Sample 3300023558

Basic Information
IMG/M Taxon OID	3300023558 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290744 \| Ga0247526
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	28996861
Sequencing Scaffolds	30
Novel Protein Genes	33
Associated Families	32

Dataset Contents

Total Genome Size

28996861

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	22
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0448

Long. (^o)

13.618

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001024	Metagenome / Metatranscriptome	803	Y
F001380	Metagenome / Metatranscriptome	709	Y
F004183	Metagenome / Metatranscriptome	449	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007739	Metagenome / Metatranscriptome	345	Y
F009335	Metagenome / Metatranscriptome	319	Y
F009688	Metagenome / Metatranscriptome	314	Y
F012024	Metagenome / Metatranscriptome	284	Y
F018933	Metagenome / Metatranscriptome	232	N
F021676	Metagenome / Metatranscriptome	218	Y
F023409	Metagenome / Metatranscriptome	210	Y
F023797	Metagenome / Metatranscriptome	208	Y
F024793	Metagenome / Metatranscriptome	204	Y
F026569	Metagenome / Metatranscriptome	197	Y
F028981	Metagenome / Metatranscriptome	189	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F037019	Metagenome / Metatranscriptome	168	Y
F038944	Metagenome / Metatranscriptome	164	Y
F049826	Metagenome / Metatranscriptome	146	Y
F055924	Metagenome / Metatranscriptome	138	Y
F059538	Metagenome / Metatranscriptome	133	N
F062493	Metagenome / Metatranscriptome	130	Y
F065397	Metagenome / Metatranscriptome	127	Y
F068321	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F070953	Metagenome / Metatranscriptome	122	Y
F077321	Metagenome / Metatranscriptome	117	Y
F089697	Metagenome / Metatranscriptome	108	N
F091140	Metagenome / Metatranscriptome	107	Y
F098663	Metagenome / Metatranscriptome	103	Y
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247526_101018	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	2355	Open in IMG/M
Ga0247526_101113	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	2289	Open in IMG/M
Ga0247526_102775	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1687	Open in IMG/M
Ga0247526_108786	Not Available	892	Open in IMG/M
Ga0247526_109131	Not Available	869	Open in IMG/M
Ga0247526_109295	Not Available	859	Open in IMG/M
Ga0247526_110121	Not Available	813	Open in IMG/M
Ga0247526_110136	Not Available	812	Open in IMG/M
Ga0247526_110224	Not Available	808	Open in IMG/M
Ga0247526_110277	Not Available	806	Open in IMG/M
Ga0247526_110283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	805	Open in IMG/M
Ga0247526_112171	Not Available	714	Open in IMG/M
Ga0247526_112258	Not Available	711	Open in IMG/M
Ga0247526_112395	Not Available	705	Open in IMG/M
Ga0247526_112449	Not Available	703	Open in IMG/M
Ga0247526_114315	Not Available	634	Open in IMG/M
Ga0247526_115585	Not Available	594	Open in IMG/M
Ga0247526_115787	Not Available	588	Open in IMG/M
Ga0247526_116092	Not Available	581	Open in IMG/M
Ga0247526_116203	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	578	Open in IMG/M
Ga0247526_116340	Not Available	575	Open in IMG/M
Ga0247526_116536	Not Available	570	Open in IMG/M
Ga0247526_116669	Not Available	566	Open in IMG/M
Ga0247526_117051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
Ga0247526_117601	Not Available	545	Open in IMG/M
Ga0247526_117929	Not Available	538	Open in IMG/M
Ga0247526_118261	Not Available	531	Open in IMG/M
Ga0247526_118458	Not Available	527	Open in IMG/M
Ga0247526_118508	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium	526	Open in IMG/M
Ga0247526_118785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247526_101018	Ga0247526_1010182	F068861	MPSVTASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247526_101113	Ga0247526_1011131	F098663	MIKEGVFFNISYLTSVQVLHGCRQTVLXKVRLNPLTDEIPVINLYLIINGSDRVPFGAKTSRYGPHELGYRRATKTFTKXRKTVPEXYLL
Ga0247526_102775	Ga0247526_1027751	F030619	AAKLIASTEFPTSAAALDSLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESREIPGGLHYRVGRRFASLDLSKATDGLSHAAIRVVIEGLAARGLIRLADLTMSLRSLGLERGATWSFPDLGDKAGEGSFLRGSPMGTPLSFVVLSWVNAWATKAFSRAITHGDDAVGRYRPGSGELSLYASRVSSVGASLNREKTFTADHSWTACEILALPRKYNEDRMSLFFPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRCRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVQATEQWFQAGGDTHVPLESLLSFKSCLIEDEIRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVALCRPLSRRWGCSALIRWALLSRESKVTVPEDI
Ga0247526_108786	Ga0247526_1087861	F030305	MPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCGSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTFLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVSL
Ga0247526_109131	Ga0247526_1091311	F089697	SGVSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247526_109295	Ga0247526_1092952	F006591	KTGVGARHTLFPMHRSLGAPPSQVGGRLLDASSRGNAELSVSWQDRRPDCSKRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247526_110121	Ga0247526_1101211	F059538	LVNSVVQPLLRPSATPAARLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSHLPVLTGFCCNN
Ga0247526_110136	Ga0247526_1101362	F001024	MRPVTPLAVENGVGKLAAEARQMSARERECGELPSPNLS
Ga0247526_110224	Ga0247526_1102241	F018933	PSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIADCSAFLTPCLVSLADCSVLNT
Ga0247526_110277	Ga0247526_1102771	F007739	TKRTAKNKIDVVCFKIIPGDWGKAGSGWLTWLLLNRAARRGSGGRIHQFLWRCSRTVKMRMRDLAARGN
Ga0247526_110277	Ga0247526_1102772	F021676	MPDGPATRPKTPLAVENGVGKPAAPEKGAPNAGSGKRDWRTP
Ga0247526_110283	Ga0247526_1102831	F070953	MLPFDRGFTRSEGEGGTSCHLPFPGRPGLSQSCSRRVFHTAAL
Ga0247526_110283	Ga0247526_1102832	F038944	MRSRPSHAAKSGVGEHTARESESAQRYAPGKSVWRAP
Ga0247526_112171	Ga0247526_1121711	F023797	MLGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPRLAPQAIFRSLSNLSSSCVAVNVHFQFPT
Ga0247526_112258	Ga0247526_1122581	F009335	MADPELMVKTRIRSHKRVFTWFASRRPQTPAEASSEASLKIQRPQGAGRPCYEAGNSACRGEWRREAGS
Ga0247526_112395	Ga0247526_1123951	F049826	CDFGYALATDSCEGADSVDACTVTALGAITAFAVPDPG
Ga0247526_112449	Ga0247526_1124491	F023797	MPGKPLMLSPFSIRRFGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSLPQLAPQAIFRPLSNLSSSCVAGNVDFQ
Ga0247526_113038	Ga0247526_1130381	F009688	RPALCSARILSEAFQLASAGGCATGLRTRSRHACNFFVRVLTTGSGSATAFDGAFAQGHGSRLFTLKLHFIHSPAVSFLTSPALGSSSRGLPSLVVFPVRILILSRLSASFIWRSQLLFLNPPESSVRASTQ
Ga0247526_114315	Ga0247526_1143152	F102319	MILGPITSWSKSLLRYKTKPMVMDAAAADKTNLMKEEKDGPSRAMLRSILFSVLHV
Ga0247526_115585	Ga0247526_1155851	F024793	VNSASPELSLRFQRSRINQPDPAFPRSPGIIHKLDNFNFTLNR
Ga0247526_115787	Ga0247526_1157871	F028981	LFALSLCQTPCYNNGNCFGATSTRCDITKVQLDAGMTGQCTAGFTEGQTCVNDDDCNAADNLICTKGICVNGTQRGFKCSDNFFCNSQLYSRCVNGKCVEGGATNATCQVNTDCSQISSSKWCLGNTCRVQSNFPCDNTNQCYGNNWICKQVGNECKIRAI
Ga0247526_116092	Ga0247526_1160921	F026569	MHGTEHRVPERRALRLSAPRKPVYPASASSLPSAPQPLILSKTGPFARNGLSLTREGLRLREFRPGVEGPGLPLRSLACRSSCPFGFSAPPPVAGSPQRPAASTPQARCIPYRPALPAVLPACAPLWEFSLPWDQRTGKLRNRSVRLPELPDLRSLPAAFPFKDSATDHRSRSATFPEAC
Ga0247526_116203	Ga0247526_1162031	F065397	VQVRVFVSRLYSPDKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFKAEDDNERFASAEC
Ga0247526_116340	Ga0247526_1163401	F062493	VCRKASIPGQRNRPRGSGTARHPELLNAMFYAEHAGRGQGWELD
Ga0247526_116536	Ga0247526_1165361	F077321	LLSNEGGGEPTGQHPAILVAKLSAVHAGGEFSCEI
Ga0247526_116669	Ga0247526_1166691	F012024	MHGTEHRVSERRALRLLAPRKPFYPASASKLSDAPQPLCLSKTGPFARNGLSLTRMTSACADPMPGSKILACYFAHSLAGLPARSALWLRRQPLVCPSFRLHPRLKPVAFFTGLLCRLCSLPPLPFRSFRSLRIKASTGFATVRSTFRNRPIFVRSPQPFR
Ga0247526_117051	Ga0247526_1170511	F055924	MEGPLVSDTTEVLSGAAPAPEESPIGHPAADPAGTAPRSANRNGGDLSKLLVSDLQRIAQEL
Ga0247526_117601	Ga0247526_1176011	F004183	MERLRGANEDRAIPEGGPNGCEASRSFDPEGAKTPEGERRRAAQPAKQAGKEGNGLEAWMQPEAGANQPLAAELKSRTGRKTGKRVSEVAGQDL
Ga0247526_117929	Ga0247526_1179291	F068321	RMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLHIRSLFLFRRSL
Ga0247526_118261	Ga0247526_1182611	F001380	GFTVRFSDPSACGRSLCNKMLRKNSSSLSAAAFQPATGHSNQRILIGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSQLFRSVRFRGRTGATSMPGTRFPLLSSTLRILSRSPLPFRPSFENPLDQSVRPVPNPKARLTRRPIVPYSPLLLLAIPLRISA
Ga0247526_118458	Ga0247526_1184581	F037019	SPHGPISPAFAGENSGIEPILQATCSWAWARLGSLSVNQQGAAFPHRRYDRDSFRRDRTPNRVAWRFPDWTAVGFAFPSPFLGSAPLGIPLPEHSRLVGLDLTIDGRLSLHGGQITGGDTNPDCQIRRFCAASSGGLVAGRRLSPCPHLFASHGLSLSESRSKLSGAFSDFAGHF
Ga0247526_118508	Ga0247526_1185081	F091140	VALSLSEPLTARSDGGRYPPSRPEESGLSSVAHPSVRAAGPVSRHRSSSQGATAIIA
Ga0247526_118785	Ga0247526_1187852	F023409	MTDHRPTEGPGKETKTSSLRCWAIFRTDRGWERCHLDEHDPATRHHVRDRSWLTAENTPRLRLGQPCGPACTWPDLVIPYRSGTGHRAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023558: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences