| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023201 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133503 | Gp0295770 | Ga0256614 |
| Sample Name | Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? PN |
| Sequencing Status | Finished |
| Sequencing Center | Argonne National Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 416988662 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 22 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Kouleothrix → Kouleothrix aurantiaca | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin397 | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Fort Collins, Colorado, USA | |||||||
| Coordinates | Lat. (o) | 40.585258 | Long. (o) | -105.084419 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002323 | Metagenome / Metatranscriptome | 571 | Y |
| F002371 | Metagenome / Metatranscriptome | 566 | Y |
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F003289 | Metagenome / Metatranscriptome | 495 | Y |
| F006745 | Metagenome | 365 | Y |
| F007648 | Metagenome | 347 | Y |
| F010005 | Metagenome / Metatranscriptome | 310 | Y |
| F018391 | Metagenome / Metatranscriptome | 235 | Y |
| F018742 | Metagenome / Metatranscriptome | 233 | Y |
| F034611 | Metagenome / Metatranscriptome | 174 | Y |
| F038468 | Metagenome / Metatranscriptome | 166 | Y |
| F044511 | Metagenome / Metatranscriptome | 154 | Y |
| F048325 | Metagenome / Metatranscriptome | 148 | Y |
| F050037 | Metagenome / Metatranscriptome | 146 | Y |
| F064603 | Metagenome / Metatranscriptome | 128 | Y |
| F071767 | Metagenome | 122 | Y |
| F077430 | Metagenome | 117 | Y |
| F081567 | Metagenome / Metatranscriptome | 114 | Y |
| F083833 | Metagenome | 112 | Y |
| F102689 | Metagenome / Metatranscriptome | 101 | Y |
| F103024 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256614_1003286 | Not Available | 504 | Open in IMG/M |
| Ga0256614_1023662 | Not Available | 754 | Open in IMG/M |
| Ga0256614_1069377 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1175 | Open in IMG/M |
| Ga0256614_1072326 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 1468 | Open in IMG/M |
| Ga0256614_1079304 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 904 | Open in IMG/M |
| Ga0256614_1079771 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 799 | Open in IMG/M |
| Ga0256614_1083915 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 545 | Open in IMG/M |
| Ga0256614_1128903 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Kouleothrix → Kouleothrix aurantiaca | 747 | Open in IMG/M |
| Ga0256614_1146387 | All Organisms → cellular organisms → Bacteria | 3843 | Open in IMG/M |
| Ga0256614_1153394 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 893 | Open in IMG/M |
| Ga0256614_1155413 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium | 905 | Open in IMG/M |
| Ga0256614_1216776 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin397 | 713 | Open in IMG/M |
| Ga0256614_1226616 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 963 | Open in IMG/M |
| Ga0256614_1238112 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 804 | Open in IMG/M |
| Ga0256614_1291372 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1005 | Open in IMG/M |
| Ga0256614_1333653 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1452 | Open in IMG/M |
| Ga0256614_1370759 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 539 | Open in IMG/M |
| Ga0256614_1403650 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1318 | Open in IMG/M |
| Ga0256614_1422880 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 609 | Open in IMG/M |
| Ga0256614_1469384 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1011 | Open in IMG/M |
| Ga0256614_1470145 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella | 2520 | Open in IMG/M |
| Ga0256614_1544547 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256614_1003286 | Ga0256614_10032862 | F048325 | MEEEPKTELEWNLESAEVAYSVIARYVEHTQISGILIAVLASALGEERVTPIVESGHWQGYMASKREIAEARNDIEKLTALIERMRTPRS |
| Ga0256614_1023662 | Ga0256614_10236621 | F003289 | VXGNITIEANLQTNFNVGFTNMKSDVLIHLTQXQYXXWFXFGLLXSFYYLVILRIVRFRSLKFRPRLATSYRPHGKXGDLIVCIIPVSXCANIISNSNFILRMIEXQSEAGLLTVRIRGKQXYXIYKFELKTFTDILTVPKNIGRNKXQISTPGDLQVAEDYLQILQLRSSNRWVNELXNEISKDTYEAKDVQLVSPQEQLKFNFFKNFEENLNFSELEENNLIPSNLLEDSLENLFPENYN |
| Ga0256614_1069377 | Ga0256614_10693772 | F010005 | PGCNAAGYFYGDTPSGSNWSFNRKEDFSESVAMYCGWARENELSRTAHGRIERYLLPNGTKDPIYGITDNWSDYAAYFYPQNGDYTKTQRWQFIKQLMQDQIQIK |
| Ga0256614_1072326 | Ga0256614_10723264 | F102689 | MGLLDGLILKLVMEVLEAVLSEITKQVNRVRSEVLNEMTKMVSSGFDDFWRGEDADQFKEKILKMAVPKAQDIVGIVGKVGGGIKQASDIIQNADKKATQIVGDIASEFSKI |
| Ga0256614_1079304 | Ga0256614_10793041 | F007648 | MAKELAPDQQIWVMTTEGAGLTGYNRQYLEKLANKNLRLPEDEREIKVRKRGGRFELWLPDLLRYIEEIGYGPHQDKP |
| Ga0256614_1079771 | Ga0256614_10797711 | F077430 | MYYIVEITAQGIETFLEGFEDVGEAWDTVSRLRCEARRQRRNVRYEVR |
| Ga0256614_1083915 | Ga0256614_10839151 | F002525 | VWVGVDNAWEQGKLEARKMLENAAESHTSGARFVGL |
| Ga0256614_1128903 | Ga0256614_11289031 | F071767 | MNEDELIEEISHHDNLLRIHRPFVRPLQLQIAQDDLRAELVRLERAVRDLRARLRRSQRRRGTG |
| Ga0256614_1146387 | Ga0256614_11463872 | F081567 | MRVAIKATEEAIIRLLKAGHPLPGEVVDRELETRLPVFQSVEAVPVKTYGLEGLGRIVVARGRKDVWFVDIKRKDGKLSLKDGESFLDLRDKLQQRYPGQKVTGWLVTTADVDTKAKSAIAEKGCFATAGAAKR |
| Ga0256614_1153394 | Ga0256614_11533941 | F018742 | IAAAKPISIEVAPAGVQSAEKALDDAGLQYSLRRVEDHGGAVQRCVITVPPAIPAKVSFHADYVTGVVTVPLVNVDRFDRVTLEFHSQAIEDAVLDDLLKFILGRDQSFLRRAPLAGLHGIARG |
| Ga0256614_1155413 | Ga0256614_11554132 | F007648 | MAIEIAPEQEIWVMTTEGAEFTGYNRYYLEKLANKMSKLPEAERQIKVRKRLGRHELWLPDLLRYIEEIGYGPHHDKK |
| Ga0256614_1216776 | Ga0256614_12167763 | F002371 | MKLQPKKKKETRGGTRQGSGAKPKYNEGTKTVAFRCPLSKVDELKLVVKSKLFEWLVK |
| Ga0256614_1226616 | Ga0256614_12266161 | F103024 | MRTSRRLTHVALALFALVLMSTAALAADPGLVYPPQSEVSDQKAGSVLVYNFYTSGATSGNAQNTRINITNTSTSSAAFVHLYFVGETCSIADSFICLTATQTASFLASDVDPGISGYIVAVAVDGVNGCPFAFNWLIGDEYVKLTTGHAANLGAEAFSALYAGVLPGCDANSTTATLNFNGLFGGYNLVPAALAGSNVPSRADGNDTIVILNRIGGNLGIGAST |
| Ga0256614_1238112 | Ga0256614_12381122 | F038468 | MPTAKFTHEPGTPEYQASEWLMTIHNASRELDFAISNSPNPAEYVDKLKERVRRDYEQNREQMGWSERTRDIADRSLNVLLETLKLPNM |
| Ga0256614_1291372 | Ga0256614_12913721 | F018391 | TTTIEHEYMLTLLLQVMHAGNMTARHLEWVAGELEEWAAPLRFALEPSSVTSFYVDLASREGVKRRGPSPLEGRVLFLDTRPLHSVLQQNALMLEQKIKGQPLSDRTPRRTEQLGLLTRLASQVDPEFKPFARRGERTAAAGTVDAIVGFGKISAYLREEDTTPIPQLESGKSFGGTMELAVFGRMRNEADRRIELVRRRFAQFAAPGGPWEIKDVSQTGYRLLAPMSAASILTLGTLAAIRGHGDPAWTLGIVRRIRRMTADRAEIGMQVIANTLVGVDLIERGKINEAYSVDGEGTASAGRRFQGLLLSLRTREGKAEVQSLIVPAAEFQPSR |
| Ga0256614_1333653 | Ga0256614_13336533 | F064603 | MTIKKFDYSKSTEDIFYKIIYPIYAKEFLYGNSYENFAFTVSANFILNAPQWEYILEHWEQKESVLTYETK |
| Ga0256614_1370759 | Ga0256614_13707592 | F083833 | GDADVAKAVAPVLAARKARMLGALIKGLETDDDTHARRILELVNALPDAAEILIDAFASPAENVQVNAAIGIGMLGEAKAGTAGRKTLEGARTGGFARTREAVFKALAMLKG |
| Ga0256614_1403650 | Ga0256614_14036501 | F044511 | PDAGDSGEIPSSFLRLIIFPVGRRSAVRPSAGNANR |
| Ga0256614_1422880 | Ga0256614_14228801 | F034611 | LHHFILKLTEPLTPVQQKLLLTFWSHACSTDLPASLLHRCNSILLQTGRQPMETLLMEMEIY |
| Ga0256614_1469384 | Ga0256614_14693841 | F002323 | MFGFLTPGAKEIADPLVSVKTASAWLRQLPPLDVIGRQQHVMGALDAMRQSPRAVDPARAQAVQFLDAALGADRRQLIKQYVENYDAAPRLAERIWQAIYDLSQGFIYTYQTALEASLVAHNNPRWKGIPAVLFARLLHYYGTDAKLRVFRFERWIPRKWVELHRTYLRASELGLDRVPAVLAGAGA |
| Ga0256614_1470145 | Ga0256614_14701452 | F006745 | MRTSAKARRTSSAVVLYVIILVAFQVFLITVAVEAFQTDTESLAWATAAVSVALFAAAAAFLRYLRP |
| Ga0256614_1544547 | Ga0256614_15445471 | F050037 | MNKIKNFFLNDETGLELSEYAVAAALIAVVCVAAFTALSGGIGDA |
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