NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F078611

Metagenome Family F078611

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F078611
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 45 residues
Representative Sequence MNKRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR
Number of Associated Samples 49
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 34.48 %
% of genes near scaffold ends (potentially truncated) 21.55 %
% of genes from short scaffolds (< 2000 bps) 66.38 %
Associated GOLD sequencing projects 42
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (77.586 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake
(25.862 % of family members)
Environment Ontology (ENVO) Unclassified
(30.172 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Hypersaline (saline)
(48.276 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.83%    β-sheet: 0.00%    Coil/Unstructured: 54.17%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF13385Laminin_G_3 4.35
PF10102DUF2341 1.74
PF01797Y1_Tnp 1.74
PF00589Phage_integrase 1.74
PF01807zf-CHC2 0.87
PF09250Prim-Pol 0.87
PF01047MarR 0.87
PF13489Methyltransf_23 0.87
PF13412HTH_24 0.87
PF14528LAGLIDADG_3 0.87
PF01844HNH 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 1.74
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 0.87


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.59 %
All OrganismsrootAll Organisms22.41 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000374|P_1C_Sed_2_UnCtyDRAFT_1005819Not Available2789Open in IMG/M
3300001335|ML8_10017116Not Available3506Open in IMG/M
3300001335|ML8_10023195All Organisms → cellular organisms → Archaea2794Open in IMG/M
3300004242|Ga0066601_10005766All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon3594Open in IMG/M
3300005613|Ga0074649_1006855All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon SG8-52-49175Open in IMG/M
3300005613|Ga0074649_1202172Not Available598Open in IMG/M
3300005915|Ga0075122_10000711All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon25277Open in IMG/M
3300005915|Ga0075122_10066029Not Available1473Open in IMG/M
3300005915|Ga0075122_10153665Not Available842Open in IMG/M
3300005915|Ga0075122_10267226Not Available581Open in IMG/M
3300005917|Ga0075115_10221781Not Available651Open in IMG/M
3300005918|Ga0075116_10016041All Organisms → cellular organisms → Bacteria3261Open in IMG/M
3300005918|Ga0075116_10045005Not Available1836Open in IMG/M
3300005918|Ga0075116_10059916Not Available1557Open in IMG/M
3300005918|Ga0075116_10061794Not Available1530Open in IMG/M
3300005918|Ga0075116_10321302Not Available560Open in IMG/M
3300005918|Ga0075116_10326594Not Available554Open in IMG/M
3300005935|Ga0075125_10002037All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon9866Open in IMG/M
3300005935|Ga0075125_10007520Not Available5272Open in IMG/M
3300005935|Ga0075125_10037652Not Available2209Open in IMG/M
3300005935|Ga0075125_10043558Not Available2032Open in IMG/M
3300005935|Ga0075125_10073671All Organisms → Viruses → unclassified archaeal viruses → ANMV-1 virus1499Open in IMG/M
3300005935|Ga0075125_10092526Not Available1312Open in IMG/M
3300005935|Ga0075125_10124323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus1100Open in IMG/M
3300005935|Ga0075125_10259795Not Available698Open in IMG/M
3300005935|Ga0075125_10262277Not Available694Open in IMG/M
3300005935|Ga0075125_10328576Not Available601Open in IMG/M
3300005939|Ga0075123_10095400Not Available1145Open in IMG/M
3300005939|Ga0075123_10263292Not Available638Open in IMG/M
3300006733|Ga0098068_1000225All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon23766Open in IMG/M
3300007535|Ga0102926_1082966Not Available1369Open in IMG/M
3300007960|Ga0099850_1042119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae1968Open in IMG/M
3300008255|Ga0100403_1063928Not Available1531Open in IMG/M
3300008470|Ga0115371_10143894Not Available1746Open in IMG/M
3300008470|Ga0115371_10925617Not Available525Open in IMG/M
3300009034|Ga0115863_1132744All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium3064Open in IMG/M
3300009149|Ga0114918_10064908Not Available2382Open in IMG/M
3300009149|Ga0114918_10138616Not Available1463Open in IMG/M
3300009149|Ga0114918_10183666Not Available1225Open in IMG/M
3300009149|Ga0114918_10216643Not Available1104Open in IMG/M
3300009149|Ga0114918_10244730Not Available1023Open in IMG/M
3300009149|Ga0114918_10432736Not Available713Open in IMG/M
3300009149|Ga0114918_10441006Not Available704Open in IMG/M
3300009149|Ga0114918_10466249Not Available680Open in IMG/M
3300009149|Ga0114918_10585007Not Available591Open in IMG/M
3300009149|Ga0114918_10593765Not Available586Open in IMG/M
3300009149|Ga0114918_10663693Not Available548Open in IMG/M
3300009494|Ga0127413_10352988Not Available593Open in IMG/M
3300009529|Ga0114919_10143069Not Available1723Open in IMG/M
3300009529|Ga0114919_10816205Not Available632Open in IMG/M
3300009529|Ga0114919_10837948Not Available622Open in IMG/M
3300009529|Ga0114919_10858129Not Available614Open in IMG/M
3300009529|Ga0114919_11016571Not Available557Open in IMG/M
3300013101|Ga0164313_10749159Not Available803Open in IMG/M
3300014913|Ga0164310_10005228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium7582Open in IMG/M
3300017987|Ga0180431_10006700All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon13615Open in IMG/M
3300017987|Ga0180431_10080170Not Available2773Open in IMG/M
3300017987|Ga0180431_10184545All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon1608Open in IMG/M
3300017987|Ga0180431_10286613Not Available1210Open in IMG/M
3300017989|Ga0180432_10003895All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon20911Open in IMG/M
3300017989|Ga0180432_10003895All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon20911Open in IMG/M
3300017990|Ga0180436_11133330Not Available596Open in IMG/M
3300017991|Ga0180434_10002751All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon22954Open in IMG/M
3300017991|Ga0180434_10150310Not Available1899Open in IMG/M
3300018065|Ga0180430_10036396Not Available3501Open in IMG/M
3300019730|Ga0194001_1012362Not Available875Open in IMG/M
3300022220|Ga0224513_10115993All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300022821|Ga0222673_1000290All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon26655Open in IMG/M
3300022828|Ga0222641_1000841Not Available4881Open in IMG/M
3300022828|Ga0222641_1001088All Organisms → cellular organisms → Archaea4007Open in IMG/M
3300022858|Ga0222679_1000185All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon25884Open in IMG/M
3300022858|Ga0222679_1002947Not Available4594Open in IMG/M
3300022874|Ga0222685_1000138All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon17498Open in IMG/M
3300023061|Ga0222700_1006906Not Available2118Open in IMG/M
3300023251|Ga0222683_1038188Not Available783Open in IMG/M
3300023292|Ga0222694_1031245Not Available675Open in IMG/M
3300024262|Ga0210003_1029385Not Available3109Open in IMG/M
3300024262|Ga0210003_1109245Not Available1243Open in IMG/M
3300024262|Ga0210003_1122094Not Available1152Open in IMG/M
3300024262|Ga0210003_1214532Not Available780Open in IMG/M
3300024262|Ga0210003_1220111Not Available766Open in IMG/M
3300024262|Ga0210003_1347618Not Available553Open in IMG/M
3300024262|Ga0210003_1364534Not Available534Open in IMG/M
3300025018|Ga0210043_1072155Not Available1070Open in IMG/M
3300025065|Ga0208015_1000421All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon23804Open in IMG/M
3300025661|Ga0208905_1165204Not Available613Open in IMG/M
3300025697|Ga0208769_1077138Not Available1007Open in IMG/M
3300025697|Ga0208769_1176010Not Available588Open in IMG/M
3300025697|Ga0208769_1208606Not Available523Open in IMG/M
3300025698|Ga0208771_1186161Not Available558Open in IMG/M
3300025736|Ga0207997_1013696All Organisms → Viruses → unclassified archaeal viruses → ANMV-1 virus3478Open in IMG/M
3300025736|Ga0207997_1022869Not Available2533Open in IMG/M
3300025736|Ga0207997_1077870Not Available1142Open in IMG/M
3300025736|Ga0207997_1128742Not Available818Open in IMG/M
3300025736|Ga0207997_1223299Not Available558Open in IMG/M
3300025736|Ga0207997_1235931Not Available537Open in IMG/M
3300025736|Ga0207997_1241587Not Available528Open in IMG/M
3300027739|Ga0209575_10004624All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4788Open in IMG/M
3300027822|Ga0209633_10196299Not Available1103Open in IMG/M
(restricted) 3300027865|Ga0255052_10264681Not Available839Open in IMG/M
3300028883|Ga0272443_10012567Not Available7140Open in IMG/M
3300028883|Ga0272443_10045521All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon2784Open in IMG/M
3300028883|Ga0272443_10196561Not Available1005Open in IMG/M
3300031227|Ga0307928_10024763Not Available4072Open in IMG/M
3300031227|Ga0307928_10033500Not Available3400Open in IMG/M
3300031227|Ga0307928_10034153Not Available3362Open in IMG/M
3300031227|Ga0307928_10048890Not Available2699Open in IMG/M
3300031227|Ga0307928_10080924Not Available1958Open in IMG/M
3300031227|Ga0307928_10085190Not Available1893Open in IMG/M
3300031227|Ga0307928_10132549Not Available1411Open in IMG/M
3300031227|Ga0307928_10198201Not Available1071Open in IMG/M
3300031227|Ga0307928_10491857Not Available550Open in IMG/M
3300031227|Ga0307928_10534873Not Available515Open in IMG/M
3300031601|Ga0307992_1064240Not Available1546Open in IMG/M
3300031669|Ga0307375_10534372Not Available701Open in IMG/M
3300031673|Ga0307377_10447134Not Available951Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake25.86%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface19.83%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water16.38%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment8.62%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake3.45%
Marine SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment2.59%
AquiferEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer1.72%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater1.72%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.72%
Wetlands BenthicEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic1.72%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.72%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.72%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.72%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.72%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.86%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.86%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.86%
Sediment, IntertidalEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal0.86%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.86%
Methane Seep SedimentEnvironmental → Aquatic → Marine → Cold Seeps → Sediment → Methane Seep Sediment0.86%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.86%
MarineEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine0.86%
Lake WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water0.86%
Salt PondEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Salt Pond0.86%
Pond SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil0.86%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000374Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 2EnvironmentalOpen in IMG/M
3300001335Wetlands benthic microbial communities from British Columbia, Canada - ML8EnvironmentalOpen in IMG/M
3300004242Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11EnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005915Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKBEnvironmentalOpen in IMG/M
3300005917Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKHEnvironmentalOpen in IMG/M
3300005918Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKCEnvironmentalOpen in IMG/M
3300005935Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKNEnvironmentalOpen in IMG/M
3300005939Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKXEnvironmentalOpen in IMG/M
3300006733Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsClEnvironmentalOpen in IMG/M
3300007535Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008255Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01tEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009034Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, KoreaEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009494Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 12-14 cmbsfEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300014913Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cmEnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300017990Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018065Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaGEnvironmentalOpen in IMG/M
3300019730Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MGEnvironmentalOpen in IMG/M
3300022220Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21EnvironmentalOpen in IMG/M
3300022821Saline water microbial communities from Ace Lake, Antarctica - #801EnvironmentalOpen in IMG/M
3300022828Saline water microbial communities from Ace Lake, Antarctica - #227EnvironmentalOpen in IMG/M
3300022858Saline water microbial communities from Ace Lake, Antarctica - #939EnvironmentalOpen in IMG/M
3300022874Saline water microbial communities from Ace Lake, Antarctica - #1077EnvironmentalOpen in IMG/M
3300023061Saline water microbial communities from Ace Lake, Antarctica - #1454EnvironmentalOpen in IMG/M
3300023251Saline water microbial communities from Ace Lake, Antarctica - #1073EnvironmentalOpen in IMG/M
3300023292Saline water microbial communities from Ace Lake, Antarctica - #1333EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025018Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)EnvironmentalOpen in IMG/M
3300025065Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes)EnvironmentalOpen in IMG/M
3300025661Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS (SPAdes)EnvironmentalOpen in IMG/M
3300025697Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC (SPAdes)EnvironmentalOpen in IMG/M
3300025698Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX (SPAdes)EnvironmentalOpen in IMG/M
3300025736Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)EnvironmentalOpen in IMG/M
3300027739Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027822Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes)EnvironmentalOpen in IMG/M
3300027865 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21EnvironmentalOpen in IMG/M
3300028883Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Acet-12EnvironmentalOpen in IMG/M
3300031227Saline water microbial communities from Ace Lake, Antarctica - #232EnvironmentalOpen in IMG/M
3300031601Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300031673Soil microbial communities from Risofladan, Vaasa, Finland - TR-3EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
P_1C_Sed_2_UnCtyDRAFT_100581963300000374Salt PondMNNRTTINIDKELREILKSKRKYKRETYDEVLKRILKDKQKMRGMK*
ML8_1001711613300001335Wetlands BenthicMARTTINIDKEIRESLNACKKYKRETYDEVLKELIKNRKKMKGGLK*
ML8_1002319523300001335Wetlands BenthicMAKDRTTINIGKEIRSDLLKFKRYKRETYDEILRRLIRTKKKLK*
Ga0066601_1000576643300004242FreshwaterMNKRTTINIDQEVRKALQGCKKYQRETYDEILKRLLIKDKKRLKE*
Ga0074649_100685573300005613Saline Water And SedimentMARTTINIDKTLREELKKCRKYKRETYDETLKRLIKDKRRLK*
Ga0074649_120217213300005613Saline Water And SedimentMHQLYMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKRRLKK*
Ga0075122_10000711183300005915Saline LakeMGMAKSGIIKMNKRTTINIDKEIRNSLNSCKKYKRETYDEILKDLIKSKKRLK*
Ga0075122_1006602933300005915Saline LakeMKNRTTINIAKEIRDSLNSCKKYKRETYDEILKDLIRTKKSIKK*
Ga0075122_1015366523300005915Saline LakeMADNTTINIKKVIRKDLQSCKKYKRETYDEVLKRLIANDKRRLKN*
Ga0075122_1026722623300005915Saline LakeMHQLYMTNRTTINIEKEIASDLRSCKKYKRETYDEVLKRLIKDKKVVMGK*
Ga0075115_1022178133300005917Saline LakeKMARTTINIDKEIRDSLNACKKYKRETYDEILKDLIKSKVGKK*
Ga0075116_1001604173300005918Saline LakeMARTTINIDKAIREALKECKKYPRETYDDTLKRLIKNKARLKG*
Ga0075116_1004500513300005918Saline LakeMADNTTINIKKVIRRDLQSCKKYKRETYDEVLDRLIKNDKKRLKL*
Ga0075116_1005991633300005918Saline LakeMATNRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVMGK*
Ga0075116_1006179423300005918Saline LakeVDHVIGVIIKMKNRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR*
Ga0075116_1032130223300005918Saline LakeMARTTINIDKEIRKALQDCRKYKRETYDDTLKRLIKDRKRLEKA*
Ga0075116_1032659423300005918Saline LakeMTDNTTINIKKVIRKDLQNCRKYKRETYDEVLSRLIANDKRRLKQ*
Ga0075125_1000203723300005935Saline LakeMKDNTTINIKKTIRKDLKSCKKYKRETYDEILDRLIKNDKRRLKK*
Ga0075125_1000752093300005935Saline LakeMKNRTTINITKEIRDSLNSCKKYKRETYDEILKDLIRTKKSIKK*
Ga0075125_1003765263300005935Saline LakeVLVRWQDINMETNRTTINIEKEIARDLRSCKKYKRETYDEVLKRLIKDKKQVMGK*
Ga0075125_1004355853300005935Saline LakeMEECLVKMARTTINIDKEIRKALQDCRKYKRETYDDTLKRLIKDKRRLK*
Ga0075125_1007367113300005935Saline LakeMHPLYMATTRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVIGK*
Ga0075125_1009252623300005935Saline LakeMNKRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR*
Ga0075125_1012432323300005935Saline LakeMHQLYMTNRTTINIEKEIASDLRSCKKYKRETYDEVLKRLIKDKKRVMGK*
Ga0075125_1025979523300005935Saline LakeMKDNTTINIKKVIRKELQSCKKYQRETYDEVLTRLITNDKRRLKQ*
Ga0075125_1026227723300005935Saline LakeMADNTTINIKKVIRKELQSCRKYKRETYDEVLERLIKNDKRRLKQ*
Ga0075125_1032857623300005935Saline LakeMALRTTINIEKVIAKELRECKKYKRETYDDILKRLIKDKRRLK*
Ga0075123_1009540033300005939Saline LakeMATNRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVIGK*
Ga0075123_1026329213300005939Saline LakeYILIMHQLYMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR*
Ga0098068_1000225403300006733MarineMVNRTTINIDKEIRDELNKCKKYKRETYDETLKRLIKDKKRLQKAQ*
Ga0102926_108296643300007535Pond SoilMANRTTINIDKKIREELNKCKKYKRETYDDTLKRLIKDRTKLKREY*
Ga0099850_104211963300007960AqueousMNIIKMADNTTINIKKQIRKELQSCKKYKRETYDEVLERLIKQDKKKLR*
Ga0100403_106392833300008255AquiferMANRTTINIEKAIREELNKCKNYKRETYDEVLKRLIKDKQKLKRDQ*
Ga0115371_1014389483300008470SedimentMGMAKSGIIKMNKRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKRLKQ*
Ga0115371_1092561713300008470SedimentMARTTINIDKEIRDSLNACKKYKRETYDEILKDLIKSKGVKK*
Ga0115863_113274453300009034Sediment, IntertidalMRTTININKEIRDALKKKKMYKRETYDDIIKRLIRKDKRRLK*
Ga0114918_1006490813300009149Deep SubsurfaceMTKRTTINIDKEIRESLNACKKYKRETYDEVLKGLVEDRIRQRKAQTKGGLNKK
Ga0114918_1013861653300009149Deep SubsurfaceMTENTTINIKKQIRKELQGCRKYKRETYDEILQRLIKNDKGRLKK*
Ga0114918_1018366663300009149Deep SubsurfaceMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKLKGKKK*
Ga0114918_1021664313300009149Deep SubsurfaceTFGDEKIMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKIKK*
Ga0114918_1024473013300009149Deep SubsurfaceMQGEGENKMTENTTINIKKQIRKELQGLKKYKRETYDEILQRLIKNDKRRITK*
Ga0114918_1043273623300009149Deep SubsurfaceMANNTTININKEVRADLQKCKKYKRETYDEILKRLIKNDKRKLKK*
Ga0114918_1044100623300009149Deep SubsurfaceMTDNTTINIRKQIRKELQGCKKYKRETYDEVLERLINNDKRRLKK*
Ga0114918_1046624913300009149Deep SubsurfaceMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKLK
Ga0114918_1058500733300009149Deep SubsurfaceMEAYYFKMTDNTTINIKKQIRKELQGLKKYKRETYDEILQRLIKNDKGRLKK*
Ga0114918_1059376533300009149Deep SubsurfaceMARTTINIDKEVRKALQDCRKYKRETYDDTLKRLIKDKRRVEKA*
Ga0114918_1066369333300009149Deep SubsurfaceMARTTINIDTEVRTWLKACKKYKRETYDDVLRDLIIEKKKMKRRLEKG*
Ga0127413_1035298833300009494Methane Seep SedimentTTINIKKQIRKELQSCRKYKRETYDEILERLIKNDKRRLKK*
Ga0114919_1014306913300009529Deep SubsurfaceMTESTTINIKKIIRKELQGCKKYKRETYDEVLERLIANDKKR
Ga0114919_1081620523300009529Deep SubsurfaceMGVYNMKDNTTINIKKAIRKELQSCKKYKRETYDEILERLIQNDKARLKR*
Ga0114919_1083794813300009529Deep SubsurfaceMNKRTTINIDKEIRDSLNQCKKYKRETYDEVLKDLIKSKRKLKK*
Ga0114919_1085812913300009529Deep SubsurfaceKAIRKELQGCKKYKRETYDEILQRLIKNDKGRLKK*
Ga0114919_1101657113300009529Deep SubsurfaceESTTINIKKIIRKELQGCKKYKRETYDEVLERLIANDKKRLKK*
Ga0164313_1074915913300013101Marine SedimentMANDRTTINIEKEVRDALIEAKKYKRETYDDTLKRLIKDKARLKK*
Ga0164310_1000522853300014913Marine SedimentMADNTTINIKKVIRKELQGCRKYKRETYDEVLERLIKNDKKRLKE*
Ga0180431_10006700113300017987Hypersaline Lake SedimentMADRTTINIEKKIREELNKCKNYKRETYDEVLKRLIKDKAKLKRDL
Ga0180431_1008017033300017987Hypersaline Lake SedimentMANNRTTINIEKAVRDELNKCKKYKRETYDETLKRLIKDKAKIKKEY
Ga0180431_1018454553300017987Hypersaline Lake SedimentMANNRTTINIEKAVRDELNKCKKYKRETYDETLKRLIK
Ga0180431_1028661323300017987Hypersaline Lake SedimentMADRTTINIEKKIREELNKCKNYKRETYDEVLKRLIKDKAKLKRDM
Ga0180432_1000389513300017989Hypersaline Lake SedimentTTINIEKKIREELNKCKNYKRETYDEVLKRLIKDKAKLKRDL
Ga0180432_10003895323300017989Hypersaline Lake SedimentMADRTTINIEKKIREELNKCKNYKRETYDEVLKRLIKDKAKLKRD
Ga0180436_1113333023300017990Hypersaline Lake SedimentMTDNTTINIKKQIRKDLQGCRKYKRETYDEVLKRLIENDKKRLKK
Ga0180434_10002751103300017991Hypersaline Lake SedimentMARTTINIDKELREILKSRRKYKRETYDEILKRLIKDKQRLRK
Ga0180434_1015031023300017991Hypersaline Lake SedimentMSNRTTINIEKAIRDELNKCKKYKRETYDETLKRLIKDKKRLK
Ga0180430_1003639673300018065Hypersaline Lake SedimentMIIHQLYMTDNTTINIKKQIRKDLQGCRKYKRETYDEVLKRLIENDKKRLKK
Ga0194001_101236213300019730SedimentMARTTINIDKEIRDSLNACKKYKRETYDEILKDLIKQKRRKK
Ga0224513_1011599333300022220SedimentMKDSTTINIKKAIRNELQGCKKYKRETYDEILERLIQNDKRRLKK
Ga0222673_1000290193300022821Saline WaterMARTTINIDKEIRDSLNACKKYKRETYDEILKDLIKSKVGKK
Ga0222641_100084173300022828Saline WaterMERTTINIDKEIRDSLNACKKYKRETYDEILKDLIKSKAGKK
Ga0222641_100108843300022828Saline WaterMARTTINIDKAIREALKECKKYPRETYDDTLKRLIKNKARLKG
Ga0222679_1000185313300022858Saline WaterMGMAKSGIIKMNKRTTINIDKEIRNSLNSCKKYKRETYDEILKDLIKSKKRLK
Ga0222679_100294743300022858Saline WaterMKNRTTINITKEIRDSLNSCKKYKRETYDEILKDLIRTKKSIKK
Ga0222685_100013823300022874Saline WaterMATNRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVMGK
Ga0222700_100690693300023061Saline WaterMKNRTTINIAKEIRDSLNSCKKYKRETYDEILKDLIRTKKSIKK
Ga0222683_103818813300023251Saline WaterMARTTINIDKAIREALKECKKYPRETYDDTLKRLIKNKARLK
Ga0222694_103124533300023292Saline WaterMNKRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR
Ga0210003_102938583300024262Deep SubsurfaceMARTTINIDKEVRKALQDCRKYKRETYDDTLKRLIKDKRRVEKA
Ga0210003_110924523300024262Deep SubsurfaceMTDNTTINIRKQIRKELQGCRKYKRETYDEILQRLIKNDKGRLKK
Ga0210003_112209413300024262Deep SubsurfaceTFGDEKIMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKIKK
Ga0210003_121453223300024262Deep SubsurfaceMTNKRTTINIDKEIRNSLNACKKYKRETYDEILKDLIKEKGRKK
Ga0210003_122011143300024262Deep SubsurfaceTTINIKKAIRKELQGLKKYKRETYDEILQRLIKNDKRRITK
Ga0210003_134761813300024262Deep SubsurfaceMTDNTTINIRKQIRKELQGLKKYKRETYDEILQRLIKNDKRRITK
Ga0210003_136453423300024262Deep SubsurfaceMARTTINIDTEVRTWLKACKKYKRETYDDVLRDLIIEKKKMKRRLEKG
Ga0210043_107215523300025018AquiferMANRTTINIEKAIREELNKCKNYKRETYDEVLKRLIKDKQKLKRDQ
Ga0208015_1000421123300025065MarineMVNRTTINIDKEIRDELNKCKKYKRETYDETLKRLIKDKKRLQKAQ
Ga0208905_116520433300025661Lake WaterHWDHTREIFKMATNRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVMGK
Ga0208769_107713813300025697Saline LakeRTTINIDKEIRNSLNSCKKYKRETYDEILKDLIKSKKRLK
Ga0208769_117601033300025697Saline LakeYKMADNTTINIKKVIRKDLQSCKKYKRETYDEVLKRLIANDKRRLKN
Ga0208769_120860633300025697Saline LakeMARTTINIDKEIRKALQDCRKYKRETYDDTLKRLIKDRKRLEKA
Ga0208771_118616123300025698Saline LakeKIIMKNRTTINITKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR
Ga0207997_101369663300025736Saline LakeMATTRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVIGK
Ga0207997_102286973300025736Saline LakeMTNRTTINIEKEIASDLRSCKKYKRETYDEVLKRLIKDKK
Ga0207997_107787023300025736Saline LakeMKDNTTINIKKTIRKDLKSCKKYKRETYDEILDRLIKNDKRRLKK
Ga0207997_112874223300025736Saline LakeTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR
Ga0207997_122329933300025736Saline LakeMEECLVKMARTTINIDKEIRKALQDCRKYKRETYDDTLKRLIKDKRRLK
Ga0207997_123593123300025736Saline LakeVLVRWQDINMETNRTTINIEKEIARDLRSCKKYKRETYDEVLKRLIKDKKQVMGK
Ga0207997_124158713300025736Saline LakeMADNTTINIKKVIRKELQSCRKYKRETYDEVLERLIKNDKRR
Ga0209575_1000462473300027739FreshwaterMNKRTTINIDQEVRKALQGCKKYQRETYDEILKRLLIKDKKRLKE
Ga0209633_1019629953300027822MarineMARTTINIDKEIRDALIKTKKYKRETYDDTLKRLIKDKARLKR
(restricted) Ga0255052_1026468123300027865SeawaterMKRTTINIGTEIRKSLQGHKKYKRETYDEILKRLMARDKKRLKK
Ga0272443_10012567113300028883Marine SedimentMANRTTINIDKEVKMALKGCKRYRRETYDDILKRLIKEKVKIK
Ga0272443_1004552113300028883Marine SedimentMERTTINIDKEIRDSLNQCKRYKRETYDEILKDLIKSKMRTKK
Ga0272443_1019656123300028883Marine SedimentMANQRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKRRVKK
Ga0307928_1002476373300031227Saline WaterMHQLYMANRTTINIDKEIRDSLSSCKKYKRETYDEILKDLIKSKKKLK
Ga0307928_1003350073300031227Saline WaterMKDNTTINIKKTVRKELQGCKKYKRETYDEILDRLIKNDKRRLKK
Ga0307928_1003415333300031227Saline WaterMTNRTTINIEKEIASDLRSCKKYKRETYDEVLKRLIKDKKRVMGK
Ga0307928_1004889053300031227Saline WaterMTNRTTINIEKEIASDLRSCKKYKRETYDEVLKRLIKDKKVVMGK
Ga0307928_1008092443300031227Saline WaterMHQLYMKNRTTINIDKEIRDSLNACKKYKRETYDEILKGLIKAKRGKK
Ga0307928_1008519023300031227Saline WaterMHQLYMANRTTINIDKEIRDSLNSCKKYKRETYDEILKDLIKSKKKLKR
Ga0307928_1013254943300031227Saline WaterMETNRTTINIEKEIAKDLRSCKKYKRETYDEVLKRLIKDKKQVMGK
Ga0307928_1019820123300031227Saline WaterMALRTTINIEKVIAKELRECKKYKRETYDDILKRLIKDKRRLK
Ga0307928_1049185713300031227Saline WaterMARTTINIDKEIRDSLNACKKYKRETYDEILKDLIKSKSGKK
Ga0307928_1053487313300031227Saline WaterRTTINIEKEIAKDLRSCKKYKRETYDEVLARLIKDKKQVIGK
Ga0307992_106424073300031601MarineMHGLNKMTDNTTINIKKEIRKELQGCKKYKRETYDEILQRLIKNDKRRLKK
Ga0307375_1053437233300031669SoilIDKEIAKALQGCRKYKRQTYDEVLKDLIKTKRRLKK
Ga0307377_1044713413300031673SoilMARTTINIDKVIAKDLRDLKKYKRETYDEILKDLIKKRKKK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.