISSITEAKNTSGMPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG*
Ga0180431_1000238744	3300017987	Hypersaline Lake Sediment	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTDNAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG
Ga0180431_104931141	3300017987	Hypersaline Lake Sediment	MLVGVLISIMISIVVGVNLIPSIVESVNTAKNTANAPTGMSGLLDVLVYVYIAVILLGAVAWIGGQG
Ga0180732_10037669	3300020171	Groundwater	MISIVVGVSLVPTIINSIQTAKGTAGAPAGVDGLLDVLVYVFIAVILLGAVAWIGGQA
Ga0180732_10284853	3300020171	Groundwater	VLISVMISIVVGVSLVPTIVTTTNTTKALLAAMPAGSAPGGLGGLLDTLSYVFVAVILLGAVAWIGGQQG
Ga0180732_10284854	3300020171	Groundwater	VLVGVLISIMISIVVGVSLVPTIVSSINTAKVLIASTPNGPAGLGGLLDTLSYVFVAVILLGAVAWIGGQQG
Ga0180732_11778041	3300020171	Groundwater	MISIVVGVSLVPTIVASINTAKATPNAPTGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0180732_12185801	3300020171	Groundwater	MLVGVLISIMISIVVGVNLIPSIVTSINTAKHTADAPTGMSGLLDVLVYVYIAVILLGAVAWIGGQGN
Ga0180732_12702682	3300020171	Groundwater	MLVGVLISIMISIVVGVSLVPTIVSSINTARATIAATPNAPTGLAGLLDVLSYVFVAVILLGAVAWIGGQA
Ga0222703_10051043	3300023256	Saline Water	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0209977_101554552	3300024432	Deep Subsurface	VLVGVLISIMISIVVGVSLVPTIVDSINTAKNTPNAPTGLSGLLDVLVYVFVAVILLGAVAWIGGQA
Ga0209986_104656541	3300024433	Deep Subsurface	MLVGVLITIMISIVVGVSLIPTIVASVSTAKNTTGLPEGMSGLLDVLSYVFVAVILLSAVAWIGGQG
Ga0210043_11526111	3300025018	Aquifer	GVLISIMISIVVGVNLVPSIVESINIAKNTPNAPTGMSGLLDVLVYVFIAVILLGAVAWIGGQT
Ga0208015_10436901	3300025065	Marine	MLVGVLISIMIAIVVGVNLVPSIVEAVNTASNTPNAATGLDGMLDVLEYVYVAVILLGAVAWIGGQS
Ga0208279_10975722	3300025649	Saline Lake	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPAGLSGLLDVLAYVFVAVILLGAVAW
Ga0208769_10990862	3300025697	Saline Lake	MLVGVLISIMISIVVGVSLVPTILTSINTAEVQVASFSGFAGLGGLMQVLAYVYIAVILLGAVAWIGGQT
Ga0207997_10855041	3300025736	Saline Lake	VGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPAGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0209345_103911664	3300027852	Marine	VLVGVLISIMISIVVGVNLVPTIITSINTARGQAAAVEGFSGLGGLMEVLAYVYIAVILLGAVAWIGGQT
Ga0209777_106312121	3300027896	Freshwater Lake Sediment	MISIVVGVNLIPSIIEAINTAKNTANAPTGMSGLLDTLVYVYIAVILLGAVSWIGGQS
Ga0209777_106312122	3300027896	Freshwater Lake Sediment	MISIVVGVNLIPSIISAINTAKNTANAPTGMSGLLDTLVYVYIAVILLGAVSWI
Ga0209777_110067081	3300027896	Freshwater Lake Sediment	VLVGVLISIMISIVVGVSLVPTIVSSINTAKVTLTETPNAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQA
Ga0265594_10999811	3300028193	Saline Water	LISIMISIVVGVSLIPTIVDSINTAKNTANAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG
Ga0268282_10336222	3300028276	Saline Water	MLVGVLISIMISIVVGVSLIPTIVDSINTAKNTANAPTGLSGLLDVLSYVFVAVILLGAVAWIGGQG
Ga0257136_10516473	3300028619	Marine	MLVGVLVSIMISIVVGVSLVPTIVSAINTAKNTPGIPTGLSGLLDVLSYVFVAIILLSAVAWIGGQG
Ga0257139_10707851	3300028620	Marine	MLVGVLISIMISIVVGVNLIPTILTSINTAKAQATAIGGFSGLSGLMEVLAYVYVAVILLGAVAWIGGQT
(restricted) Ga0247842_104000103	3300029268	Freshwater	MLVGVLISIMISIVVGVSLVPTIVSSINTSKITIAATPNAPTGLTGLLDVLSYVFVAVILLGAVAWIGGQA
Ga0307928_100972973	3300031227	Saline Water	MLVGVLISIMISIVVGVSLVPTIVSSINTAKNTPNAPTGLNGLLDVLTYVFVAVILLGAVAWIGGQG
Ga0307928_102871363	3300031227	Saline Water	MLVGVLISIMISIVVGVNLIPSIVESINTAKNTANAPTGMSGLLDVLVYVYIAVILLGAVAWIGGQS
Ga0307379_102633851	3300031565	Soil	MLVGVLISIMISIVVGVSLVPTIIASVSTAKNTTGIPSGLSGLLDVLSYVFVAVILLGAVAWIGGQN
Ga0307379_111198592	3300031565	Soil	MLVGVLISIMISIVVGVSLVPTIIASISTAKNTTGIPSGLSGLLDVLSYVFVAVILLGAVAWIGGQS
Ga0307378_102311685	3300031566	Soil	MLVGVLISIMISIVVGVSLVPTIIASVSTAKNTTGIPSGLSGLLDVLSYVFVAVILLGAVAWIGGQS
Ga0315549_13484271	3300031654	Salt Marsh Sediment	MLVGVLISIMISIVVGINLLPTIVTSIGTVNTAVTAANISGLDGLSGLTTVLAYVYVAVILL
Ga0315291_1001534711	3300031707	Sediment	MISIVVGVSLVPTIVSAINTAKNTPNAPTGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0315285_100997542	3300031885	Sediment	MLVGVLISIMISIVVGVSLVPTIVSAINTAKNTPNAPTGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0315274_100800363	3300031999	Sediment	VVGVSLVPTIVSAINTAKNTPNAPTGLSGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0315274_102610624	3300031999	Sediment	MLVGVLISIMISIVVGVSLVPTIVSAINTAKATPNAPTGLNGLLDVLAYVFVAVILLGAVAWIGGQG
Ga0315296_100346053	3300032020	Sediment	MLVGVLISIMISIVVGVNLLPTIVASIETVKEQTDAIEGFEGLGGLMTVLAYVYIAVILLGAVAWIGGQT
Ga0315281_118331302	3300032163	Sediment	MLVGVMITIMIGIVVGLALTPTVVISANTAKNTAGIPTGLDGMIDVVSYVFVSVILLGAVAWIGGGR