NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F049826

Metagenome / Metatranscriptome Family F049826

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F049826
Family Type Metagenome / Metatranscriptome
Number of Sequences 146
Average Sequence Length 41 residues
Representative Sequence KGCDFGYALAANSCEGVTSVDACTVTALDAITAFAVPNPG
Number of Associated Samples 140
Number of Associated Scaffolds 146

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 9.15 %
% of genes near scaffold ends (potentially truncated) 94.52 %
% of genes from short scaffolds (< 2000 bps) 91.78 %
Associated GOLD sequencing projects 135
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.219 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.493 % of family members)
Environment Ontology (ENVO) Unclassified
(24.658 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.904 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 14.71%    β-sheet: 17.65%    Coil/Unstructured: 67.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 146 Family Scaffolds
PF13456RVT_3 21.92
PF00075RNase_H 4.11
PF08238Sel1 1.37
PF14499DUF4437 1.37
PF02381MraZ 0.68
PF02769AIRS_C 0.68
PF13193AMP-binding_C 0.68
PF02467Whib 0.68
PF10099RskA 0.68
PF04909Amidohydro_2 0.68
PF13883Pyrid_oxidase_2 0.68
PF13787HXXEE 0.68
PF00313CSD 0.68
PF13668Ferritin_2 0.68
PF01895PhoU 0.68
PF00150Cellulase 0.68
PF00589Phage_integrase 0.68
PF02954HTH_8 0.68
PF00012HSP70 0.68
PF01494FAD_binding_3 0.68
PF00486Trans_reg_C 0.68
PF04454Linocin_M18 0.68
PF01451LMWPc 0.68
PF02771Acyl-CoA_dh_N 0.68
PF02754CCG 0.68
PF13286HD_assoc 0.68
PF04542Sigma70_r2 0.68
PF04343DUF488 0.68
PF13561adh_short_C2 0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 146 Family Scaffolds
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.37
COG0247Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcFEnergy production and conversion [C] 0.68
COG0443Molecular chaperone DnaK (HSP70)Posttranslational modification, protein turnover, chaperones [O] 0.68
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.68
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.68
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.68
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.68
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.68
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.68
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.68
COG2001MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activityTranslation, ribosomal structure and biogenesis [J] 0.68
COG2048Heterodisulfide reductase, subunit BEnergy production and conversion [C] 0.68
COG2730Aryl-phospho-beta-D-glucosidase BglC, GH1 familyCarbohydrate transport and metabolism [G] 0.68
COG3189Uncharacterized conserved protein YeaO, DUF488 familyFunction unknown [S] 0.68
COG3934Endo-1,4-beta-mannosidaseCarbohydrate transport and metabolism [G] 0.68
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.68


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.22 %
All OrganismsrootAll Organisms41.78 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001213|JGIcombinedJ13530_101181214All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1021Open in IMG/M
3300002162|JGI24139J26690_1084129Not Available571Open in IMG/M
3300003368|JGI26340J50214_10161201Not Available560Open in IMG/M
3300004091|Ga0062387_101304151Not Available574Open in IMG/M
3300004152|Ga0062386_101767533All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300004479|Ga0062595_100425021Not Available964Open in IMG/M
3300004479|Ga0062595_102191700All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300005332|Ga0066388_100192581All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2655Open in IMG/M
3300005345|Ga0070692_10267605All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1030Open in IMG/M
3300005548|Ga0070665_101299184All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium737Open in IMG/M
3300005880|Ga0075298_1032463All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300005921|Ga0070766_10000117All Organisms → cellular organisms → Bacteria30029Open in IMG/M
3300005921|Ga0070766_11104102Not Available547Open in IMG/M
3300006034|Ga0066656_10971406Not Available545Open in IMG/M
3300006086|Ga0075019_11166139Not Available502Open in IMG/M
3300006174|Ga0075014_100941789All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
3300006237|Ga0097621_100598511All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1007Open in IMG/M
3300006797|Ga0066659_11426023Not Available579Open in IMG/M
3300007255|Ga0099791_10315409Not Available746Open in IMG/M
3300008785|Ga0103638_1002767Not Available592Open in IMG/M
3300009629|Ga0116119_1149069All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300010075|Ga0127434_114372Not Available534Open in IMG/M
3300010080|Ga0127448_124791Not Available1585Open in IMG/M
3300010108|Ga0127474_1080273All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300010322|Ga0134084_10115878Not Available870Open in IMG/M
3300010343|Ga0074044_10184490Not Available1389Open in IMG/M
3300010358|Ga0126370_10006021All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6147Open in IMG/M
3300010360|Ga0126372_10313182All Organisms → cellular organisms → Bacteria → Acidobacteria1387Open in IMG/M
3300010857|Ga0126354_1170956Not Available518Open in IMG/M
3300011028|Ga0138577_117479Not Available530Open in IMG/M
3300012189|Ga0137388_10655866All Organisms → cellular organisms → Bacteria → Acidobacteria975Open in IMG/M
3300012208|Ga0137376_11505437All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300012354|Ga0137366_10717773All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium712Open in IMG/M
3300012373|Ga0134042_1220430Not Available526Open in IMG/M
3300012387|Ga0134030_1005507All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300012407|Ga0134050_1070522All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300013296|Ga0157374_12518454All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300014158|Ga0181521_10021583All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae5330Open in IMG/M
3300014162|Ga0181538_10354841Not Available788Open in IMG/M
3300014165|Ga0181523_10393421Not Available773Open in IMG/M
3300014199|Ga0181535_10147313All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1478Open in IMG/M
3300014200|Ga0181526_10531803Not Available744Open in IMG/M
3300015053|Ga0137405_1190100Not Available1633Open in IMG/M
3300015245|Ga0137409_10000190All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis62520Open in IMG/M
3300015371|Ga0132258_11299240All Organisms → cellular organisms → Bacteria → Acidobacteria1839Open in IMG/M
3300016319|Ga0182033_11032927Not Available732Open in IMG/M
3300016371|Ga0182034_11090810Not Available692Open in IMG/M
3300016422|Ga0182039_12250652Not Available503Open in IMG/M
3300016445|Ga0182038_11767366Not Available558Open in IMG/M
3300016698|Ga0181503_1370207Not Available542Open in IMG/M
3300016705|Ga0181507_1143035Not Available606Open in IMG/M
3300017932|Ga0187814_10376325Not Available551Open in IMG/M
3300017934|Ga0187803_10464624Not Available516Open in IMG/M
3300017938|Ga0187854_10226592All Organisms → cellular organisms → Bacteria → Acidobacteria817Open in IMG/M
3300017955|Ga0187817_11135898Not Available502Open in IMG/M
3300017970|Ga0187783_10954678All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium618Open in IMG/M
3300017996|Ga0187891_1311292All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300018035|Ga0187875_10409189Not Available724Open in IMG/M
3300018044|Ga0187890_10734386Not Available558Open in IMG/M
3300018057|Ga0187858_10226411All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300018086|Ga0187769_11180869Not Available579Open in IMG/M
3300019178|Ga0184583_117388Not Available860Open in IMG/M
3300019179|Ga0184593_128238Not Available555Open in IMG/M
3300019181|Ga0184594_114584Not Available557Open in IMG/M
3300019230|Ga0181501_1021287All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300019260|Ga0181506_1050938All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300020583|Ga0210401_10601783Not Available961Open in IMG/M
3300021401|Ga0210393_10963904Not Available691Open in IMG/M
3300021405|Ga0210387_10008403All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7892Open in IMG/M
3300021559|Ga0210409_10473249Not Available1115Open in IMG/M
3300022499|Ga0242641_1016583Not Available713Open in IMG/M
3300022502|Ga0242646_1007110All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium865Open in IMG/M
3300022503|Ga0242650_1008885Not Available720Open in IMG/M
3300022507|Ga0222729_1026534Not Available714Open in IMG/M
3300022508|Ga0222728_1071557All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300022509|Ga0242649_1005315Not Available1218Open in IMG/M
3300022523|Ga0242663_1062085Not Available682Open in IMG/M
3300022531|Ga0242660_1084962Not Available751Open in IMG/M
3300022531|Ga0242660_1148859All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum611Open in IMG/M
3300022711|Ga0242674_1022190All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium750Open in IMG/M
3300022711|Ga0242674_1023171Not Available739Open in IMG/M
3300022714|Ga0242671_1114264All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300022716|Ga0242673_1098820Not Available562Open in IMG/M
3300022718|Ga0242675_1047552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia709Open in IMG/M
3300022726|Ga0242654_10441192All Organisms → cellular organisms → Bacteria → Proteobacteria506Open in IMG/M
3300023551|Ga0247546_105888Not Available521Open in IMG/M
3300023558|Ga0247526_112395Not Available705Open in IMG/M
3300023666|Ga0247531_112148Not Available669Open in IMG/M
3300024288|Ga0179589_10563992All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300025527|Ga0208714_1038113Not Available1089Open in IMG/M
3300025650|Ga0209385_1014998All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3189Open in IMG/M
3300025711|Ga0207696_1121260All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium705Open in IMG/M
3300025878|Ga0209584_10325074Not Available592Open in IMG/M
3300025981|Ga0207640_10735593All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium849Open in IMG/M
3300026502|Ga0255350_1053454Not Available954Open in IMG/M
3300026515|Ga0257158_1046420Not Available795Open in IMG/M
3300026849|Ga0207804_105343All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300026908|Ga0207787_1030038Not Available534Open in IMG/M
3300026910|Ga0207840_1022880Not Available618Open in IMG/M
3300026928|Ga0207779_1014374Not Available1064Open in IMG/M
3300026990|Ga0207824_1016918Not Available780Open in IMG/M
3300027031|Ga0208986_1035691All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
3300027330|Ga0207777_1005412All Organisms → cellular organisms → Bacteria2956Open in IMG/M
3300027330|Ga0207777_1060625Not Available665Open in IMG/M
3300027768|Ga0209772_10252601All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7559Open in IMG/M
3300027812|Ga0209656_10195641All Organisms → cellular organisms → Bacteria983Open in IMG/M
3300027826|Ga0209060_10140456Not Available1122Open in IMG/M
3300027867|Ga0209167_10375794Not Available774Open in IMG/M
3300027889|Ga0209380_10799006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300027898|Ga0209067_10977682Not Available500Open in IMG/M
3300028857|Ga0302289_1158108All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium521Open in IMG/M
3300028868|Ga0302163_10142804All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300029817|Ga0247275_1023944All Organisms → cellular organisms → Bacteria1898Open in IMG/M
3300029984|Ga0311332_10173017Not Available1614Open in IMG/M
3300030880|Ga0265776_103035Not Available800Open in IMG/M
3300030886|Ga0265772_105188All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2579Open in IMG/M
3300030888|Ga0265769_105312Not Available780Open in IMG/M
3300030982|Ga0265748_106052Not Available592Open in IMG/M
3300031017|Ga0265744_107066Not Available643Open in IMG/M
3300031043|Ga0265779_105502Not Available695Open in IMG/M
3300031231|Ga0170824_103604873All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300031543|Ga0318516_10127056All Organisms → cellular organisms → Bacteria1456Open in IMG/M
3300031679|Ga0318561_10405318Not Available749Open in IMG/M
3300031726|Ga0302321_102058140Not Available663Open in IMG/M
3300031770|Ga0318521_10106606All Organisms → cellular organisms → Bacteria1550Open in IMG/M
3300031833|Ga0310917_10628940Not Available728Open in IMG/M
3300031879|Ga0306919_11033201Not Available628Open in IMG/M
3300031880|Ga0318544_10299551Not Available624Open in IMG/M
3300031910|Ga0306923_10929820Not Available950Open in IMG/M
3300031946|Ga0310910_10210365Not Available1511Open in IMG/M
3300032072|Ga0326631_109927Not Available622Open in IMG/M
3300032089|Ga0318525_10399146Not Available705Open in IMG/M
3300032180|Ga0307471_102517664Not Available651Open in IMG/M
3300032261|Ga0306920_101564293All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum marinum939Open in IMG/M
3300032515|Ga0348332_14009730All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter modestus620Open in IMG/M
3300032515|Ga0348332_14388840All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1300Open in IMG/M
3300032828|Ga0335080_10262582All Organisms → cellular organisms → Bacteria1884Open in IMG/M
3300032892|Ga0335081_12559240Not Available525Open in IMG/M
3300032898|Ga0335072_11508345Not Available573Open in IMG/M
3300033134|Ga0335073_11101655Not Available809Open in IMG/M
3300033158|Ga0335077_10574993All Organisms → cellular organisms → Bacteria1180Open in IMG/M
3300034820|Ga0373959_0230106All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.49%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.90%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.16%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.48%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.79%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.42%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.42%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.42%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil2.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.74%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.74%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.05%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.05%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.05%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.37%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.37%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.37%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.37%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.37%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.68%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.68%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.68%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.68%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.68%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.68%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.68%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.68%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.68%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.68%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.68%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.68%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.68%
Wetland SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil0.68%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002162Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21AEnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005880Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300008785Microbial communities from wetland soil in Czech Republic - R1_cDNAEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300010075Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010080Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010108Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011028Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 64 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012373Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012387Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012407Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300016698Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016705Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300019178Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019179Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019181Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019230Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022499Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022502Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022503Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022507Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022508Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022509Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022711Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022716Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022718Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023551Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023558Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023666Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025527Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025650Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)EnvironmentalOpen in IMG/M
3300025711Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026502Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1EnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026849Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)EnvironmentalOpen in IMG/M
3300026908Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes)EnvironmentalOpen in IMG/M
3300026910Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)EnvironmentalOpen in IMG/M
3300026928Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)EnvironmentalOpen in IMG/M
3300026990Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)EnvironmentalOpen in IMG/M
3300027031Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027330Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028857Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_2EnvironmentalOpen in IMG/M
3300028868Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3EnvironmentalOpen in IMG/M
3300029817Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25EnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030880Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030886Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030888Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030982Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031017Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031043Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032072Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10118121433300001213WetlandVAKNRKGCDFGYAPAADSCEGVSGVDACTVAALDTITAF
JGI24139J26690_108412913300002162Arctic Peat SoilKTASNRKGCDFGYALAADSCEGATGVDACTVTALGAITAFAVPNPG*
JGI26340J50214_1016120123300003368Bog Forest SoilGCDFGYALADNSCEGVPGVDACTVTAFDAVTAFAVPNPN*
Ga0062387_10130415113300004091Bog Forest SoilAKGKGCDFGYALADNSRERVTSVDACTVTALDAVTAFAVPNPN*
Ga0062386_10176753323300004152Bog Forest SoilVVGRIATRRAIEKGCDFGYALAAGSCERVTGVDACTVTALGAITAF
Ga0062595_10042502123300004479SoilKGCDIGYALATRSCEGACSVDACTVTALDVISAFAVPDPN*
Ga0062595_10219170033300004479SoilMREGNRKGRDIGYALAASSCEEANSVDACTITALDVIAAFAV
Ga0066684_1099774813300005179SoilVVTGKIKGRDIGYAPTINSCEGVNSVDTCTITALDVITAFAVPNPNCS
Ga0066388_10019258133300005332Tropical Forest SoilVEDNREEPGKKRKGCDLGYALARYSCERVAGVDACTVTALDVITAFAVPDPG*
Ga0070692_1026760513300005345Corn, Switchgrass And Miscanthus RhizosphereKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPNPG*
Ga0070665_10129918423300005548Switchgrass RhizosphereVTKKLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVP
Ga0066703_1054346523300005568SoilGYALATGSCEEANSVDAYTVTTLDVITAFAVQQG*
Ga0075298_103246313300005880Rice Paddy SoilKGRDIGYALAASSCEGANNVEACTVTTLDAITAFAVPDPN*
Ga0070766_1000011723300005921SoilLGNRKGCDFGYALADNSCEGALGVDACTVTALDAATAFAVPNPG*
Ga0070766_1110410213300005921SoilLAADSCEGVSSVDARTVAAPDAITAFAVPNDERPL*
Ga0066656_1097140613300006034SoilKGRDIGYALAASSCEEANNVETCTVTTPDAIAAFAAPNPG*
Ga0075019_1116613913300006086WatershedsKGKGCDFGYALADNSRERVPSVDACTVTALDAITAFAVPNPG*
Ga0075014_10094178913300006174WatershedsKGKGCDFGYALADNSRERVPGVDACTVTALDAITAFAVPNPG*
Ga0097621_10059851113300006237Miscanthus RhizosphereKLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPNPG*
Ga0066659_1142602323300006797SoilCDIGYALAASSCEGANNVDACTVTALDVITVFTVPNPNCSSQS*
Ga0099791_1031540923300007255Vadose Zone SoilYALAASSCEEANNVETCTVTTPDATAAFAAPNPG*
Ga0103638_100276713300008785Wetland SoilKGCDFGYALADNSCERVPGVDACTVAALDVTTAFADS*
Ga0066709_10303063623300009137Grasslands SoilVNEIDGKRHKEVKGRDIGYALAAHSCEGVSRVETCTVTAPDVITTFAVPN
Ga0116119_114906913300009629PeatlandLSDYRWRVLGRTNGKGCDFGYALAANSCEGVTGVDACTVTAFDAITA
Ga0127434_11437213300010075Grasslands SoilDIGYALAAGSCEEANNVETCTVTTPDATTAFAVPNPG*
Ga0127448_12479123300010080Grasslands SoilYALVASSCEEANNVETCTVTTPDAIAAFAAPNPG*
Ga0127474_108027323300010108Grasslands SoilDIGYALAADSCEEANNVETCTVTTPDAITAFAVPNPG*
Ga0134084_1011587813300010322Grasslands SoilGRDIGYALAAGSCEEANNVETCTVTTPDATTAFAVPNPG*
Ga0074044_1018449033300010343Bog Forest SoilAASINGALKHRKGCDFGYASAANSCEGVSGVDACIVTALDVITGFAVPSPN*
Ga0126370_1000602133300010358Tropical Forest SoilVEDNREEPRKKRKGCDLGYALARYSCERVAGVDACTVTALDVITAFAVPDPG*
Ga0126372_1031318233300010360Tropical Forest SoilEDNREEPRKKRKGCDLGYALASYSCERVAGVDACTVTALDVITAFAVPDPG*
Ga0126354_117095613300010857Boreal Forest SoilGCDFGYALADNSCEGAPGVDACTVTALDAATAFAVPNPG*
Ga0138577_11747913300011028Peatlands SoilIGYALANDSCEGAPGVDACTVTALGAITAFAVPDPG*
Ga0137388_1065586613300012189Vadose Zone SoilKGRDIGYALAASSCEGANNVETCTVTTLDATTAFAVPNPG*
Ga0137376_1150543713300012208Vadose Zone SoilRNGKGCDIGYALAVCSCEEADSVDACTVTALDATTAFAVPNPG*
Ga0137366_1071777313300012354Vadose Zone SoilIGYALAISSCEGANSVDACTVTALDAITAFAVPNPNCSSQS*
Ga0134042_122043013300012373Grasslands SoilMRVLAVRSCEEANSVDACTVTTLDVITAFAVPNLNCP
Ga0134030_100550723300012387Grasslands SoilDIGYALAASSCEEANNVEKCTVTTLDVTTAFAVPNPG*
Ga0134050_107052213300012407Grasslands SoilIGYALAANSCEGANNVETCTVTTLDVTTAFAVPNPG*
Ga0157374_1251845413300013296Miscanthus RhizosphereVTKKLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPN
Ga0181521_1002158363300014158BogGYALADNSRERVPSVDACTVTALDAITAFAVPNPG*
Ga0181538_1035484123300014162BogYALAANSCEGVTSVDACTVTALDAITAFAVPNPG*
Ga0181523_1039342113300014165BogKGCDFGYAPSDNSCERVPGLDACTVAALDVTTAFADS*
Ga0181535_1014731313300014199BogKGCDFGYALAANSCEGVTSVDACTVTALDAITAFAVPNPG*
Ga0181526_1053180313300014200BogFGYALAANSCEGVTSVDACTVTALDAITAFAVPNPG*
Ga0137405_119010013300015053Vadose Zone SoilASSCEEACEEADSVDACTVTALDATTAFAVPNPG*
Ga0137409_1000019013300015245Vadose Zone SoilGYALAASSCEEANSVDACTVTALDATTAFAVPYPG*
Ga0132258_1129924043300015371Arabidopsis RhizosphereLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPNPG*
Ga0182033_1103292713300016319SoilVSRSRREGCGIGYALATNSCERVNSMDACTVTAFGAITAFAVPSPGSSLAT
Ga0182034_1109081013300016371SoilKNRRDNLKGCDFGYALAGNSCEEVTSVDACTVTAPDVITAFTVPGPG
Ga0182039_1225065213300016422SoilGCDFGYALASNSCEGVPSVDACTVTAPDVITAFAVPDPG
Ga0182038_1176736623300016445SoilRDNLKGCDFGYALAGNSCEEVPSVDACTVTAPDVITAFAVPNPG
Ga0181503_137020713300016698PeatlandCDFGYALAANSCEGVTGVDACTVTALDAITAFAVPNPG
Ga0181507_114303513300016705PeatlandGYALAANSCEGVTSVDACTVTALDAITAFAVPNPG
Ga0187814_1037632513300017932Freshwater SedimentGYAPAGNSHERVPSVDACTVTALDVITAFAVPNPG
Ga0187803_1046462413300017934Freshwater SedimentDIGYALAADSCEGAHSVDACTVTAPEAITTFAVPNPN
Ga0187854_1022659213300017938PeatlandKGCDFGYALAANSCEGVTSVDACTVTAFDAITAFAVPNPG
Ga0187817_1113589813300017955Freshwater SedimentKGKGCDFGYALADNSRERVPSVDACTVTALDAITAFAVPDPG
Ga0187783_1095467813300017970Tropical PeatlandGCDFGYAPASNSRERVPSVDACTVTALDAITAFAVPNPG
Ga0187891_131129223300017996PeatlandVGSNRKGCDIGYGLAANSCEGVNSVDACTVTALDAITAFAVPNPGG
Ga0187875_1040918923300018035PeatlandWRVLGRTNGKGCDFGYALAANSCEGVTGVDACTVTAFDAITAFAVPNPG
Ga0187890_1073438613300018044PeatlandGCDFGYALAANSCEGVTSVDACTVTAFDAITAFAVPNPG
Ga0187858_1022641113300018057PeatlandKGKGCDFGYALADNSRERVPSVDACTVTALDAITAFAVPNPG
Ga0187769_1118086913300018086Tropical PeatlandMKGCDIGYVPAADSGEGVDNVETCTVTAPGAITAFAVPNPGN
Ga0184583_11738813300019178SoilIGYALAVGSCEGANDVESCTITAFDVITAFAVPNPGHILAE
Ga0184593_12823813300019179SoilFGYALATNSCEGATGVDACTVTALQAITAFAVPNPG
Ga0184594_11458413300019181SoilDFGYALAANSCEGVTSVDARTVTALDAITAFAVPNPG
Ga0181501_102128723300019230PeatlandDFGYGLAADSCEGVLGVDACTVTALGAISAFAASDPG
Ga0181506_105093813300019260PeatlandYALAIRSCERAHSVEACTVTALDAITAFAVPNPNQFPA
Ga0210401_1060178313300020583SoilEFEEKGKGRDIGYALAVNSCEGANDVESCTITAFDVITAFAVPYPGHILAE
Ga0210393_1096390423300021401SoilYALAVNSCEGAGDVESCTITAFDVITAFAVPYPGHILAE
Ga0210387_10008403133300021405SoilERKRKGRDIGYALAVNSCEGAGDVESCTITAFDVITAFAVPYPGHILAE
Ga0210409_1047324933300021559SoilKGCDFGYALAGNSCEGAPGVDACTVTALDVTTAFAVPNLG
Ga0242641_101658323300022499SoilCDFGYALAANSCEGATGVDACTVTALCAITAFADRD
Ga0242646_100711023300022502SoilDIGYALADSSCEGAPSVDACTVTALDAITAFAVPYPNCPSQFQPG
Ga0242650_100888513300022503SoilFGYALAANSCEGVAGVDACTVTAFRAINAFAVPDPG
Ga0222729_102653413300022507SoilDFGYALAADSCEGADSVDACTVTALGAIAAFAVPDPG
Ga0222728_107155723300022508SoilAAGSCEGANDVESCTITAFDVITAFAVPNPGHILAE
Ga0242649_100531523300022509SoilDFGYALADNSCEGALGVDACTVTALDAATAFAVPNPG
Ga0242663_106208513300022523SoilDFGYALAAASCEGATGVDACTVTALGAITAFAVPNPG
Ga0242660_108496213300022531SoilDFGYALADNSCEGATGVDACTVTALGAITAFAVPNPG
Ga0242660_114885913300022531SoilIGYALAASSCEEANSVDACTVTALDATTAFAVPNPG
Ga0242674_102219013300022711SoilGYALAASSCEGAFSVDACTVTALDAITAFAVPNPG
Ga0242674_102317123300022711SoilYALAVNSCEGAGDVESCTITAFDVITAFAVPYPGLILAD
Ga0242671_111426413300022714SoilDIGYALAASSCEGANNVDACTVTALDAITVFTVPNPNCSSQS
Ga0242673_109882013300022716SoilDIGYAIAVNSCEGAGDVESCTITAFDVITAFAVPYPGLILAD
Ga0242675_104755223300022718SoilENARKGKGRDLGYALAVNSCEGAGDVESCTITAFDVITAFAVPNPGHILAE
Ga0242654_1044119213300022726SoilDIGYALAASSCEEANSVDACTVTAFDAITAFAVPNPG
Ga0247546_10588813300023551SoilDFGYALAAASCEGATGVDACTVTALGAITAFAVPDPG
Ga0247526_11239513300023558SoilCDFGYALATDSCEGADSVDACTVTALGAITAFAVPDPG
Ga0247531_11214813300023666SoilDFGYALATDSCEGADSVDACTVTALGAITAFAVPDPG
Ga0179589_1056399213300024288Vadose Zone SoilDIGYALAASSCEEANNVETCTVTTLGATTAFAVPNPG
Ga0208714_103811313300025527Arctic Peat SoilGYALAADSCEGATGVDACTVTALGAITAFAVPNPG
Ga0209385_101499813300025650Arctic Peat SoilAKGKGCDFGYALADNSRERVPSVDACTVTALDAVTAFADPNPN
Ga0207696_112126013300025711Switchgrass RhizosphereGYALAARSCEGADCVDACTVTALDVITAFAVPNPG
Ga0209584_1032507413300025878Arctic Peat SoilDFGYALAADSCEGATGVDACTVTALGAITAFAVPDPG
Ga0207690_1098978213300025932Corn RhizosphereDCGCALANGSCEEANSVDAYTVPPLDVITAFAVQQG
Ga0207640_1073559313300025981Corn RhizosphereKKKLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPNPG
Ga0255350_105345413300026502SoilKGCDFGYALAANSCEGVTGVDACTVTAFEAITAFAVPNPG
Ga0257158_104642023300026515SoilSRNKNGKGCDIGYALAASSCEEANSVDACTVTALDATTAFAVPNPG
Ga0207804_10534323300026849Tropical Forest SoilMRAVFPAKRKGCDFGYALADNSCERVPSVDACTVAALDVITAFT
Ga0207787_103003813300026908Tropical Forest SoilGYALADNSCERVPSVDACTVAALDVITAFTVPDLG
Ga0207840_102288023300026910Tropical Forest SoilVFQTKKKGCDFGYALADNSCERVPGVDACTVAALDVITAFTVPDLG
Ga0207779_101437413300026928Tropical Forest SoilCDFGYALADNSCERVPGVDACTVAALDVITTFAVPDLG
Ga0207824_101691813300026990Tropical Forest SoilIRAVFPAKRKGCDFGYALADNSCERVPSVDACTVAALDVITAFTVPDLG
Ga0208986_103569113300027031Forest SoilMEVFSEKRYKNSKGCDIGYALAANSCEGANNVDACTVTALDATTAFAVPDPGLLLA
Ga0207777_100541243300027330Tropical Forest SoilKKGCDFGYALADNSCERVPGVDACTVAALDVITTFAVPDLG
Ga0207777_106062523300027330Tropical Forest SoilKKGCDFGYALADNSCERVPGVDACTVAALDVITAFTVPDLG
Ga0209772_1025260113300027768Bog Forest SoilSFTGSLRGNIKGRDIGYALAASSCEGANNVESCTITAFDVITAFAVPNPGHILAD
Ga0209656_1019564113300027812Bog Forest SoilLSAKVKGCDFGYALADNSCEGVPGVDACTVTAFDAVTAFAVPNPN
Ga0209060_1014045623300027826Surface SoilMLGGLAEGRNGKGRDIGYALAANSCEGVYSVESCTITALDVISAFAVPDPGYILAE
Ga0209167_1037579423300027867Surface SoilDFGYALAAGSCERALSVEACTVTALDAITAFAVPNPG
Ga0209380_1079900623300027889SoilKGCDIGYALAVNSCEGANDVESCTITAFDVITAFAVPNPGHILAE
Ga0209067_1097768213300027898WatershedsKKKGRDFGYALASNSCEEVPGVDACTVTALQAVTAFAVPNPN
Ga0302289_115810813300028857FenHVKGRCPGMGNRKGCDFGYALAGNSCEGAPGVDACTVTALDAVTAFAVPNPG
Ga0302163_1014280423300028868FenMGNRKGCDFGYALAGNSCEGAPGVDACTVTALDAVTAFAVPN
Ga0247275_102394453300029817SoilCDIGYALTADSCEGVNSVEACTVTAPDAITAFAVPNPN
Ga0311332_1017301733300029984FenKGCDFGYALAGNSCEGAPGVDACTVTALDAVTAFAVPNPG
Ga0265776_10303513300030880SoilDFGYALADNSCEGALGVDACTVTALDAATAFADPNPG
Ga0265772_10518813300030886SoilLATSSCEGANSVEACTVTALDAITAFAVPNPNYRTGN
Ga0265769_10531213300030888SoilLAASSCEEATDVDACTVTALDAITAFAVPNPNWSSQT
Ga0265748_10605213300030982SoilDFGYALAANSCEGVASVDACTVTAFDAITAFAVPNPG
Ga0265744_10706613300031017SoilDFGYALAANSCEGVTSVDACTVTALDAITAFAVPNPG
Ga0265779_10550213300031043SoilFGYALAAASCEGATGVDACTVTALGAITAFAVPDPG
Ga0170824_10360487313300031231Forest SoilAASSCEGANNVDACTVTALDAITVFTVPNPNCSSQS
Ga0318516_1012705613300031543SoilIGQWAKGKGCDFGYATASNSRERATSVDACTVTALDVITAFAVPDPG
Ga0318561_1040531813300031679SoilEEPRKKRKGCDLGYALARYSCERVAGVDACTVTALDVITAFAVPDPG
Ga0302321_10205814013300031726FenAVHVKGRCPGMGNRKGCDFGYALAGNSCEGAPGVDACTVTALDAVTAFAVPNPG
Ga0318521_1010660633300031770SoilEANCSGERGEDNREEPRKKRKGCDLGYALARYSCERVAGVDACTVTALDVITAFAVPDPG
Ga0310917_1062894013300031833SoilFGYALAGNSCEEVTSVDACTVTAPDVITAFTVPGPG
Ga0306919_1103320113300031879SoilCDFGYALAGNSCEEVTSVDACTVTAPDVITAFTVPGPG
Ga0318544_1029955113300031880SoilKGCDFGYALASSSCEGAPSVDACTVTALDVITAFAVPDPG
Ga0306923_1092982013300031910SoilRKGCDFGYALACYSCERVAGVDACTVTALDVITAFAIPDPG
Ga0310910_1021036513300031946SoilCDFGYALACYSCERVAGVEACTVTALDVITAFAIPDPG
Ga0326631_10992723300032072SoilCDFGYALATNSCEGATGVDACTVTALQAITAFAVPNPG
Ga0318525_1039914613300032089SoilNREEPRKKRKGCDLGYALARYSCERVAGVDACTVTALDVITAFAVPDPG
Ga0307471_10251766423300032180Hardwood Forest SoilRRAGLWGNRKGRDIGYALAVNSCEGASDVESCTITAFDVITAFAVPNPGHILAE
Ga0306920_10156429313300032261SoilVLENRKGCDFGYALACYSCERVAGVDACTVTALDVITAFA
Ga0348332_1400973013300032515Plant LitterYALAASSCEEATDVDACTVTALDAITAFAVPNPNWSSQT
Ga0348332_1438884013300032515Plant LitterLAASSCEGAFSVDACTVTALDAITAFAVPNPNCPSQF
Ga0335080_1026258243300032828SoilLTEEVCREKLKGCDIGYGLAASSCEGVDNVDACTVTAPDAIAAFA
Ga0335081_1255924013300032892SoilAANSCEGADSVESCTITALDVITAFAASNPSYILAE
Ga0335072_1150834513300032898SoilRENGKGCDFGYALAANSCEGVTGVDACTVTALDAITTFAVPDPG
Ga0335073_1110165513300033134SoilLKRRENGKGCDFGYALAANSCEGVTGVDACTVTAHDAITAFAVPDPG
Ga0335077_1057499323300033158SoilGYAPAGNSRERVPRVDACTVTALDVITAFAVPNPG
Ga0373959_0230106_369_5003300034820Rhizosphere SoilKKLKGCDIGYALAARSCEGADCVDACTVTALDVITAFAVPNPG


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