NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023201

3300023201: Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? PN



Overview

Basic Information
IMG/M Taxon OID3300023201 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133503 | Gp0295770 | Ga0256614
Sample NameActivated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? PN
Sequencing StatusFinished
Sequencing CenterArgonne National Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size416988662
Sequencing Scaffolds22
Novel Protein Genes22
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Kouleothrix → Kouleothrix aurantiaca1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin3971
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePpcp Degradation By Aerobic Enrichment Cultures (Carbon Source)
TypeEngineered
TaxonomyEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationFort Collins, Colorado, USA
CoordinatesLat. (o)40.585258Long. (o)-105.084419Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002323Metagenome / Metatranscriptome571Y
F002371Metagenome / Metatranscriptome566Y
F002525Metagenome / Metatranscriptome552Y
F003289Metagenome / Metatranscriptome495Y
F006745Metagenome365Y
F007648Metagenome347Y
F010005Metagenome / Metatranscriptome310Y
F018391Metagenome / Metatranscriptome235Y
F018742Metagenome / Metatranscriptome233Y
F034611Metagenome / Metatranscriptome174Y
F038468Metagenome / Metatranscriptome166Y
F044511Metagenome / Metatranscriptome154Y
F048325Metagenome / Metatranscriptome148Y
F050037Metagenome / Metatranscriptome146Y
F064603Metagenome / Metatranscriptome128Y
F071767Metagenome122Y
F077430Metagenome117Y
F081567Metagenome / Metatranscriptome114Y
F083833Metagenome112Y
F102689Metagenome / Metatranscriptome101Y
F103024Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256614_1003286Not Available504Open in IMG/M
Ga0256614_1023662Not Available754Open in IMG/M
Ga0256614_1069377All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1175Open in IMG/M
Ga0256614_1072326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1468Open in IMG/M
Ga0256614_1079304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium904Open in IMG/M
Ga0256614_1079771All Organisms → cellular organisms → Bacteria → Terrabacteria group799Open in IMG/M
Ga0256614_1083915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi545Open in IMG/M
Ga0256614_1128903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Kouleothrix → Kouleothrix aurantiaca747Open in IMG/M
Ga0256614_1146387All Organisms → cellular organisms → Bacteria3843Open in IMG/M
Ga0256614_1153394All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium893Open in IMG/M
Ga0256614_1155413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium905Open in IMG/M
Ga0256614_1216776All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin397713Open in IMG/M
Ga0256614_1226616All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium963Open in IMG/M
Ga0256614_1238112All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes804Open in IMG/M
Ga0256614_1291372All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1005Open in IMG/M
Ga0256614_1333653All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1452Open in IMG/M
Ga0256614_1370759All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium539Open in IMG/M
Ga0256614_1403650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1318Open in IMG/M
Ga0256614_1422880All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae609Open in IMG/M
Ga0256614_1469384All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1011Open in IMG/M
Ga0256614_1470145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella2520Open in IMG/M
Ga0256614_1544547Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256614_1003286Ga0256614_10032862F048325MEEEPKTELEWNLESAEVAYSVIARYVEHTQISGILIAVLASALGEERVTPIVESGHWQGYMASKREIAEARNDIEKLTALIERMRTPRS
Ga0256614_1023662Ga0256614_10236621F003289VXGNITIEANLQTNFNVGFTNMKSDVLIHLTQXQYXXWFXFGLLXSFYYLVILRIVRFRSLKFRPRLATSYRPHGKXGDLIVCIIPVSXCANIISNSNFILRMIEXQSEAGLLTVRIRGKQXYXIYKFELKTFTDILTVPKNIGRNKXQISTPGDLQVAEDYLQILQLRSSNRWVNELXNEISKDTYEAKDVQLVSPQEQLKFNFFKNFEENLNFSELEENNLIPSNLLEDSLENLFPENYN
Ga0256614_1069377Ga0256614_10693772F010005PGCNAAGYFYGDTPSGSNWSFNRKEDFSESVAMYCGWARENELSRTAHGRIERYLLPNGTKDPIYGITDNWSDYAAYFYPQNGDYTKTQRWQFIKQLMQDQIQIK
Ga0256614_1072326Ga0256614_10723264F102689MGLLDGLILKLVMEVLEAVLSEITKQVNRVRSEVLNEMTKMVSSGFDDFWRGEDADQFKEKILKMAVPKAQDIVGIVGKVGGGIKQASDIIQNADKKATQIVGDIASEFSKI
Ga0256614_1079304Ga0256614_10793041F007648MAKELAPDQQIWVMTTEGAGLTGYNRQYLEKLANKNLRLPEDEREIKVRKRGGRFELWLPDLLRYIEEIGYGPHQDKP
Ga0256614_1079771Ga0256614_10797711F077430MYYIVEITAQGIETFLEGFEDVGEAWDTVSRLRCEARRQRRNVRYEVR
Ga0256614_1083915Ga0256614_10839151F002525VWVGVDNAWEQGKLEARKMLENAAESHTSGARFVGL
Ga0256614_1128903Ga0256614_11289031F071767MNEDELIEEISHHDNLLRIHRPFVRPLQLQIAQDDLRAELVRLERAVRDLRARLRRSQRRRGTG
Ga0256614_1146387Ga0256614_11463872F081567MRVAIKATEEAIIRLLKAGHPLPGEVVDRELETRLPVFQSVEAVPVKTYGLEGLGRIVVARGRKDVWFVDIKRKDGKLSLKDGESFLDLRDKLQQRYPGQKVTGWLVTTADVDTKAKSAIAEKGCFATAGAAKR
Ga0256614_1153394Ga0256614_11533941F018742IAAAKPISIEVAPAGVQSAEKALDDAGLQYSLRRVEDHGGAVQRCVITVPPAIPAKVSFHADYVTGVVTVPLVNVDRFDRVTLEFHSQAIEDAVLDDLLKFILGRDQSFLRRAPLAGLHGIARG
Ga0256614_1155413Ga0256614_11554132F007648MAIEIAPEQEIWVMTTEGAEFTGYNRYYLEKLANKMSKLPEAERQIKVRKRLGRHELWLPDLLRYIEEIGYGPHHDKK
Ga0256614_1216776Ga0256614_12167763F002371MKLQPKKKKETRGGTRQGSGAKPKYNEGTKTVAFRCPLSKVDELKLVVKSKLFEWLVK
Ga0256614_1226616Ga0256614_12266161F103024MRTSRRLTHVALALFALVLMSTAALAADPGLVYPPQSEVSDQKAGSVLVYNFYTSGATSGNAQNTRINITNTSTSSAAFVHLYFVGETCSIADSFICLTATQTASFLASDVDPGISGYIVAVAVDGVNGCPFAFNWLIGDEYVKLTTGHAANLGAEAFSALYAGVLPGCDANSTTATLNFNGLFGGYNLVPAALAGSNVPSRADGNDTIVILNRIGGNLGIGAST
Ga0256614_1238112Ga0256614_12381122F038468MPTAKFTHEPGTPEYQASEWLMTIHNASRELDFAISNSPNPAEYVDKLKERVRRDYEQNREQMGWSERTRDIADRSLNVLLETLKLPNM
Ga0256614_1291372Ga0256614_12913721F018391TTTIEHEYMLTLLLQVMHAGNMTARHLEWVAGELEEWAAPLRFALEPSSVTSFYVDLASREGVKRRGPSPLEGRVLFLDTRPLHSVLQQNALMLEQKIKGQPLSDRTPRRTEQLGLLTRLASQVDPEFKPFARRGERTAAAGTVDAIVGFGKISAYLREEDTTPIPQLESGKSFGGTMELAVFGRMRNEADRRIELVRRRFAQFAAPGGPWEIKDVSQTGYRLLAPMSAASILTLGTLAAIRGHGDPAWTLGIVRRIRRMTADRAEIGMQVIANTLVGVDLIERGKINEAYSVDGEGTASAGRRFQGLLLSLRTREGKAEVQSLIVPAAEFQPSR
Ga0256614_1333653Ga0256614_13336533F064603MTIKKFDYSKSTEDIFYKIIYPIYAKEFLYGNSYENFAFTVSANFILNAPQWEYILEHWEQKESVLTYETK
Ga0256614_1370759Ga0256614_13707592F083833GDADVAKAVAPVLAARKARMLGALIKGLETDDDTHARRILELVNALPDAAEILIDAFASPAENVQVNAAIGIGMLGEAKAGTAGRKTLEGARTGGFARTREAVFKALAMLKG
Ga0256614_1403650Ga0256614_14036501F044511PDAGDSGEIPSSFLRLIIFPVGRRSAVRPSAGNANR
Ga0256614_1422880Ga0256614_14228801F034611LHHFILKLTEPLTPVQQKLLLTFWSHACSTDLPASLLHRCNSILLQTGRQPMETLLMEMEIY
Ga0256614_1469384Ga0256614_14693841F002323MFGFLTPGAKEIADPLVSVKTASAWLRQLPPLDVIGRQQHVMGALDAMRQSPRAVDPARAQAVQFLDAALGADRRQLIKQYVENYDAAPRLAERIWQAIYDLSQGFIYTYQTALEASLVAHNNPRWKGIPAVLFARLLHYYGTDAKLRVFRFERWIPRKWVELHRTYLRASELGLDRVPAVLAGAGA
Ga0256614_1470145Ga0256614_14701452F006745MRTSAKARRTSSAVVLYVIILVAFQVFLITVAVEAFQTDTESLAWATAAVSVALFAAAAAFLRYLRP
Ga0256614_1544547Ga0256614_15445471F050037MNKIKNFFLNDETGLELSEYAVAAALIAVVCVAAFTALSGGIGDA

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