NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105003

Metagenome Family F105003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105003
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 78 residues
Representative Sequence MTNEIGQKVYRKLIYFFENKIKIHFKDLDNIFYNGLILDLNEEKLTMVLRERVRGELPILLEFINPDSISKFKEEGG
Number of Associated Samples 56
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 26.00 %
% of genes near scaffold ends (potentially truncated) 19.00 %
% of genes from short scaffolds (< 2000 bps) 67.00 %
Associated GOLD sequencing projects 47
AlphaFold2 3D model prediction Yes
3D model pTM-score0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (85.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface
(26.000 % of family members)
Environment Ontology (ENVO) Unclassified
(30.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
(34.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.00%    β-sheet: 28.57%    Coil/Unstructured: 51.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.80
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.38.1.2: Pleiotropic translational regulator Hfqd1kq1a_1kq10.66532
b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNPd4f7ub_4f7u0.66433
b.38.1.0: automated matchesd4c92d_4c920.66273
b.38.1.0: automated matchesd4f7ug_4f7u0.66135
b.38.1.0: automated matchesd4f7uf_4f7u0.65785


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01844HNH 6.00
PF09250Prim-Pol 4.00
PF01807zf-CHC2 2.00
PF08241Methyltransf_11 2.00
PF13597NRDD 2.00
PF00145DNA_methylase 2.00
PF01555N6_N4_Mtase 2.00
PF00412LIM 2.00
PF05063MT-A70 2.00
PF08761dUTPase_2 1.00
PF05707Zot 1.00
PF02195ParBc 1.00
PF13412HTH_24 1.00
PF13385Laminin_G_3 1.00
PF06054CoiA 1.00
PF11523DUF3223 1.00
PF02572CobA_CobO_BtuR 1.00
PF08706D5_N 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4725N6-adenosine-specific RNA methylase IME4Translation, ribosomal structure and biogenesis [J] 4.00
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 2.00
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 2.00
COG0863DNA modification methylaseReplication, recombination and repair [L] 2.00
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 2.00
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 2.00
COG2109ATP:corrinoid adenosyltransferaseCoenzyme transport and metabolism [H] 1.00
COG4128Zona occludens toxin, predicted ATPaseGeneral function prediction only [R] 1.00
COG4469Competence protein CoiA, contains predicted nuclease domainGeneral function prediction only [R] 1.00
COG4508Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamilyNucleotide transport and metabolism [F] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.00 %
All OrganismsrootAll Organisms15.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001335|ML8_10021269Not Available2976Open in IMG/M
3300002097|C687J26620_1001167Not Available5767Open in IMG/M
3300005253|Ga0073583_1029127Not Available10848Open in IMG/M
3300005253|Ga0073583_1123139Not Available2810Open in IMG/M
3300005613|Ga0074649_1003244All Organisms → cellular organisms → Archaea → DPANN group16381Open in IMG/M
3300005663|Ga0073582_108660Not Available4417Open in IMG/M
3300005915|Ga0075122_10097732Not Available1137Open in IMG/M
3300005918|Ga0075116_10029381Not Available2329Open in IMG/M
3300005918|Ga0075116_10318038Not Available563Open in IMG/M
3300005935|Ga0075125_10080185Not Available1426Open in IMG/M
3300005935|Ga0075125_10097376Not Available1273Open in IMG/M
3300005935|Ga0075125_10194521Not Available836Open in IMG/M
3300005935|Ga0075125_10232060Not Available749Open in IMG/M
3300005935|Ga0075125_10307077Not Available628Open in IMG/M
3300005935|Ga0075125_10357131Not Available569Open in IMG/M
3300006733|Ga0098068_1001318Not Available9008Open in IMG/M
3300006733|Ga0098068_1084383Not Available542Open in IMG/M
3300007537|Ga0102934_1058519Not Available1966Open in IMG/M
3300008416|Ga0115362_101230787Not Available506Open in IMG/M
3300008516|Ga0111033_1031191Not Available1517Open in IMG/M
3300009149|Ga0114918_10187365Not Available1210Open in IMG/M
3300009149|Ga0114918_10195431Not Available1178Open in IMG/M
3300009149|Ga0114918_10281452Not Available935Open in IMG/M
3300009149|Ga0114918_10481760Not Available666Open in IMG/M
3300009149|Ga0114918_10619362Not Available571Open in IMG/M
3300009149|Ga0114918_10631474Not Available565Open in IMG/M
3300009488|Ga0114925_10003407Not Available8252Open in IMG/M
3300009488|Ga0114925_10779851Not Available686Open in IMG/M
3300009529|Ga0114919_10036556Not Available3673Open in IMG/M
3300009529|Ga0114919_10077567Not Available2427Open in IMG/M
3300009529|Ga0114919_10391793Not Available966Open in IMG/M
3300009529|Ga0114919_10414991Not Available935Open in IMG/M
3300009529|Ga0114919_10493644Not Available845Open in IMG/M
3300009529|Ga0114919_10695905Not Available692Open in IMG/M
3300009529|Ga0114919_10752989Not Available661Open in IMG/M
3300009529|Ga0114919_11173235Not Available514Open in IMG/M
3300009622|Ga0105173_1023169Not Available951Open in IMG/M
3300009788|Ga0114923_10043020Not Available3096Open in IMG/M
3300009788|Ga0114923_10086225Not Available2183Open in IMG/M
3300011118|Ga0114922_10360700Not Available1209Open in IMG/M
3300011118|Ga0114922_11044097Not Available663Open in IMG/M
3300013099|Ga0164315_10000682All Organisms → cellular organisms → Archaea24206Open in IMG/M
3300013099|Ga0164315_10048804All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon3382Open in IMG/M
3300013103|Ga0164318_10452178Not Available1115Open in IMG/M
(restricted) 3300013130|Ga0172363_10689463Not Available641Open in IMG/M
(restricted) 3300013133|Ga0172362_10465970Not Available871Open in IMG/M
(restricted) 3300013137|Ga0172375_10042636Not Available4564Open in IMG/M
3300014656|Ga0180007_10056377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2783Open in IMG/M
3300014656|Ga0180007_10135055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Mameliella → unclassified Mameliella → Mameliella sp.1612Open in IMG/M
3300014656|Ga0180007_10330034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Mameliella → unclassified Mameliella → Mameliella sp.938Open in IMG/M
3300017963|Ga0180437_10126440All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon2107Open in IMG/M
3300017963|Ga0180437_11103750Not Available566Open in IMG/M
3300017971|Ga0180438_10042685Not Available4417Open in IMG/M
3300017971|Ga0180438_10076948Not Available2972Open in IMG/M
3300017987|Ga0180431_10032039All Organisms → cellular organisms → Bacteria5050Open in IMG/M
3300017991|Ga0180434_11232736All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium559Open in IMG/M
3300018080|Ga0180433_10225730Not Available1511Open in IMG/M
3300022858|Ga0222679_1025717Not Available1109Open in IMG/M
3300022890|Ga0222667_1040844Not Available902Open in IMG/M
3300023246|Ga0222682_1002624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Mameliella → unclassified Mameliella → Mameliella sp.4010Open in IMG/M
3300023256|Ga0222703_1005458Not Available2734Open in IMG/M
3300024262|Ga0210003_1093425Not Available1384Open in IMG/M
3300024265|Ga0209976_10030257Not Available2824Open in IMG/M
3300024432|Ga0209977_10032611Not Available2511Open in IMG/M
3300024433|Ga0209986_10118867Not Available1408Open in IMG/M
3300024433|Ga0209986_10161885Not Available1147Open in IMG/M
3300024433|Ga0209986_10362864Not Available669Open in IMG/M
3300025065|Ga0208015_1003903Not Available3854Open in IMG/M
3300025087|Ga0208957_1004020Not Available5455Open in IMG/M
3300025736|Ga0207997_1215191Not Available573Open in IMG/M
3300026103|Ga0208451_1013189Not Available872Open in IMG/M
(restricted) 3300027865|Ga0255052_10385201Not Available686Open in IMG/M
(restricted) 3300027881|Ga0255055_10033040Not Available2929Open in IMG/M
3300027901|Ga0209427_10149194Not Available2013Open in IMG/M
(restricted) 3300028581|Ga0247840_10131332Not Available1553Open in IMG/M
3300028883|Ga0272443_10571021Not Available518Open in IMG/M
3300031227|Ga0307928_10023277Not Available4226Open in IMG/M
3300031227|Ga0307928_10097662Not Available1732Open in IMG/M
3300031227|Ga0307928_10107997Not Available1618Open in IMG/M
3300031227|Ga0307928_10108646Not Available1612Open in IMG/M
3300031227|Ga0307928_10401145Not Available643Open in IMG/M
3300031337|Ga0307430_1131521Not Available652Open in IMG/M
3300031379|Ga0307434_1155472Not Available623Open in IMG/M
3300031539|Ga0307380_10054048Not Available4397Open in IMG/M
3300031539|Ga0307380_10438750All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1166Open in IMG/M
3300031539|Ga0307380_11010028Not Available663Open in IMG/M
3300031565|Ga0307379_10406123All Organisms → cellular organisms → Bacteria1304Open in IMG/M
3300031565|Ga0307379_10840954Not Available803Open in IMG/M
3300031565|Ga0307379_11637609Not Available505Open in IMG/M
3300031566|Ga0307378_10407926Not Available1246Open in IMG/M
3300031578|Ga0307376_10020102All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum borinquense5261Open in IMG/M
3300031578|Ga0307376_10231095Not Available1253Open in IMG/M
3300031578|Ga0307376_10287633Not Available1101Open in IMG/M
3300031578|Ga0307376_10549797Not Available741Open in IMG/M
3300031601|Ga0307992_1015202All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon3655Open in IMG/M
3300031669|Ga0307375_10782615Not Available541Open in IMG/M
3300031673|Ga0307377_10227311Not Available1440Open in IMG/M
3300031673|Ga0307377_10473552All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon917Open in IMG/M
3300031673|Ga0307377_10598087Not Available789Open in IMG/M
3300031673|Ga0307377_10607584Not Available781Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface26.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil16.00%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake9.00%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water9.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment7.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater5.00%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment4.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment3.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.00%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.00%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic2.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.00%
Wetlands BenthicEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.00%
Pond SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001335Wetlands benthic microbial communities from British Columbia, Canada - ML8EnvironmentalOpen in IMG/M
3300002097Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1EnvironmentalOpen in IMG/M
3300005253Marine sediment microbial community near Loki's castleEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005663Marine sediment microbial community near Loki's castleEnvironmentalOpen in IMG/M
3300005915Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKBEnvironmentalOpen in IMG/M
3300005918Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKCEnvironmentalOpen in IMG/M
3300005935Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKNEnvironmentalOpen in IMG/M
3300006733Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsClEnvironmentalOpen in IMG/M
3300007537Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MGEnvironmentalOpen in IMG/M
3300008416Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12BEnvironmentalOpen in IMG/M
3300008516Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009488Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300009788Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaGEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300013099Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cmEnvironmentalOpen in IMG/M
3300013103Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cmEnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300013133 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2EnvironmentalOpen in IMG/M
3300013137 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1mEnvironmentalOpen in IMG/M
3300014656Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaGEnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300022858Saline water microbial communities from Ace Lake, Antarctica - #939EnvironmentalOpen in IMG/M
3300022890Saline water microbial communities from Ace Lake, Antarctica - #657EnvironmentalOpen in IMG/M
3300023246Saline water microbial communities from Ace Lake, Antarctica - #1008EnvironmentalOpen in IMG/M
3300023256Saline water microbial communities from Ace Lake, Antarctica - #1506EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024265Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024432Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025065Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes)EnvironmentalOpen in IMG/M
3300025087Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 (SPAdes)EnvironmentalOpen in IMG/M
3300025736Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)EnvironmentalOpen in IMG/M
3300026103Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)EnvironmentalOpen in IMG/M
3300027865 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21EnvironmentalOpen in IMG/M
3300027881 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27EnvironmentalOpen in IMG/M
3300027901Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)EnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300028883Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Acet-12EnvironmentalOpen in IMG/M
3300031227Saline water microbial communities from Ace Lake, Antarctica - #232EnvironmentalOpen in IMG/M
3300031337Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-130EnvironmentalOpen in IMG/M
3300031379Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031601Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ML8_1002126943300001335Wetlands BenthicMTNDKNAHESYRKLLYFFENKIKVHFKDFDEIFYNGLLLDLNENKSTMVLAERVKGIMPFLLENIKPDSIRKMEEERE*
C687J26620_100116753300002097GroundwaterMTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL*
Ga0073583_102912763300005253Marine SedimentMTKDKIANDTYRKLVYFFDNKIKVHFKDFDEIFYNGLIVDLNEEKKTLVLDERIKGMMPILLEFVNPDSIRKFNEVGG*
Ga0073583_112313993300005253Marine SedimentMTNETGQMNYRKLLYFFENKIKVHFKDLDHIFYNGLILDLSETKLTMVLQERIRGNIPILLEFINPNSIQEFKDRGGWE*
Ga0074649_1003244273300005613Saline Water And SedimentMTYDKRGYEAYRKLLYFYENKIRVHFKDFDNIFYNGEIVDLNEEKLVMVFQERIKGVIPILLEFINPDSIVKFEERETSEGGDLE*
Ga0073582_10866053300005663Marine SedimentMTNEKGQEVYRKLLYFFENNLKVHFKDLDKIFYNGIIIDLNESKLTLVLRERVRGTIPILLECINPNSIEEFKEVGE*
Ga0075122_1009773233300005915Saline LakeMTKDKIAKDSYRKLLYFFENKIWVHFKDFDKIFYNGLIIDLNEDKMTMVIQERVRGEFPFLLECVNPNSIAKFEVKGE*
Ga0075116_1002938143300005918Saline LakeMKDDKMINDTYRKLIYFFENKIKVHFKDKDKIFYNGLIIDLNEEKMTLVLQERMKGTIPILLELIDTNSISEFKEVGE*
Ga0075116_1031803813300005918Saline LakeKLLYFFENKIWVHFKDFDKIFYNGLIIDLNEDKMTMVIQERVRGEFPFLLECVNPNSIAKFEVKGE*
Ga0075125_1008018523300005935Saline LakeMTKDKIAGDAYRKLVYFFENKIKIHFKDFDKIFYNGLIIDLNEKKKTMVLMERIKGTIPILLEFVNPDSISEYKEISP*
Ga0075125_1009737623300005935Saline LakeMKNETANENYRKFIYFFENKIKVHFKDFDDIFYNGLIIDLDEKKLIMVIMERIRGTMPILLEFVNPDSIVEFKEEGE*
Ga0075125_1019452113300005935Saline LakeKDLWNYMKDDKMINDTYRKLIYFFENKIKVHFKDKDKIFYNGLIIDLNEEKMTLVLQERMKGTIPILLELIDTNSISEFKEVGE*
Ga0075125_1023206023300005935Saline LakeMTKDKIAKDSFRKLIYFFKNKIKIHFKDMDNIFYNGLIIDLNENKLTMVLNETIKGTMPILLECINPESIREFKEVGE*
Ga0075125_1030707713300005935Saline LakeMTNEKGQNIYRKLLYFFENKIKVHFKDLDEIFYNGLILDLNESKQTLVLQERVRGTIPLLLEFLNENSIEEFKERRE*
Ga0075125_1035713123300005935Saline LakeMINETGQNNFRKLSYFFENEIKVHFKDMDNIFYNGFIIDLNERKLTMVFKERVKGTIPILLECINPDSIQ
Ga0098068_1001318283300006733MarineMKNENEIGQENYRKLIYFFENKIKVHFKNFDEIFYNGLIIDLDGKKLCMVFKERIRGTLPILLECVNPDSIAEFKEEGE*
Ga0098068_108438323300006733MarineMTKAKIAQDSYRKLIYFFENNIKIHFKDLDDIFYNGIIVDLNGDKLTMVLDEDVKGTMPILLEFINPESIRQFEVKGDDFLEKV*
Ga0102934_105851933300007537Pond SoilMTNDINKEVFRKLYYFFEEQRPVHFKDKDGIFYNGFIIDLSEEKYTMVLKERVKGTMPILLECIRPDSIREFKEVKE*
Ga0115362_10123078723300008416SedimentLLYFFENKIKIHFKDLDYIFYNGLILDLNEEKLTMVLRERVRGEIPVLLENVKPDSICKFNEVEDGR*
Ga0111033_103119113300008516Marine SedimentMTNESGQKVYRKLLYFFKNNLMVHFKDLDTIFYNGLILDLNEEKLTLVLRERIRGEIPILLECINEDSISKFKEEGE*
Ga0114918_1018736543300009149Deep SubsurfaceVEKLYKPFFIKLIMMNETGQNNFRKLIYFSENKIKVHFKDLDNIFYNGLILDLNEIKLTLILQERVRGIIPFLLEQIQTHSIQEFKEIGE*
Ga0114918_1019543133300009149Deep SubsurfaceMTNDKIAQDTYRKLIYFFENKIKIHFKDLDNIFYNGLILDLNEEKMTLVLQERIKGIMPIILEFINPNSIREFEEVGA*
Ga0114918_1028145233300009149Deep SubsurfaceMNNEIGQRNYRKLLYFFENKIRVHFTDLDEIFYNGLILDLSEENLSMVLNERVKGNMPILLECIKESSIEEFKEKGE*
Ga0114918_1048176023300009149Deep SubsurfaceMTNDTYRKLLYFFENKIEVHFKDVDNIFYNCLILDLNEKKQTMVIQERIKGTMPILLELVDNKTIRKMEDRE*
Ga0114918_1061936213300009149Deep SubsurfaceMVIMTNDKIANDSYRKFLYFFEGKIPVHFKDFEDIFYNGLIIDLNEEKKVMVLRERIKGTIPILLEFINPESICEFKEDGRC*
Ga0114918_1063147423300009149Deep SubsurfaceMTNEIGQNNYRKLLYYFENKILVHFKDSDGIFYNGLILDLNENKLTMIVQERIRGSIPILLEQVNTTSISKFEERGE*
Ga0114925_10003407113300009488Deep SubsurfaceMTNEIGQKVYRKLIYFFENKIKIHFKDLDNIFYNGLILDLNEEKLTMVLRERVRGELPILLEFINPDSISKFKEEGG*
Ga0114925_1077985133300009488Deep SubsurfaceVKISLGMTNEIGQKVYRKLLYFFENNLHVHFKDVDNIFYNGLILDLNEEKLTLVLRERVRGEIPILLEFINEDSISKFIEGGGSDV*
Ga0114919_1003655673300009529Deep SubsurfaceMKDEIGLEVYRKLLYFFENNLMIHFKDFNEIFYNGSILDLNEDKLTLVLKERVQGTVPLLLEKINPDSIVEFKEEEKWN*
Ga0114919_1007756743300009529Deep SubsurfaceMKNEVGIMNYRKLIYFFENKIQIHFNDLDHIFYNGLIIDLSEDKLTMVLRERIRGMIPILLENIIPHSIKELREVEK*
Ga0114919_1039179323300009529Deep SubsurfaceMRYEKMTKEKIAIESYRKLLYFFENKIAVHFKDFDEIFYNGLIISLNEEKKIMILKENIKGTIPILLECVNPDSISQYKEREVN*
Ga0114919_1041499133300009529Deep SubsurfaceMKNERGLTVYRKLLYFYENKLKVHFKDFNEIFYNGEIIDISEEKLTLVLKERVMGTLPFLLEQINPDSIYEFKEEKK*
Ga0114919_1049364423300009529Deep SubsurfaceMNEIGQKVYRKLLYFFENNLMVHFKDLDTIFYNGLILDLNEEKLTLVLRERVRGEIPILLECINEDSICKFKEEGEDE*
Ga0114919_1069590523300009529Deep SubsurfaceMKNEIGSEVYRKLIYFFENKLKVHFKDLNNIFYNGEIIDISEEKLTLVLKERVMGILPFILEQINPNSIYEFKEKKW*
Ga0114919_1075298913300009529Deep SubsurfaceIGQNVYRKLIYFYENKKKIHFKDLDHIFYNGEILELNEKKLCMVLRERIRGVIPILLECIKPDSIQEFKEEGWK*
Ga0114919_1117323523300009529Deep SubsurfaceMTNDKIAYDSYRKFLYFFKNQIEVHFKDVDDIFYNGFIIDLSEEKLTMVLNERVKGTIPILLEFINPNSIVKCERKEE*
Ga0105173_102316923300009622Marine OceanicMRNDLGERNYRILLYYFENKIKVHFKDLDEIFYNGLILDLNENKLTVVLQERMKGELPFLLENIKENSISKFKELGE*
Ga0114923_1004302053300009788Deep SubsurfaceMTKDKIANDSHRKFLYFYENKIKVHFKDFDEIFYNGEIIELNLDNLSMVFNENVKGTIPILLECINPDSIRKFEEKKRW*
Ga0114923_1008622523300009788Deep SubsurfaceMTNETIARDNFRKLIYFFENKIRIHFKDFDNIFYNGMIINLDEKKLTMILDERIKGTIPILLEFINPDSISEYREVKE*
Ga0114922_1036070013300011118Deep SubsurfaceMINDKNAYDSYRKLLYFFENQIEVHFKDFDDIFYNGFIIDLSEDKLTLVLDERVKGTIPILLEFINP
Ga0114922_1104409713300011118Deep SubsurfaceMTNEIGQNNFRKLLYYFENKVWIHFKDVNNIWYNGLILDLNEKKLTMVLRERVRGEIPFLLEQINPDSITKFKERGE*
Ga0164315_10000682373300013099Marine SedimentMKNEVGEMNYRKLIYFFENKIQIHFNDLDHIFYNGLIIDLSEDKLTMVLKERVKGTIPILLENIIPHSIKELKEVKE*
Ga0164315_1004880483300013099Marine SedimentMTDAQINQDTFRKLFYFFENKIKVHFKDLDGIFYNGIILDLNEEKMTMVLVENVKGTMPILLEFINSNSIREFTEVGK*
Ga0164318_1045217843300013103Marine SedimentCYFFEKQIPVHFKDKDEIFYNGYIIDLSEEKNIMVLKERIKGTMPILLECIKSDSIRKMEARQ*
(restricted) Ga0172363_1068946333300013130SedimentMIDETGQNNFRKLLYFFENNIKIHFKDLDGIFYNGLIIDLNEEKHTLVLLERVKGSIPILLEDIDSNSIVKF
(restricted) Ga0172362_1046597033300013133SedimentMTKDKIAHDALRKLRYFYDNKILIHFKDFNEIFYNGEIINLNEETLSMVFKERVRGTMPILLENVNPDSIFMFKEGGK*
(restricted) Ga0172375_1004263623300013137FreshwaterMTKDKIAHDALRKLRYFYENKILIHFKDFNEIFYNGEIINLNEETLSMVFKERVRGTMPILLENVNPDSIFMFKEGGK*
Ga0180007_1005637723300014656GroundwaterMIKDKIAHDSLRKFDYFFKNKVKVHFKDFDEIFYNGFILDLSSEKLTMVLVEDVKGTMPILLECVNPDSIREFTEVGK*
Ga0180007_1013505523300014656GroundwaterMTNAKIAHDSYRKLIYFFENKIEVHFKDFDDIFYNGMIIDLNEHKLTMVLSERVKGTIPILLEFINPDSIVKCEARG*
Ga0180007_1033003433300014656GroundwaterMTKDKNAHDSLRKFNYFFNNKVKVHFKDFDEIFYNGFILDLSSEKLTMVLVEDVKGTMPILLECVNPDSIREFTEVGK*
Ga0180437_1012644033300017963Hypersaline Lake SedimentMKYEKNEIGQKNFRKLNYFFENKIKVHFKDLDEIFYNGLILDLNENKLTMVLQERIRGSIPILLEFIKEDSIEEFREVRE
Ga0180437_1110375013300017963Hypersaline Lake SedimentMTHDKRGNEVYRKLIYFFKNNIEVHFKDIDNIFYNGFIIDLNKDKLVMVFNERVKGTMPILLECINSESIRKCGVVKXPLNTNALIVIM
Ga0180438_1004268523300017971Hypersaline Lake SedimentMTKEKIAKDSFRNLIYFFENKIKIHFKDFDEIFYNGYIVDLNEDKLTMVFTEDVKGTMPILLECVNPDSIRKFERVEDATRKN
Ga0180438_1007694823300017971Hypersaline Lake SedimentMTHDKRGNEVYRKLIYFFKNNIEVHFKDIDNIFYNGFIIDLNKDKLVMVFNERVKGTMPILLECINSESIRKCGVVK
Ga0180431_1003203993300017987Hypersaline Lake SedimentMTDDKIAHESYRKILYFFENKIKVHFKDFDEIFYNGLILDLNENKLTMVLKERVKGTMPFLLEKIKPDSIRKMEERE
Ga0180434_1123273623300017991Hypersaline Lake SedimentMTNDKIAHESYRKFLWFFENKIKVHFKDFDEVFYNGTIIDLNEKKSTMILQERVRGTIPFLLENINPDSIVKMEERK
Ga0180433_1022573053300018080Hypersaline Lake SedimentMTNEKGSNNYRKLLYYFENKIKIHFKDLDNIFYNGLIIDLSEKKLTMVLQERVKGSIPILLENIKTDSITEFREEVGEXLQHKY
Ga0222679_102571713300022858Saline WaterMKDDKMINDTYRKLIYFFENKIKVHFKDKDKIFYNGLIIDLNEEKMTLVLQERMKGTI
Ga0222667_104084423300022890Saline WaterMTNEIGQTNFRRLNYFAENKIRIHFKDLDNIFYNGLIIDLNEDKLTLVLQERVRGTIPILLEGIQTDSIQEFKEIGE
Ga0222682_100262433300023246Saline WaterMKDDKMINDTYRKLIYFFENKIKVHFKDKDKIFYNGLIIDLNEEKMTLVLQERMKGTIPILLELIDTNSISEFKEVGE
Ga0222703_100545813300023256Saline WaterRKYLNQKDLWNYMKDDKMINDTYRKLIYFFENKIKVHFKDKDKIFYNGLIIDLNEEKMTLVLQERMKGTIPILLELIDTNSISEFKEVGE
Ga0210003_109342523300024262Deep SubsurfaceMFVYVLHCYLTVVEKLYKPFFIKLIMMNETGQNNFRKLIYFSENKIKVHFKDLDNIFYNGLILDLNEIKLTLILQERVRGIIPFLLEQIQTHSIQEFKEIGE
Ga0209976_1003025743300024265Deep SubsurfaceMTNETIARDNFRKLIYFFENKIRIHFKDFDNIFYNGMIINLDEKKLTMILDERIKGTIPILLEFINPDSISEYREVKE
Ga0209977_1003261133300024432Deep SubsurfaceMTNEIGQKVYRKLIYFFENKIKIHFKDLDNIFYNGLILDLNEEKLTMVLRERVRGELPILLEFINPDSISKFKEEGG
Ga0209986_1011886733300024433Deep SubsurfaceMKNERGLTVYRKLLYFYENKLKVHFKDFNEIFYNGEIIDISEEKLTLVLKERVMGTLPFLLEQINPDSIYEFKEEKK
Ga0209986_1016188533300024433Deep SubsurfaceKDEIGLEVYRKLLYFFENNLMIHFKDFNEIFYNGSILDLNEDKLTLVLKERVQGTVPLLLEKINPDSIVEFKEEEKWN
Ga0209986_1036286423300024433Deep SubsurfaceMTKEKIAIESYRKLLYFFENKIAVHFKDFDEIFYNGLIISLNEEKKIMILKENIKGTIPILLECVNPDSISQYKEREVN
Ga0208015_100390393300025065MarineMKNENEIGQENYRKLIYFFENKIKVHFKNFDEIFYNGLIIDLDGKKLCMVFKERIRGTLPILLECVNPDSIAEFKEEGE
Ga0208957_1004020153300025087GroundwaterMTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL
Ga0207997_121519113300025736Saline LakeMINETGQNNFRKLSYFFENEIKVHFKDMDNIFYNGFIIDLNERKLTMVFKERVKGTIPILLECINPDSIQE
Ga0208451_101318913300026103Marine OceanicMRNDLGERNYRILLYYFENKIKVHFKDLDEIFYNGLILDLNENKLTVVLQERMKGELPFLLENIKENSISKFKELGEXFI
(restricted) Ga0255052_1038520133300027865SeawaterMKYEIGKEVYRKLLYFFENSIPVHFKTFKETWHNGLILDLNESKLTLVLKEFVQGEIPFLLEEINPDKISKYVEKEVN
(restricted) Ga0255055_1003304033300027881SeawaterMENEIGQNNYRKLIYFFENKIKVHFKDLDETWYNGLILDLSEIKLTLVIKEDVRGEIPVLLEDIKPSSISKFTEVGE
Ga0209427_1014919413300027901Marine SedimentKDKIAKDSYRKLFYFFENKIKIHFKDFDEIFYNGLIIDLNEDQLTMVLAEEVKGTIPILLEFINPDSITEFKEVER
(restricted) Ga0247840_1013133223300028581FreshwaterMINEIGQKNYRILSYYFENKIKIHFKDLDNIFYNGFILDLNARKLTLVLKERIKGEIPLLLEHIKTDSIVAFKEEVE
Ga0272443_1057102123300028883Marine SedimentMTNDKIAHDIFRKLHYFFENKIKIHFKDFDGIFYNGYIIDLNEEKLSMVFNERVKGTLPFLLEHINPDSIREFQEVSE
Ga0307928_1002327733300031227Saline WaterMTKDKIAGDAYRKLVYFFENKIKIHFKDFDKIFYNGLIIDLNEKKKTMVLMERIKGTIPILLEFVNPDSISEYKEISP
Ga0307928_1009766223300031227Saline WaterMTKDKIAKDSFRKLIYFFKNKIKIHFKDMDNIFYNGLIIDLNENKLTMVLDETIKGTMPILLECINPESIRKFKEVRE
Ga0307928_1010799763300031227Saline WaterMKNERGLMNYRKLVYFSENKIMIHFKDLKEIWYNGLILDLSESKLTMVIKERLRGSLPILLEDIKTDSIVEFTEKGE
Ga0307928_1010864613300031227Saline WaterMKNETANENYRKFIYFFENKIKVHFKDFDDIFYNGLIIDLDEKKLIMVIMERIRGTMPILLEFVNPDSIVEFKEEGE
Ga0307928_1040114533300031227Saline WaterMTKDKIAKDSYRKLLYFFENKIWVHFKDFDKIFYNGLIIDLNEDKMTMVIQERVRGEFPFLLECVNPDSIAKFNEGGN
Ga0307430_113152133300031337Salt MarshMPNDKTAHDSYRKLLYFFENKIKVHFKDFDDVFYNGIIIDLNEEKLSMILMERMKGTMPVLLEFINPDSIRKMEERGK
Ga0307434_115547233300031379Salt MarshMPNDKSAHDSYRKLLYFFENKIKVHFKDFDDVFYNGIIIDLNEEKLSMILMERMKGTMPILLEFINPDSIRKMEERGK
Ga0307380_1005404813300031539SoilMTNDKIGYDSYRKLLYFFENKIQVHFKDLDNVFYNGSIIDLNEEKLTMVFSERIKGTMPILLECINPESIRKFTEVRG
Ga0307380_1043875033300031539SoilNFIFLMTKDKIAYDSYRKLIYFFKNEIKVHFKDFDEIFYNGIIIDLNEEKFTMVLAEDIKGTMPILLEFVNPDSIREYTEVRR
Ga0307380_1101002823300031539SoilMKHEKFAQDSYRKLHYFFKNKIKVHFKDLDEIFYNGFIIDLNEEKFTMVLAEDIRGTMPILLECVNPDSIREYTEVGG
Ga0307379_1040612313300031565SoilMTNDKIANDSYRKLLYFFENKIEVHFKDLDEIFYNGLIVDLNEKQQTLVLDERIKGMMPILLEFINSDSIRQFEVRK
Ga0307379_1084095433300031565SoilMKNEIGNRNYRQLLYYFENKIKIHFKDLDEIFYNGLIIDLSETKLTMVLQERIRGTIPILLEFIKPN
Ga0307379_1163760913300031565SoilMTKDKIAQDAYRKLIYFYKDKIKVHFKDFNDIFYNGLVIDLNDASKIMILIENVKGTIPILLEDVNPDSICKYKEVGE
Ga0307378_1040792653300031566SoilMTKDKIAYDSYRKLIYFFKNEIKVHFKDFDEIFYNGIIIDLNEEKFTMVLAEDIKGTMPILLEFVNPDSIREYTEVGRXNLKNKQK
Ga0307376_1002010263300031578SoilMTNEIGKNNYRKLLYYFENQIKVHFKDLDEIFYNGLILDLNENKLTLVLSERVRGEVPMLLEQINPDSITKFKEREE
Ga0307376_1023109533300031578SoilMTNEIGQNVYRKLIYFYENKKKIHFKDLDHIFYNGEILELNEKKLCMVLRERIRGVIPILLEFIKPDSIQEFKEEGWK
Ga0307376_1028763343300031578SoilMINEIGQKNYRKLLFFFENKIKIHFKDLDDIFYNGTIVDLDEKKLCMVLRERIRGTIPILLEFINPDSIEQFKEDGK
Ga0307376_1054979723300031578SoilMTDDKIANDSYRKFIYFFENKIKVHFKDLDEIFYNGLIIDLSKDKSTMVLAENVKGTMPILLECVNPDSIRKFTEKKEFEDDYXFSX
Ga0307992_101520213300031601MarineMILRNNMTNDKIAKDSFRKLIFFFKNKIKIHFKDMDNIFYNGLIIDLNENKLTMVLDETIKGTMPILLECINPESIREFKEVGE
Ga0307375_1078261523300031669SoilKFIYFFENKIKVHFKDLDEIFYNGLIIDLSKDKSTMVLAENIKGTMPILLEFINPDSIRKFTEKKEGVNX
Ga0307377_1022731143300031673SoilMINEIGQKNYRKLLFFFENKIKIHFKDLDDIFYNGTIVDLDEKKLCMVLRERIRGTIPILLEFINPDSIEQFKEDGKXVMNPQR
Ga0307377_1047355213300031673SoilMTKDKIAQDAYRKLIYFYKDKIKVHFKDFNDIFYNGLVIDLNDASKIMILIENVKGTIPILLEDVNPDSICKYKEVGEXAKDMAL
Ga0307377_1059808723300031673SoilMTKDKIAYDSYRKLIYFFKNEIKVHFKDFDEIFYNGIIIDLNEEKFTMVLAEDIKGTMPILLEFVNPDSIREYTEVGG
Ga0307377_1060758423300031673SoilMTNDKIGYDAYRKFLYFFENKIHVHFKDMDNVFYNGLIIDLNEEKLTMVFLERVKGTMPILLEFINPESIRTFTEVRE


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