NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F050037

Metagenome / Metatranscriptome Family F050037

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F050037
Family Type Metagenome / Metatranscriptome
Number of Sequences 146
Average Sequence Length 38 residues
Representative Sequence MIKKFFRDETGLELSEYAVAAALVAIAVVGAFAALGT
Number of Associated Samples 124
Number of Associated Scaffolds 146

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 94.52 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 96.58 %
Associated GOLD sequencing projects 119
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (77.397 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(11.644 % of family members)
Environment Ontology (ENVO) Unclassified
(41.781 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.945 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 52.31%    β-sheet: 0.00%    Coil/Unstructured: 47.69%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 146 Family Scaffolds
PF04964Flp_Fap 26.03
PF02954HTH_8 4.79
PF02163Peptidase_M50 0.68
PF01642MM_CoA_mutase 0.68
PF09720Unstab_antitox 0.68
PF02366PMT 0.68
PF01476LysM 0.68
PF01478Peptidase_A24 0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 146 Family Scaffolds
COG3847Flp pilus assembly protein, pilin FlpExtracellular structures [W] 26.03
COG1884Methylmalonyl-CoA mutase, N-terminal domain/subunitLipid transport and metabolism [I] 0.68


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms77.40 %
UnclassifiedrootN/A22.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2140918013|NODE_1177_length_1057_cov_6.834437All Organisms → cellular organisms → Bacteria1089Open in IMG/M
2162886007|SwRhRL2b_contig_1832240All Organisms → cellular organisms → Bacteria → Proteobacteria989Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_104475331Not Available530Open in IMG/M
3300000953|JGI11615J12901_10609636Not Available564Open in IMG/M
3300000956|JGI10216J12902_100239314All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → Nitratireductor aquibiodomus587Open in IMG/M
3300004156|Ga0062589_101891451All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria602Open in IMG/M
3300004798|Ga0058859_10073028All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria793Open in IMG/M
3300004798|Ga0058859_11791511All Organisms → cellular organisms → Bacteria → Proteobacteria924Open in IMG/M
3300005289|Ga0065704_10879347All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300005293|Ga0065715_11095158All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus521Open in IMG/M
3300005331|Ga0070670_101801673Not Available563Open in IMG/M
3300005343|Ga0070687_100436951All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria867Open in IMG/M
3300005354|Ga0070675_101881870All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300005364|Ga0070673_100187642All Organisms → cellular organisms → Bacteria1774Open in IMG/M
3300005466|Ga0070685_10121460All Organisms → cellular organisms → Bacteria1623Open in IMG/M
3300005518|Ga0070699_102014936All Organisms → cellular organisms → Bacteria → Proteobacteria528Open in IMG/M
3300005546|Ga0070696_100927913All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus723Open in IMG/M
3300005546|Ga0070696_101447138All Organisms → cellular organisms → Bacteria → Proteobacteria587Open in IMG/M
3300005577|Ga0068857_101143861All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium752Open in IMG/M
3300005615|Ga0070702_100365036All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus1022Open in IMG/M
3300005616|Ga0068852_102200431All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus573Open in IMG/M
3300005617|Ga0068859_101726000Not Available691Open in IMG/M
3300005618|Ga0068864_100581075All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1085Open in IMG/M
3300005618|Ga0068864_101458890All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus687Open in IMG/M
3300005618|Ga0068864_102623860All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300005718|Ga0068866_10693606All Organisms → cellular organisms → Bacteria → Proteobacteria698Open in IMG/M
3300005840|Ga0068870_11219476All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas545Open in IMG/M
3300005841|Ga0068863_102310135All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus547Open in IMG/M
3300005876|Ga0075300_1043127Not Available636Open in IMG/M
3300005983|Ga0081540_1275443All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300006031|Ga0066651_10398237All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300006806|Ga0079220_11244565Not Available618Open in IMG/M
3300006852|Ga0075433_11643632All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium554Open in IMG/M
3300006903|Ga0075426_11444156All Organisms → cellular organisms → Bacteria → Proteobacteria523Open in IMG/M
3300007076|Ga0075435_100237390All Organisms → cellular organisms → Bacteria1550Open in IMG/M
3300009088|Ga0099830_10854872Not Available751Open in IMG/M
3300009094|Ga0111539_12388586All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300009098|Ga0105245_11892550All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300009098|Ga0105245_13069507All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300009162|Ga0075423_10436733All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1375Open in IMG/M
3300010118|Ga0127465_1086796All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium694Open in IMG/M
3300010147|Ga0126319_1646591All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium777Open in IMG/M
3300010166|Ga0126306_10484905All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300010166|Ga0126306_11435847Not Available571Open in IMG/M
3300010358|Ga0126370_10312356All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1252Open in IMG/M
3300010360|Ga0126372_11112188All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium809Open in IMG/M
3300010397|Ga0134124_10925723All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria879Open in IMG/M
3300010397|Ga0134124_11936681All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300010399|Ga0134127_10945773Not Available919Open in IMG/M
3300010403|Ga0134123_11667716All Organisms → cellular organisms → Bacteria → Acidobacteria687Open in IMG/M
3300011119|Ga0105246_10148897All Organisms → cellular organisms → Bacteria → Acidobacteria1769Open in IMG/M
3300011119|Ga0105246_12163389Not Available540Open in IMG/M
3300011332|Ga0126317_10766831All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300012187|Ga0136622_10375585All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300012200|Ga0137382_10708217All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium722Open in IMG/M
3300012205|Ga0137362_11375032All Organisms → cellular organisms → Bacteria → Acidobacteria592Open in IMG/M
3300012353|Ga0137367_10846896All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300012358|Ga0137368_10106713All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium2158Open in IMG/M
3300012469|Ga0150984_100213754All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300012678|Ga0136615_10221243Not Available859Open in IMG/M
3300012685|Ga0137397_11100751All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium579Open in IMG/M
3300012929|Ga0137404_11218033All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300012948|Ga0126375_10786669Not Available752Open in IMG/M
3300013102|Ga0157371_10882374Not Available677Open in IMG/M
3300013308|Ga0157375_11671078All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium754Open in IMG/M
3300013308|Ga0157375_12256637All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium649Open in IMG/M
3300014325|Ga0163163_10500592All Organisms → cellular organisms → Bacteria → Acidobacteria1277Open in IMG/M
3300014326|Ga0157380_10891722All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium915Open in IMG/M
3300014487|Ga0182000_10219844All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300014968|Ga0157379_12170020All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium551Open in IMG/M
3300015162|Ga0167653_1000067All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes53040Open in IMG/M
3300015372|Ga0132256_101151811Not Available889Open in IMG/M
3300017695|Ga0180121_10008389All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium3843Open in IMG/M
3300017792|Ga0163161_11491937All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300017792|Ga0163161_12065843Not Available507Open in IMG/M
3300018054|Ga0184621_10123687All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium925Open in IMG/M
3300018071|Ga0184618_10409597All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300018429|Ga0190272_10501026All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1031Open in IMG/M
3300018429|Ga0190272_11984752All Organisms → cellular organisms → Bacteria → Acidobacteria615Open in IMG/M
3300018939|Ga0193593_1003147All Organisms → cellular organisms → Bacteria4249Open in IMG/M
3300019142|Ga0193597_1051236All Organisms → cellular organisms → Bacteria1364Open in IMG/M
3300019244|Ga0180111_1404784All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300019883|Ga0193725_1098768All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium692Open in IMG/M
3300020063|Ga0180118_1077615All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium753Open in IMG/M
3300020067|Ga0180109_1175459All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium788Open in IMG/M
3300020067|Ga0180109_1366439All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300020202|Ga0196964_10247688All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300020215|Ga0196963_10056793All Organisms → cellular organisms → Bacteria1632Open in IMG/M
3300021445|Ga0182009_10742762Not Available534Open in IMG/M
3300021475|Ga0210392_11162156All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300023201|Ga0256614_1544547Not Available510Open in IMG/M
3300025908|Ga0207643_10673020Not Available668Open in IMG/M
3300025910|Ga0207684_11309150Not Available596Open in IMG/M
3300025911|Ga0207654_10822125Not Available672Open in IMG/M
3300025913|Ga0207695_11159276All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria653Open in IMG/M
3300025914|Ga0207671_10987868Not Available664Open in IMG/M
3300025919|Ga0207657_10739103Not Available763Open in IMG/M
3300025942|Ga0207689_11493546Not Available564Open in IMG/M
3300025960|Ga0207651_10289556All Organisms → cellular organisms → Bacteria → Acidobacteria1357Open in IMG/M
3300025981|Ga0207640_11036987All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium723Open in IMG/M
3300025986|Ga0207658_11449629Not Available628Open in IMG/M
3300026088|Ga0207641_10513853Not Available1164Open in IMG/M
3300026089|Ga0207648_11354894All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium669Open in IMG/M
3300026095|Ga0207676_11260469All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium733Open in IMG/M
3300026528|Ga0209378_1299654All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300027787|Ga0209074_10372316All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300028379|Ga0268266_10806740Not Available907Open in IMG/M
3300028380|Ga0268265_10371693All Organisms → cellular organisms → Bacteria → Acidobacteria1312Open in IMG/M
3300028380|Ga0268265_11535802All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300028380|Ga0268265_12005569All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium586Open in IMG/M
3300030988|Ga0308183_1101826All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter pelagius655Open in IMG/M
3300030989|Ga0308196_1019126All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium787Open in IMG/M
3300030990|Ga0308178_1045587All Organisms → cellular organisms → Bacteria → Acidobacteria803Open in IMG/M
3300030990|Ga0308178_1169988All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium512Open in IMG/M
3300031081|Ga0308185_1055807All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium516Open in IMG/M
3300031093|Ga0308197_10224660All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium652Open in IMG/M
3300031095|Ga0308184_1020955All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300031096|Ga0308193_1088819All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium516Open in IMG/M
3300031099|Ga0308181_1188201All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300031114|Ga0308187_10146776Not Available783Open in IMG/M
3300031231|Ga0170824_113604524Not Available560Open in IMG/M
3300031423|Ga0308177_1030538All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium518Open in IMG/M
3300031538|Ga0310888_10919694Not Available547Open in IMG/M
3300031720|Ga0307469_11817319All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium589Open in IMG/M
3300031908|Ga0310900_10525066All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium924Open in IMG/M
3300032205|Ga0307472_101487483All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300034137|Ga0334943_101071All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300034138|Ga0334955_094761All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300034174|Ga0334932_068335Not Available613Open in IMG/M
3300034178|Ga0364934_0326381All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300034221|Ga0334937_000642All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes6904Open in IMG/M
3300034479|Ga0314785_021906Not Available527Open in IMG/M
3300034659|Ga0314780_060405All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium783Open in IMG/M
3300034659|Ga0314780_073995All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter pelagius731Open in IMG/M
3300034659|Ga0314780_083437All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium702Open in IMG/M
3300034659|Ga0314780_122006All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter pelagius616Open in IMG/M
3300034662|Ga0314783_094101All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter pelagius630Open in IMG/M
3300034662|Ga0314783_106475All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300034663|Ga0314784_062559All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter pelagius707Open in IMG/M
3300034663|Ga0314784_169277All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300034665|Ga0314787_045352All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300034665|Ga0314787_077373Not Available587Open in IMG/M
3300034670|Ga0314795_020277All Organisms → cellular organisms → Bacteria → Acidobacteria1002Open in IMG/M
3300034670|Ga0314795_138102Not Available519Open in IMG/M
3300034675|Ga0314800_033196All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium681Open in IMG/M
3300034678|Ga0314803_047932All Organisms → cellular organisms → Bacteria731Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil11.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.85%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.11%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.42%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.42%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.42%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.74%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand2.05%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.05%
BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust2.05%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.05%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.05%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.37%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.37%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.37%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.37%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.37%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.37%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.37%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.37%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.37%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated1.37%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere1.37%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.37%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.37%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.37%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.68%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil0.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.68%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.68%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.68%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.68%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.68%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.68%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.68%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge0.68%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2140918013Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)EnvironmentalOpen in IMG/M
2162886007Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004798Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005876Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401EnvironmentalOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010118Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011332Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012187Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012678Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015162Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017695Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018939Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 9 hrs after wetting v1EnvironmentalOpen in IMG/M
3300019142Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1EnvironmentalOpen in IMG/M
3300019244Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300020063Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020067Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020202Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10EnvironmentalOpen in IMG/M
3300020215Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5EnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300023201Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? PNEngineeredOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300030988Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030989Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030990Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031081Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031095Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031096Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031099Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031423Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034137Biocrust microbial communities from Mojave Desert, California, United States - 39SMCEnvironmentalOpen in IMG/M
3300034138Biocrust microbial communities from Mojave Desert, California, United States - 51SNCEnvironmentalOpen in IMG/M
3300034174Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNSEnvironmentalOpen in IMG/M
3300034178Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17EnvironmentalOpen in IMG/M
3300034221Biocrust microbial communities from Mojave Desert, California, United States - 33SMCEnvironmentalOpen in IMG/M
3300034479Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034659Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034663Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034665Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034670Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034675Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034678Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Iowa-Corn-GraphCirc_004207802140918013SoilMTYFLRDETGLELSEYAVAAALIAMACALAFSTLGGA
SwRhRL2b_0719.000038202162886007Switchgrass RhizosphereMFKKFLKDETGLELSEYAVAAALVAVATVAAFQLLG
INPhiseqgaiiFebDRAFT_10447533123300000364SoilMFRNLLKDESGLELSEYAVAAALVAIATVTAFQLIGANIGARI
JGI11615J12901_1060963623300000953SoilVEKFLRCEKGLELSEYAVAAALVTALTVIAFASLGNVIV
JGI10216J12902_10023931433300000956SoilMIKNFLKDESGLELSEYAVAAALVTLAVIVAFTAVGTN
Ga0062589_10189145113300004156SoilMLKNFLSDETGLELSEYAVAAALIAIAVAGVFTALGDSIS
Ga0058859_1007302833300004798Host-AssociatedMFKKFLKDESGLELSEYAVAAALVALACVVAFQTLGTQIG
Ga0058859_1179151113300004798Host-AssociatedMIRSFLSDESGLELSEYAVAAALVTLAVVVAFTAVGTNIN
Ga0065704_1087934713300005289Switchgrass RhizosphereMRTKITMIKAFLMDEQGLELSEYAVAAALVALATVAAFSALS
Ga0065715_1109515823300005293Miscanthus RhizosphereMFKKFLIDETGLELSEYAVAAALVAVATIAAFQLLGTNIGSRI
Ga0070670_10180167323300005331Switchgrass RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLLGTNIG
Ga0070687_10043695133300005343Switchgrass RhizosphereMIRKFLKDDTGLELSEYAVAAALIALAVVGIFGVLGNNINGVIN
Ga0070675_10188187013300005354Miscanthus RhizosphereMIKKFLRDETGLELSEYAVAAALVAIAVVGAFFTLGGTISDKI
Ga0070673_10018764213300005364Switchgrass RhizosphereMLKNFFSDETGLELSEYAVAAALIAIAVAGVFTALGDSISTKI
Ga0070685_1012146033300005466Switchgrass RhizosphereRKESIMFKKFLKDETGLELSEYAVAAALVAVATVAAFQLLGN*
Ga0070699_10201493613300005518Corn, Switchgrass And Miscanthus RhizosphereLIRGTNVIKTFLQDETGLELSEYAVAAALVTLAVIGAFTSV
Ga0070696_10092791333300005546Corn, Switchgrass And Miscanthus RhizosphereMLKRFFADETGLELSEYAVAAALIALACVVAFQTLGTNIGTKIN
Ga0070696_10144713823300005546Corn, Switchgrass And Miscanthus RhizosphereMTKHFFQDETGLELSEYAVAAALVAMACVAAFTTLGTAIGAK
Ga0068857_10114386123300005577Corn RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLLGTN
Ga0070702_10036503633300005615Corn, Switchgrass And Miscanthus RhizosphereMIKKFFADETGLELSEYAVAAALIALACVVAFQTLGTNIGTKIN
Ga0068852_10220043133300005616Corn RhizosphereMFKRFINDETGLELSEYAVAAALVALAAVLAFQTL
Ga0068859_10172600013300005617Switchgrass RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLLGT
Ga0068864_10058107513300005618Switchgrass RhizosphereMIKKFLKDESGLELSEYAVAAALVALACVAAFQLLG
Ga0068864_10145889013300005618Switchgrass RhizosphereMTYFLRDETGLELSEYAVAAALIAMACALAFSTLGGAIGDR
Ga0068864_10262386023300005618Switchgrass RhizosphereMKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGT
Ga0068866_1069360633300005718Miscanthus RhizosphereMKQFLIDETGLELSEYAVAAALVAIAVVGAFTALGTAIG
Ga0068870_1121947623300005840Miscanthus RhizosphereMIRKFIRDESGLELSEYAVAAALVAIAVVGAFFTLGGTISDK
Ga0068863_10231013513300005841Switchgrass RhizosphereMFKKFLKDESGLELSEYAVAAALVALACVVAFQTLGTQ
Ga0075300_104312723300005876Rice Paddy SoilMIKRFFRDETGLELSEYAVAAALVALAAVAAFQLL
Ga0081540_127544313300005983Tabebuia Heterophylla RhizosphereMIKKFFADETGLELSEYAVAAALVALACVVAFQTLGTNI
Ga0066651_1039823733300006031SoilMIKKFFRDETGLELSEYAVAAALVAIAVVGAFAALGT
Ga0079220_1124456513300006806Agricultural SoilMIKRFFHDETGLELSEYAVAAALVALACVAAFQLL
Ga0075433_1164363213300006852Populus RhizosphereMIKKFFSDETGLELSEYAVAAALVALACVAAFQLLGTNI
Ga0075426_1144415613300006903Populus RhizosphereMITNFLKDETGLELSEYAVAAALIALAVVGIFTTLGN
Ga0075435_10023739043300007076Populus RhizosphereMITKFLKDETGLELSEYAVAAALIALAVVGIFTTL
Ga0099830_1085487233300009088Vadose Zone SoilMFTKFFKDETGLELSEYAVAAALVAVAVVGAFAALGTT
Ga0111539_1238858633300009094Populus RhizosphereMFRKFLKDESGLELSEYAVAAALVALACVVAFQTLG
Ga0105245_1189255023300009098Miscanthus RhizosphereMIKNFFRDETGLELSEYAVAAALVAIAVVGAFFTLGGTIS
Ga0105245_1306950733300009098Miscanthus RhizosphereMIKKFFADETGLELSEYAVAAALVALACVVAFQTLGTNIGT
Ga0075423_1043673353300009162Populus RhizosphereMFKKFLKDESGLELSEYAVAAALVALACVVAFQTLGTQI
Ga0127465_108679633300010118Grasslands SoilMIRKFLSDETGLELSEYAVAAALIALATVGAFQLLGTNI
Ga0126319_164659133300010147SoilMFKTFLSDETGLELSEYAVAAALIAIAVAGVFTALG
Ga0126306_1048490523300010166Serpentine SoilMLKRFFRDETGLELSEYAVAAALVILVAAGAFSALGGSI
Ga0126306_1143584713300010166Serpentine SoilMLKKFFRDETGLELSEYAVAAALIALATVTAFSGLGTTIKNA
Ga0126370_1031235653300010358Tropical Forest SoilMFKRFLSDETGLELSEYAVAAALVALACVAAFQLLGTN
Ga0126372_1111218833300010360Tropical Forest SoilMKEGMKPMFKRFMKDETGLELSEYAVAAALVALAAVL
Ga0134124_1092572313300010397Terrestrial SoilMKKFFLNETGLELSEYAVAAALVAIAVAAAYTALGDAIGVR
Ga0134124_1193668133300010397Terrestrial SoilMIMIKRFFADETGLELSEYAVAAALIALACVVAFQTLGTNIGTKIN
Ga0134127_1094577333300010399Terrestrial SoilMFIEFLRDETGLELSEYAVAAALVTIATVTAFQLVGT
Ga0134123_1166771613300010403Terrestrial SoilMELPMIKKFLKDESGLELSEYAVAAVLIAIAVVGVFGTLGTNI
Ga0105246_1014889743300011119Miscanthus RhizosphereMLKRFFADETGLELSEYAVAAALIALACVVAFQTLGTNIGTKI
Ga0105246_1216338923300011119Miscanthus RhizosphereMFKKFFKDETGLELSEYAVAAALVAIAAVAAFQLLGTN
Ga0126317_1076683133300011332SoilMFWKFLKDETGLELSEYAVAAALVALAAVVAFQTLG
Ga0136622_1037558523300012187Polar Desert SandMIKKFLRDETGLELSEYAVAAALVALAVITAFSTLG
Ga0137382_1070821723300012200Vadose Zone SoilMIRNFFRDETGLELSEYAVAAALVAIAVVGAFSALGTTI
Ga0137362_1137503233300012205Vadose Zone SoilMIKNFLQDETGLELSEYAVAAALIALAVVGVFTTLGKNIGN
Ga0137367_1084689633300012353Vadose Zone SoilMIKNFLRDETGLELSEYAVAAALIAIACVTAFTNL
Ga0137368_1010671313300012358Vadose Zone SoilMQMIKRFFQDETGLELSEYAVAAALIAIAVVAAFTALG
Ga0150984_10021375423300012469Avena Fatua RhizosphereMIKRFLRDETGLELSEYAVAAALVALAAVAAFQLL
Ga0136615_1022124313300012678Polar Desert SandMIKKFLRDETGLELSEYAVAAALVVAAGVAVFTLL
Ga0137397_1110075113300012685Vadose Zone SoilMIKKFFRDETGLELSEYAVAAASVAIAVVGAFTALGTAIS
Ga0137404_1121803333300012929Vadose Zone SoilMIKNFLRDETGLELSEYAVAAPLIATAGVLAFTTLAAPIPRKIK
Ga0126375_1078666933300012948Tropical Forest SoilMKDETGMELSEYAVAAALVTLAVVAAFGTLGRNIN
Ga0157371_1088237413300013102Corn RhizosphereMFKKFLIDETGLELSEYAVAAALVAVATIAAFQLLGTNIGS
Ga0157375_1167107823300013308Miscanthus RhizosphereMIKKFFADETGLELSEYAVAAALVALACVVAFQTLGTNIGTKINE
Ga0157375_1225663723300013308Miscanthus RhizosphereMKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGTAI
Ga0163163_1050059213300014325Switchgrass RhizosphereMLKRFFADETGLELSEYAVAAALIALACVVAFQTL
Ga0157380_1089172223300014326Switchgrass RhizosphereMKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGTAIGD
Ga0182000_1021984413300014487SoilMIKRFFRDETGLELSEYAVAAALVALAAVLAFTALG
Ga0157379_1217002023300014968Switchgrass RhizosphereMIKRFFSDETGLELSEYAVAAALVALAAVVAFQALGTNIGTK
Ga0167653_1000067453300015162Glacier Forefield SoilMISKFFRDETGLELSEYAVAAALVAIAVVGALTALG
Ga0132256_10115181113300015372Arabidopsis RhizosphereMLKRFLNDETGLELSEYAVAAALVALACVAAFQLLG
Ga0180121_1000838913300017695Polar Desert SandMKKFLLDETGLELSEYAVAAALVAIAVVGAFTSLGT
Ga0163161_1149193723300017792Switchgrass RhizosphereMIKSFFRDETGLELSEYAVAAALVALAAVAAFTAL
Ga0163161_1206584333300017792Switchgrass RhizosphereMIKRFLMDEQGLELSEYAVAAALVALATVAAFTML
Ga0184621_1012368713300018054Groundwater SedimentMIRKFFRDETGLELSEYAVAAALVAIAVVGAFGLL
Ga0184618_1040959713300018071Groundwater SedimentMISKFLRDETGLELSEYAVAAALVAIAVVGAFFTLGGSI
Ga0190272_1050102613300018429SoilMFKQFLKDETGLELSEYAVAAALIAVAAAGVFTALG
Ga0190272_1198475233300018429SoilMIRKFFNDETGLELSEYAVAAALIALAVVGIFGTLGNNINGVIGN
Ga0193593_100314763300018939SoilMIKKFLRDETGLELSEYAVAAALVALAVITAFSTLGT
Ga0193597_105123643300019142SoilMIKKFLQDETGLELSEYAVAAALVALAVITAFSTLGKNIGIKIGD
Ga0180111_140478423300019244Groundwater SedimentMIKRFFRDETGLELSEYAVAAALVAIAVVGAFTALGTAIS
Ga0193725_109876813300019883SoilMIRKFFRDETGLELSEYAVAAALVAIAVVVAFTALGTAISSKI
Ga0180118_107761533300020063Groundwater SedimentMIRNFFRDETGLELSEYAVAAALVAIAVVAAFTALG
Ga0180109_117545933300020067Groundwater SedimentMIKNFLRDETGLELSEYAVAAALVAMACALAFTTLGVAIGDKIN
Ga0180109_136643933300020067Groundwater SedimentMTKNFLQDETGLELSEYAVAAALVAMACALAFTTLGVAIGDKINT
Ga0196964_1024768823300020202SoilMIKRFLRDETGLELSEYAVAAALVAIAAVAAFKALG
Ga0196963_1005679333300020215SoilMLKRFFRDETGLELSEYAVAAALVAIATVVAFETLG
Ga0182009_1074276213300021445SoilMFRKFWSDESGLELSEYAVAAALVALACVAAFQLLGT
Ga0210392_1116215633300021475SoilMIIRFLKDEAGLELSEYAAAAALVTLAIVVAISTLGTNIAGKI
Ga0256614_154454713300023201Activated SludgeMNKIKNFFLNDETGLELSEYAVAAALIAVVCVAAFTALSGGIGDA
Ga0207643_1067302013300025908Miscanthus RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLLG
Ga0207684_1130915013300025910Corn, Switchgrass And Miscanthus RhizosphereMIKRFFSDETGLELSEYAVAAALVALAAVAAFQVAVV
Ga0207654_1082212533300025911Corn RhizosphereMFKKFLKDESGLELSEYAVAAALVALACVVAFQTLGTQIGARI
Ga0207695_1115927613300025913Corn RhizosphereMKNFWLDETGLELSEYAVAAALVAIAVVGAFTALGTAIGDK
Ga0207671_1098786833300025914Corn RhizosphereMFKKFLKDETGLELSEYAVAAALVAVATIAAFQLL
Ga0207657_1073910313300025919Corn RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLLGTNIGIKI
Ga0207689_1149354613300025942Miscanthus RhizosphereMIKRFFSDETGLELSEYAVAAALVALAAVAAFQLLGE
Ga0207651_1028955633300025960Switchgrass RhizosphereMIKKFLNDETGLELSEYAVAAALVAMAAVVAFRTL
Ga0207640_1103698713300025981Corn RhizosphereMIKRFFSDETGLELSEYAVAAALIALATVAAFQLLGTN
Ga0207658_1144962933300025986Switchgrass RhizosphereMFRKFLKDESGLELSEYAVAAALIALACVAAFQLL
Ga0207641_1051385333300026088Switchgrass RhizosphereMFKKFLKDETGLELSEYAVAAALVAVATVAAFQLLGTN
Ga0207648_1135489433300026089Miscanthus RhizosphereMKQFLIDETGLELSEYAVAAALVAIAVVGAFTALGT
Ga0207676_1126046913300026095Switchgrass RhizosphereMIKRFFADETGLELSEYAVAAALVALACVVAFQTLGTNIGT
Ga0209378_129965423300026528SoilMIKRFFRDETGLELSEYAVAAALVAIAVVGAFFTLGG
Ga0209074_1037231623300027787Agricultural SoilVFRKFWSDESGLELSEYAVAAALVALACVAAFQLLGG
Ga0268266_1080674043300028379Switchgrass RhizosphereMFKKFLKDETGLELSEYAVAAALVAVATVAAFQLLGT
Ga0268265_1037169313300028380Switchgrass RhizosphereMIKRFFADETGLELSEYAVAAALIALACVAAFQLL
Ga0268265_1153580223300028380Switchgrass RhizosphereMIKRFFRDETGLELSEYAVAAALIAIAVVGAFTAL
Ga0268265_1200556913300028380Switchgrass RhizosphereMIKKFFRDETGLELSEYAVAAALVAIAVVGAFTALGTA
Ga0308183_110182623300030988SoilVIRLFIRDETGLELSEYAVAAALVTLAVIGVFTALGGKI
Ga0308196_101912633300030989SoilMKKFFIDETGLELSEYAVAAALVAIAVVGAFTALGTA
Ga0308178_104558733300030990SoilMINKFLHDETGLELSEYAVAAALVAIAVAGVFMALGDAITTRIS
Ga0308178_116998823300030990SoilMIRNFFRDETGLELSEYAVAAALVAMAVVAAFSALGTAIS
Ga0308185_105580723300031081SoilMIKNFFRDETGLELSEYAVAAALVAIAVVGAFTALGGAI
Ga0308197_1022466033300031093SoilMFREFWKDETGLELSEYAVAAALVALACVVAFQTLGT
Ga0308184_102095533300031095SoilMISKFLRDETGLELSEYAVAAALVAIAVVGAFFTL
Ga0308193_108881923300031096SoilMISKFFRDETGLELSEYAVAAALVAIAVVGAFSALDETGLELS
Ga0308181_118820113300031099SoilMIKRFFRDETGLELSEYAVAAALVAIAVVGAFFTLG
Ga0308187_1014677623300031114SoilMIKNFMIDETGLELSEYAVAAALIALAVVGVFTTLGN
Ga0170824_11360452423300031231Forest SoilMIKNFLQDESGLELSEYAVAAALIALAVVGVFGLLGTSIKT
Ga0308177_103053823300031423SoilMIKNFFRDETGLELSEYAVAAALVAIAVVGAFTALGTAIS
Ga0310888_1091969423300031538SoilMIRNFFRDETGLELSEYAVAAALVAIAAVVAFTTLG
Ga0307469_1181731933300031720Hardwood Forest SoilMIRTFLSDDTGLELSEYAVAAALIAVATVAAFQLLGTS
Ga0310900_1052506613300031908SoilMFRKFLTDETGLELSEYAVAAALVALACVVAYQTLGTNIGARIE
Ga0307472_10148748313300032205Hardwood Forest SoilMIKRFFRDETGLELSEYAVAAALIALACVAAFQLLGT
Ga0334943_101071_444_5543300034137BiocrustMLKRFFRDETGLELSEYAVAAALVILVAAGAFSALGG
Ga0334955_094761_2_1093300034138BiocrustMIKKFLRDETGLELSEYAVAAALVALAVITAFTTLG
Ga0334932_068335_2_1243300034174Sub-Biocrust SoilMLKKFFRDETGLELSEYAVAAALVALATVTAFTSLGTTIKA
Ga0364934_0326381_1_1113300034178SedimentMSSRFLRDETGLELSEYAVAAALVAITVVVAFTYLGE
Ga0334937_000642_2_1183300034221BiocrustMLKKFFRDETGLELSEYAVAAALIALATVTAFSGLGTTS
Ga0314785_021906_3_1073300034479SoilMIRNFFRDETGLELSEYAVAAALVAIAAVIAFTTL
Ga0314780_060405_662_7813300034659SoilMRKFLLDETGLELSEYAVAAALVAIGAVGAFTALGNAIVL
Ga0314780_073995_2_1213300034659SoilMFKKFLIDETGLELSEYAVAAALVAVATIAAFQLLGTNIG
Ga0314780_083437_587_7003300034659SoilMIRKFFSDETGLELSEYAVAAAMIALATVAAFQLLGTS
Ga0314780_122006_1_1083300034659SoilMIKNFLQDETGLELSEYAVAAALIALAVVGVFATLG
Ga0314783_094101_510_6293300034662SoilMFKTFWKDETGLELSEYAVAAALVAIAAVLAFQTLGTNIG
Ga0314783_106475_2_1213300034662SoilMIKSFFSDESGLELSEYAVAAALVTLAVMVAFTAVGTNIN
Ga0314784_062559_598_7053300034663SoilMFKKFLIDETGLELSEYAVAAALVAVATIAAFQLLG
Ga0314784_169277_396_5063300034663SoilMFTRFLKDETGLELSEYAVAAALIALACVVAFQTLGT
Ga0314787_045352_3_1133300034665SoilMFKRFFRAEEGLELSEYAVAAALVVAGVVVAFTVLGN
Ga0314787_077373_477_5873300034665SoilMFTKFLKDESGLELSEYAVAAALVALAAVLAFQTLGG
Ga0314795_020277_2_1213300034670SoilMIRSFFSDESGLELSEYAVAAALVTLAVVVAFTAVGTNIN
Ga0314795_138102_410_5173300034670SoilMFRKFLKDESGLELSEYAVAAALIALACVAAFQLLG
Ga0314800_033196_577_6813300034675SoilMFRKFLKDESGLELSEYAVAAALVAIAAVAAFQLL
Ga0314803_047932_610_7293300034678SoilMFTKFFRDETGLELSEYAVAAALVAVATVLAFELLGSSIG


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