3300024978: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300024978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095080 | Ga0209941
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 279004683
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000135	Metagenome / Metatranscriptome	1961	Y
F007832	Metagenome / Metatranscriptome	344	Y
F025775	Metagenome	200	Y
F069970	Metagenome	123	Y
F074177	Metagenome	120	Y
F082508	Metagenome	113	N
F099558	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209941_1000365	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	62052
Ga0209941_1000907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	26147
Ga0209941_1001706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14172
Ga0209941_1002259	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11042
Ga0209941_1047645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	972
Ga0209941_1074535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706
Ga0209941_1090409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	617

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209941_1000365	Ga0209941_100036553	F074177	MKNQSYQSKSALSLFFSHLAKNFIALFESGNKREFQRLKDFIAS
Ga0209941_1000907	Ga0209941_10009079	F007832	VLFLADIFPGGGSPVADVFAIAIALFLFALLFWVIDLIDRI
Ga0209941_1001706	Ga0209941_100170612	F069970	MTTHLTNAIKVGDRVIFDISWVEKFKAETSSSDKAVKQYQQLVLGGIDQAGVVKELGGNLTTVAYPDGWVLPVPTKYLIVLQSREDILMVI
Ga0209941_1002259	Ga0209941_100225911	F069970	MNTLHPKQAIKTGDKVIFDTDKIEVFKAETGGPDEAIRQYRQLVLGGVDQIGIVKEFGNNLTTVSYPDGWDLPVPTKYLIVLPEES
Ga0209941_1003368	Ga0209941_100336811	F000135	MWFQLRSPELAEEFEDLMAGDRDIVRGSLDTVSEWRLARPADVPGQAIGQADYVLIVEFVGIERFEQQASERVESLADDLDHLVSSRGMLVLRSVF
Ga0209941_1047645	Ga0209941_10476452	F025775	MKQFLTFQGFPMVVVVALIVWSWISILSVVIGSLF
Ga0209941_1074535	Ga0209941_10745351	F099558	MTLSNTAYSLVPSIARRDRSTAGRLLSAILSQWPERTRGSPPLPNYLRRDIGLEPLEPSRKYWDIR
Ga0209941_1090409	Ga0209941_10904091	F082508	GSALASSQSAERIEQTASMSSGSPRVRPLPRPGSRPHNPSVTAAPAPEVDTDEQLALVSQDHLRSLHQPLKYGFADRSTARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLEQPTATAIPFSQYRMLHDFGWHESGRNARQALKRTLLNLQEARWEGDVNDSATGRKTHEDHFGIIDRVLWPVVNDGRTER