 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022550 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0138765 | Ga0212127 |
| Sample Name | Zodletone_combined assembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 684050652 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 39 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 19 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp. | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 2 |
| All Organisms → cellular organisms → Archaea | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp. | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oklahoma, Zodletone Spring | |||||||
| Coordinates | Lat. (o) | 34.9956 | Long. (o) | -98.6889 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017852 | Metagenome / Metatranscriptome | 238 | Y |
| F018530 | Metagenome / Metatranscriptome | 234 | Y |
| F020727 | Metagenome / Metatranscriptome | 222 | Y |
| F024682 | Metagenome / Metatranscriptome | 205 | Y |
| F025653 | Metagenome / Metatranscriptome | 200 | Y |
| F029147 | Metagenome / Metatranscriptome | 189 | Y |
| F030484 | Metagenome / Metatranscriptome | 185 | Y |
| F037787 | Metagenome | 167 | Y |
| F038920 | Metagenome / Metatranscriptome | 165 | Y |
| F043801 | Metagenome / Metatranscriptome | 155 | Y |
| F046145 | Metagenome | 151 | Y |
| F047154 | Metagenome | 150 | Y |
| F047754 | Metagenome / Metatranscriptome | 149 | Y |
| F049073 | Metagenome / Metatranscriptome | 147 | Y |
| F058721 | Metagenome / Metatranscriptome | 134 | Y |
| F060099 | Metagenome | 133 | Y |
| F062884 | Metagenome / Metatranscriptome | 130 | Y |
| F063816 | Metagenome | 129 | Y |
| F066901 | Metagenome | 126 | Y |
| F070129 | Metagenome | 123 | N |
| F071370 | Metagenome | 122 | Y |
| F074887 | Metagenome | 119 | Y |
| F076229 | Metagenome | 118 | N |
| F082709 | Metagenome / Metatranscriptome | 113 | Y |
| F091056 | Metagenome / Metatranscriptome | 108 | Y |
| F092080 | Metagenome | 107 | Y |
| F098287 | Metagenome | 104 | Y |
| F098292 | Metagenome / Metatranscriptome | 104 | N |
| F102144 | Metagenome | 102 | Y |
| F105450 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0212127_10006458 | Not Available | 3082 | Open in IMG/M |
| Ga0212127_10011633 | All Organisms → cellular organisms → Bacteria | 2295 | Open in IMG/M |
| Ga0212127_10013657 | All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp. | 2117 | Open in IMG/M |
| Ga0212127_10014947 | Not Available | 2029 | Open in IMG/M |
| Ga0212127_10020028 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1759 | Open in IMG/M |
| Ga0212127_10028798 | All Organisms → cellular organisms → Archaea | 1476 | Open in IMG/M |
| Ga0212127_10029078 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1469 | Open in IMG/M |
| Ga0212127_10029601 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp. | 1457 | Open in IMG/M |
| Ga0212127_10039300 | Not Available | 1274 | Open in IMG/M |
| Ga0212127_10042283 | Not Available | 1232 | Open in IMG/M |
| Ga0212127_10052596 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp. | 1111 | Open in IMG/M |
| Ga0212127_10052925 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1108 | Open in IMG/M |
| Ga0212127_10061642 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1031 | Open in IMG/M |
| Ga0212127_10061693 | All Organisms → cellular organisms → Archaea | 1031 | Open in IMG/M |
| Ga0212127_10063497 | Not Available | 1017 | Open in IMG/M |
| Ga0212127_10087756 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 875 | Open in IMG/M |
| Ga0212127_10087937 | Not Available | 874 | Open in IMG/M |
| Ga0212127_10100760 | Not Available | 822 | Open in IMG/M |
| Ga0212127_10113658 | Not Available | 778 | Open in IMG/M |
| Ga0212127_10123335 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp. | 749 | Open in IMG/M |
| Ga0212127_10148704 | Not Available | 688 | Open in IMG/M |
| Ga0212127_10150226 | Not Available | 684 | Open in IMG/M |
| Ga0212127_10153430 | Not Available | 678 | Open in IMG/M |
| Ga0212127_10154712 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 675 | Open in IMG/M |
| Ga0212127_10154973 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 675 | Open in IMG/M |
| Ga0212127_10174392 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 640 | Open in IMG/M |
| Ga0212127_10179664 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon | 631 | Open in IMG/M |
| Ga0212127_10180544 | Not Available | 630 | Open in IMG/M |
| Ga0212127_10180599 | Not Available | 630 | Open in IMG/M |
| Ga0212127_10197482 | Not Available | 605 | Open in IMG/M |
| Ga0212127_10198161 | Not Available | 604 | Open in IMG/M |
| Ga0212127_10203999 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 597 | Open in IMG/M |
| Ga0212127_10214954 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 583 | Open in IMG/M |
| Ga0212127_10257047 | Not Available | 539 | Open in IMG/M |
| Ga0212127_10268428 | Not Available | 529 | Open in IMG/M |
| Ga0212127_10285428 | Not Available | 515 | Open in IMG/M |
| Ga0212127_10294778 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0212127_10002481 | Ga0212127_100024814 | F091056 | MFIIVLAAAALLAIPVAASANGSAVDQFSAVKYIRNLSDLACQYRDHGLSLQLDGYNYEWLIFQDSCIRDNIEAELIILGRSREHIIDPLAWQLHVDMLGATIEQINTISDELLTYNFYPNQDRIVQKIQRKANEGSGVLGDIEDELGRGEERNYADLATYGETLWLIGNDLICLVKDLDFENWTALYSGDLCAGDCGQNSFEVQTACWECGSESCNGCPEVGCATVQGKECETKRCAPTNKCKGKGCKQNTCGHCR |
| Ga0212127_10006458 | Ga0212127_100064583 | F074887 | MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR |
| Ga0212127_10011633 | Ga0212127_100116333 | F105450 | VSLEDRFKKFASEQEAPVGQRHGGYEKNLEYLNKVDSMVSGILETFCQAVGWGLKRNDCCDRDKGAVSCNYILEHRDFWREGFVAVDVEVTWGTYSDPLEAVTVYHGEVGGTGDHVRVYSSRIVIPFDKLTEERLAAALEQQSGNVIRRISYLQKPQ |
| Ga0212127_10013657 | Ga0212127_100136572 | F043801 | MTKKLTGICPCGFSFTTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRAEAMEHIKEVE |
| Ga0212127_10014947 | Ga0212127_100149476 | F030484 | MVDKKEEAVDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEEDLETSN |
| Ga0212127_10020028 | Ga0212127_100200282 | F037787 | MKIYSDDPNLPYKTTKLKALYTKSEIDGLFAKWGVKDVYWHWDPEHNDIFVQFKIAEEIDGVLLQVSAKVEAPSIWDHRTRSKAEGVNWDNSMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGAKVLKDILIPRMNQIQQLAALPQKPVEKVIDVE |
| Ga0212127_10028798 | Ga0212127_100287981 | F038920 | SRSCTCRRSNTNCLELLTVLTEILTDQQLIDLYTTDGYLVAVDYTKNEIKLHTVDCMLADPISSIGVKPTKSRENNTGEFWFSKNKDEANKKAEQIAKTKGYTYIICPICNR |
| Ga0212127_10029078 | Ga0212127_100290782 | F018530 | VAVLEGIPGVSDTTKHFVQAVRLYMRDFPELNRLIAGEETSDRQIAWSVLDALSDFNSTPHFTNLTLEQLFQRNMQWLMLRLTVIAVIESVGLLQTRNHINYSTGGINVGINDKTPMLMNWLQYFRGITEQRKQQIKVALNIESILGPSNVGIHSEYWAVNATYLSY |
| Ga0212127_10029601 | Ga0212127_100296011 | F037787 | KSEIDGLFARWGVRDVYWHWDPDHNDVFVKFKIVEEIEGVPVDIAAKVEAPVIWNHKTRSKVESVNWNISMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASRDGEKTLKDVIIPRLNELQRLEGLEYKVLEKDKVIDVGSKEAREV |
| Ga0212127_10039300 | Ga0212127_100393002 | F025653 | MKYFESKLKTMCLAELKDYRKRLDESIKQKIDQTAPNEQIAPLILYRGIVEHEMTTRMNKMKNQ |
| Ga0212127_10042283 | Ga0212127_100422832 | F098292 | MSDAIRRIERWQKKYSPERTKATLELLQEEMRQRYAAVTTEMTAMELQVKEVLNQMGVHTTNYVPYLSYARQLWKLGRQQNISGESFAMASEVLLQKWAGRGQDPDVLAAIRTKVFNSPPPKP |
| Ga0212127_10052596 | Ga0212127_100525962 | F049073 | MNDQIRETIRFVLEDDNEGMRTALGPGSDLDPENKQMNRELIKKQEQILVKLDNDEALSQDDLVLIRDANEIHVNDTLDLNGHYKEGLALEEWLANMIELDRETAMKILEQWLDRDSHTPGRVYRALHTLWEEATPDGAVSRPAFDDEGRCLKCGSKVSFADVTDTVVFVGEEIVKRHPGDITNRNCVRCTYPKQYPDYK |
| Ga0212127_10052925 | Ga0212127_100529251 | F070129 | MQYSATTEALLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS |
| Ga0212127_10061642 | Ga0212127_100616422 | F024682 | VNAEDELISKLKSEIGKTLPAMFAGMAENMLENNKDVIIAWLKDNKDLVKEVIES |
| Ga0212127_10061693 | Ga0212127_100616932 | F043801 | MAKKLTGICPCGFSFTTPHGEDDAVAVMRYHVKLLHEKEYPNGQTRAEVMEHIKEVE |
| Ga0212127_10063497 | Ga0212127_100634972 | F070129 | MQYSATTEALLQAIKQDVKHRVDEIVDEAEHAAMTLESERHVDQVLEQALALVEQALAEAAHAMAREIHRERAR |
| Ga0212127_10087756 | Ga0212127_100877561 | F047154 | MPYECEEARLSAGEIAEIYRNMKARGLSYIFCQACSEEMKPEQARKSATGLILCRPCHMCNDTDATQEEIDQAIDEDFSGYLACFNQS |
| Ga0212127_10087937 | Ga0212127_100879372 | F071370 | MEGLSNKAQAALVGVSSGLIAFGTAAAAVPDFIPAEVKVPIAVTAWLAGVIGFSLKEALGGKGA |
| Ga0212127_10100760 | Ga0212127_101007602 | F024682 | LSAEDELISKLQIEIGKKVPAMFNRMAKNMLANNKEVIINWLKDNKELVKEVIES |
| Ga0212127_10113658 | Ga0212127_101136582 | F058721 | MLFMLRENLPCADPHCKHQMRLVFQNERFIGYRCLMKPNSHNFRYDIENKKWEKLIIKTKPLLKYKEAPYEEEIDEPIAAEPI |
| Ga0212127_10123335 | Ga0212127_101233351 | F037787 | LFAKWGVKDVYWRWDPDRNDVFVQFKITEEIDGVPLQVSAKVEAPVIWNHKTRSKAEAVNWNISMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGEKTLKDVIIPRINELQRLDALESRVLEKKRKVIDVNGNEVEG |
| Ga0212127_10131213 | Ga0212127_101312132 | F029147 | MGRIVDLCGEIAAVADEGPEGLLLPPDAWERLRETWSDDDIEDA |
| Ga0212127_10148704 | Ga0212127_101487041 | F070129 | MQYSATTEALLQAIKHDVRERVDQIVDEAEHAAMTLESEQHVDQVLEQALLLVEEALAEAAHAMAREIHRERAS |
| Ga0212127_10150226 | Ga0212127_101502262 | F020727 | MQKYLVLVKTIPGKGKEFWEDFSKMPDKPREGVMIESSWSLYGYWDFVIFFKADSNENSLHFVGENLRAIRGISDTSTSPMTILKEHIKM |
| Ga0212127_10153430 | Ga0212127_101534301 | F105450 | VTLEDRFKSFASEQKAPPDQQHDPYKRDVESMNKVDSIVSKVLEAFCHAVGWGLKRSDYCDRDKGAVSCNYILEHRDFCREGYLTVDVEVTRGYRSDPVEAVTLYQGAIMGATEHARDFASKVVIPFSQLREEGLATALEQQSRNLIRRIIRLEKPKPPISVERE |
| Ga0212127_10154712 | Ga0212127_101547121 | F076229 | MMKREESAYVAFGQYWLQARQQETIRLWMTNSICVVFAALLAVIVWRGLAYWYIAAFGFSLALFGFFMNHTLRVLMIRYSRVAGALMDSELELGDYRRFVEGGDKKGVRGAWDTVWTVHIAFVLLYAFAIGGWAALLAMTQGTIDWLVIFTFASLTFCSILFYRVFLWPRE |
| Ga0212127_10154973 | Ga0212127_101549731 | F060099 | MGLSDDQRDEAMKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV |
| Ga0212127_10174392 | Ga0212127_101743921 | F082709 | VNNIPMCADAEGNNGDQRFNGIAYNSKRNEFLASWTDSREGMHNVGIVGRIVKADGTMPAKDFILVDAPGAQMISHSAYLPQQDKYFMAFEYSRNELDKFYFKDINARLDIGARWLGANGQPEGDLIDICSSEGNQRFVRFAHNAAGDTFLLVWQDDFPGVSDSVEGHIMSAGGTIMGALYKK |
| Ga0212127_10179664 | Ga0212127_101796642 | F017852 | KRFISLSYTIPVESEIMPTFLIISRHSPENCPMNNEKMKRMTLELPDKLGGLEKKHGIKRVGVWTVIPEHLLVWVYEAPSSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESIQLLK |
| Ga0212127_10180544 | Ga0212127_101805441 | F066901 | MKHPCEAQVAWQICKLLSDLDVLLWQLYWDEFEALYEKEEAEKYWGETIHTIQDACQT |
| Ga0212127_10180599 | Ga0212127_101805991 | F062884 | MERDGREVDALSIFLMGLGVLLLVLGPCAGLYGIAMGFVALVGCWVVAITLRVFYFGGSRDDRRSRYV |
| Ga0212127_10197482 | Ga0212127_101974821 | F043801 | MAKKLSGVCPCGFSFVTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRDEAMEHIKEVE |
| Ga0212127_10198161 | Ga0212127_101981611 | F092080 | MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMVNLIESLQAGPGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRS |
| Ga0212127_10203999 | Ga0212127_102039991 | F063816 | MESVELKLREIDNGQFPVVLTKKIVEILREPEMSIEVKAGQITEDVSRLLDSLGYVITAKKPMDGWMRLQAVKQKTQ |
| Ga0212127_10214954 | Ga0212127_102149541 | F098287 | FIAFNPPGRKHISLATRYSEDVGVVTDLLKKYRPEIVITHTLGGEKLDHEGTAYMVYLAFKRAIQDEVPVGRLWMTVNGWLLEREAMESGRGKPDVSIDVSDYLAVKYRALDQHRSQNGGFGRDYIVINKGKVNEDIEEFITVVDNTK |
| Ga0212127_10257047 | Ga0212127_102570471 | F102144 | MVSLKEVWSPSRIRAEANNIEDHLLNTTQRLLRLERQYRQKKMEYLARIEAYEERLKWVTAEMQ |
| Ga0212127_10268428 | Ga0212127_102684281 | F047754 | YRRRGDMKRIFCVLVAISCIFVFASCSLINSGSPTTNSETVPSNYPDSVVYKIELSNETYLCSSFDVSNTDAEISLRLNEVYSVSSDGKITWIGKEKNISAVKIEKIVK |
| Ga0212127_10285428 | Ga0212127_102854282 | F046145 | QVCLNFYWKLFEWITARYEKTIPDWLECNHMVLKPKPFPEASTGFFITNRYLRVLSEKI |
| Ga0212127_10294778 | Ga0212127_102947781 | F066901 | MKHPCEAQVAWQSCKLLSELDVLLWEFYWGEFEALYEKEEAEEYWGETQTSLHHHSH |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |