NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F060099

Metagenome Family F060099

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F060099
Family Type Metagenome
Number of Sequences 133
Average Sequence Length 58 residues
Representative Sequence MGLSDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI
Number of Associated Samples 109
Number of Associated Scaffolds 133

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 85.71 %
% of genes near scaffold ends (potentially truncated) 24.06 %
% of genes from short scaffolds (< 2000 bps) 78.95 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (83.459 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil
(12.782 % of family members)
Environment Ontology (ENVO) Unclassified
(28.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(24.812 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.02%    β-sheet: 0.00%    Coil/Unstructured: 45.98%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.80
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.266.1.0: automated matchesd2nw8a_2nw80.80257
a.2.5.1: Prefoldind1fxkc_1fxk0.79646
e.32.1.1: Phase 1 flagellind1io1a_1io10.79622
f.5.1.0: automated matchesd3pika_3pik0.79359
a.118.8.0: automated matchesd5mjza_5mjz0.78802


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 133 Family Scaffolds
PF01128IspD 18.05
PF00005ABC_tran 6.02
PF02542YgbB 3.76
PF13860FlgD_ig 3.01
PF02470MlaD 2.26
PF00588SpoU_methylase 2.26
PF00160Pro_isomerase 1.50
PF02687FtsX 1.50
PF01569PAP2 1.50
PF01384PHO4 1.50
PF04909Amidohydro_2 0.75
PF027395_3_exonuc_N 0.75
PF00593TonB_dep_Rec 0.75
PF02797Chal_sti_synt_C 0.75
PF00069Pkinase 0.75
PF00487FA_desaturase 0.75
PF07690MFS_1 0.75
PF09360zf-CDGSH 0.75
PF09471Peptidase_M64 0.75
PF01875Memo 0.75
PF01433Peptidase_M1 0.75
PF01865PhoU_div 0.75
PF012572Fe-2S_thioredx 0.75
PF14256YwiC 0.75
PF01272GreA_GreB 0.75
PF00654Voltage_CLC 0.75
PF03796DnaB_C 0.75
PF13189Cytidylate_kin2 0.75
PF16884ADH_N_2 0.75
PF02463SMC_N 0.75
PF12770CHAT 0.75
PF02469Fasciclin 0.75
PF16576HlyD_D23 0.75
PF00534Glycos_transf_1 0.75
PF01564Spermine_synth 0.75
PF13561adh_short_C2 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 133 Family Scaffolds
COG2068CTP:molybdopterin cytidylyltransferase MocACoenzyme transport and metabolism [H] 18.05
COG12112-C-methyl-D-erythritol 4-phosphate cytidylyltransferaseLipid transport and metabolism [I] 18.05
COG1207Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferaseCell wall/membrane/envelope biogenesis [M] 18.05
COG0746Molybdopterin-guanine dinucleotide biosynthesis protein ACoenzyme transport and metabolism [H] 18.05
COG02452C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseLipid transport and metabolism [I] 3.76
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.01
COG0219tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domainTranslation, ribosomal structure and biogenesis [J] 2.26
COG0566tRNA G18 (ribose-2'-O)-methylase SpoUTranslation, ribosomal structure and biogenesis [J] 2.26
COG0565tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferaseTranslation, ribosomal structure and biogenesis [J] 2.26
COG0652Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin familyPosttranslational modification, protein turnover, chaperones [O] 1.50
COG0306Phosphate/sulfate permeaseInorganic ion transport and metabolism [P] 1.50
COG0308Aminopeptidase N, contains DUF3458 domainAmino acid transport and metabolism [E] 0.75
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 0.75
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 0.75
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 0.75
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 0.75
COG1355Predicted class III extradiol dioxygenase, MEMO1 familyGeneral function prediction only [R] 0.75
COG1392Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 familyInorganic ion transport and metabolism [P] 0.75
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 0.75
COG1905NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)Energy production and conversion [C] 0.75
COG0038H+/Cl- antiporter ClcAInorganic ion transport and metabolism [P] 0.75
COG2335Uncaracterized surface protein containing fasciclin (FAS1) repeatsGeneral function prediction only [R] 0.75
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 0.75


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.46 %
UnclassifiedrootN/A16.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_13067135All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0770429All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300003994|Ga0055435_10256358Not Available516Open in IMG/M
3300004000|Ga0055458_10100771All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium796Open in IMG/M
3300004013|Ga0055465_10029030All Organisms → cellular organisms → Bacteria1349Open in IMG/M
3300004020|Ga0055440_10210458All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300004027|Ga0055459_10251080All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300004057|Ga0055496_10154995Not Available578Open in IMG/M
3300004074|Ga0055518_10191954All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300004077|Ga0055523_10137167All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300004114|Ga0062593_103445065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium508Open in IMG/M
3300004150|Ga0055520_10203857All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300004463|Ga0063356_103167172All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium709Open in IMG/M
3300004480|Ga0062592_100011659All Organisms → cellular organisms → Bacteria → Proteobacteria3570Open in IMG/M
3300004480|Ga0062592_101932749All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300005206|Ga0068995_10031588All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium882Open in IMG/M
3300005288|Ga0065714_10120262All Organisms → cellular organisms → Bacteria1356Open in IMG/M
3300005295|Ga0065707_10162441All Organisms → cellular organisms → Bacteria1551Open in IMG/M
3300005340|Ga0070689_100246437All Organisms → cellular organisms → Bacteria1473Open in IMG/M
3300005354|Ga0070675_100022087All Organisms → cellular organisms → Bacteria5084Open in IMG/M
3300005590|Ga0070727_10615256All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium608Open in IMG/M
3300005618|Ga0068864_100720623All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300005825|Ga0074476_1154411All Organisms → cellular organisms → Bacteria1198Open in IMG/M
3300005836|Ga0074470_11765019All Organisms → cellular organisms → Bacteria4845Open in IMG/M
3300006224|Ga0079037_100089276Not Available2556Open in IMG/M
3300006224|Ga0079037_100255813All Organisms → cellular organisms → Bacteria1604Open in IMG/M
3300006914|Ga0075436_100143734All Organisms → cellular organisms → Bacteria1677Open in IMG/M
3300007004|Ga0079218_11053237All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300007788|Ga0099795_10528031All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300009153|Ga0105094_10546827All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium675Open in IMG/M
3300009156|Ga0111538_12584981Not Available637Open in IMG/M
3300009157|Ga0105092_10000708All Organisms → cellular organisms → Bacteria17543Open in IMG/M
3300009157|Ga0105092_10111738All Organisms → cellular organisms → Bacteria → Proteobacteria1504Open in IMG/M
3300009506|Ga0118657_10002587All Organisms → cellular organisms → Bacteria → Proteobacteria30109Open in IMG/M
3300009506|Ga0118657_10053683All Organisms → cellular organisms → Bacteria6159Open in IMG/M
3300009506|Ga0118657_10219785All Organisms → cellular organisms → Bacteria2625Open in IMG/M
3300009506|Ga0118657_11494320All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium798Open in IMG/M
3300009597|Ga0105259_1136038All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium594Open in IMG/M
3300009609|Ga0105347_1010316All Organisms → cellular organisms → Bacteria3219Open in IMG/M
3300009609|Ga0105347_1197020Not Available808Open in IMG/M
3300009610|Ga0105340_1155403All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium946Open in IMG/M
3300009678|Ga0105252_10035107All Organisms → cellular organisms → Bacteria1851Open in IMG/M
3300009870|Ga0131092_10000089All Organisms → cellular organisms → Bacteria185729Open in IMG/M
3300009873|Ga0131077_10121799All Organisms → cellular organisms → Bacteria3047Open in IMG/M
3300010317|Ga0116197_1099847All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria708Open in IMG/M
3300010392|Ga0118731_104801881All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1383Open in IMG/M
3300010392|Ga0118731_106401167Not Available723Open in IMG/M
3300010392|Ga0118731_108245840All Organisms → cellular organisms → Bacteria2957Open in IMG/M
3300010392|Ga0118731_109360853All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria13418Open in IMG/M
3300010392|Ga0118731_112118199All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium1361Open in IMG/M
3300010392|Ga0118731_113594062All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1962Open in IMG/M
3300010392|Ga0118731_114898197All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300010430|Ga0118733_100136551All Organisms → cellular organisms → Bacteria4903Open in IMG/M
3300010430|Ga0118733_101312247All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium1444Open in IMG/M
3300010430|Ga0118733_103717546All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium824Open in IMG/M
3300010430|Ga0118733_106121996All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium630Open in IMG/M
3300010430|Ga0118733_106574082Not Available606Open in IMG/M
3300010430|Ga0118733_107132641All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium581Open in IMG/M
3300011413|Ga0137333_1005691All Organisms → cellular organisms → Bacteria2744Open in IMG/M
3300011423|Ga0137436_1014752All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans1923Open in IMG/M
3300011429|Ga0137455_1009984All Organisms → cellular organisms → Bacteria2547Open in IMG/M
3300011429|Ga0137455_1015269All Organisms → cellular organisms → Bacteria2072Open in IMG/M
3300011435|Ga0137426_1054566All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1055Open in IMG/M
3300011439|Ga0137432_1152807All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300012143|Ga0137354_1052343All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium652Open in IMG/M
3300012160|Ga0137349_1079719Not Available602Open in IMG/M
3300012898|Ga0157293_10257278Not Available556Open in IMG/M
3300012912|Ga0157306_10336160All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium568Open in IMG/M
3300013101|Ga0164313_10071620All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2916Open in IMG/M
3300013308|Ga0157375_10583726All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1278Open in IMG/M
3300014306|Ga0075346_1136752All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300014865|Ga0180078_1002551All Organisms → cellular organisms → Bacteria2194Open in IMG/M
3300014875|Ga0180083_1018715All Organisms → cellular organisms → Bacteria1288Open in IMG/M
3300015077|Ga0173483_10109475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1164Open in IMG/M
3300017939|Ga0187775_10297665All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300017966|Ga0187776_10160080All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium1391Open in IMG/M
3300018059|Ga0184615_10136142All Organisms → cellular organisms → Bacteria1387Open in IMG/M
3300018063|Ga0184637_10172895All Organisms → cellular organisms → Bacteria1330Open in IMG/M
3300018083|Ga0184628_10172546Not Available1128Open in IMG/M
3300018084|Ga0184629_10001115All Organisms → cellular organisms → Bacteria11198Open in IMG/M
3300019362|Ga0173479_10000875All Organisms → cellular organisms → Bacteria6210Open in IMG/M
3300022204|Ga0224496_10056064All Organisms → cellular organisms → Bacteria1782Open in IMG/M
3300022217|Ga0224514_10211411All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division GN15 → candidate division GN15 bacterium694Open in IMG/M
3300022226|Ga0224512_10040746All Organisms → cellular organisms → Bacteria2849Open in IMG/M
3300022550|Ga0212127_10154973All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria675Open in IMG/M
3300022880|Ga0247792_1017074All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1178Open in IMG/M
3300023057|Ga0247797_1040717All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium650Open in IMG/M
3300023263|Ga0247800_1021005All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1062Open in IMG/M
(restricted) 3300024517|Ga0255049_10447174Not Available598Open in IMG/M
(restricted) 3300024520|Ga0255047_10271232All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium860Open in IMG/M
3300025537|Ga0210061_1061875Not Available642Open in IMG/M
3300025551|Ga0210131_1073942Not Available576Open in IMG/M
3300025567|Ga0210076_1010294Not Available2014Open in IMG/M
3300025938|Ga0207704_10994343All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium709Open in IMG/M
3300025970|Ga0210081_1012533All Organisms → cellular organisms → Bacteria1166Open in IMG/M
3300026095|Ga0207676_11906862All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300027513|Ga0208685_1013691All Organisms → cellular organisms → Bacteria1916Open in IMG/M
3300027533|Ga0208185_1117483All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium621Open in IMG/M
3300027722|Ga0209819_10017187Not Available2377Open in IMG/M
3300027722|Ga0209819_10154457Not Available803Open in IMG/M
3300027831|Ga0209797_10096880Not Available1289Open in IMG/M
(restricted) 3300027856|Ga0255054_10518634All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium577Open in IMG/M
3300027885|Ga0209450_10324415All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300027886|Ga0209486_10367755Not Available864Open in IMG/M
3300027900|Ga0209253_10090968All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2506Open in IMG/M
(restricted) 3300028043|Ga0233417_10609592All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes520Open in IMG/M
3300028803|Ga0307281_10014749All Organisms → cellular organisms → Bacteria2201Open in IMG/M
3300031511|Ga0307424_1033832All Organisms → cellular organisms → Bacteria1803Open in IMG/M
3300031538|Ga0310888_10253653All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300031707|Ga0315291_10328593Not Available1486Open in IMG/M
3300031716|Ga0310813_11550010All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300031772|Ga0315288_10247524All Organisms → cellular organisms → Bacteria1899Open in IMG/M
3300031772|Ga0315288_11137397All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium679Open in IMG/M
3300031858|Ga0310892_10234745All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300031892|Ga0310893_10104474All Organisms → cellular organisms → Bacteria1044Open in IMG/M
3300031997|Ga0315278_10154189All Organisms → cellular organisms → Bacteria2349Open in IMG/M
3300032053|Ga0315284_12077565Not Available572Open in IMG/M
3300032144|Ga0315910_10000272All Organisms → cellular organisms → Bacteria56837Open in IMG/M
3300032144|Ga0315910_10519282All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium919Open in IMG/M
3300032157|Ga0315912_11161576All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300032180|Ga0307471_102053075All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300032205|Ga0307472_101126909All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium744Open in IMG/M
3300032231|Ga0316187_10335368Not Available1149Open in IMG/M
3300032342|Ga0315286_11064077All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300032342|Ga0315286_11430399All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium665Open in IMG/M
3300032397|Ga0315287_12173473All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium606Open in IMG/M
3300033414|Ga0316619_11158102All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Catalimonadaceae → Tunicatimonas → unclassified Tunicatimonas → Tunicatimonas sp. TK19036681Open in IMG/M
3300033416|Ga0316622_101463557All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300034115|Ga0364945_0113550All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300034115|Ga0364945_0274033All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300034155|Ga0370498_097539All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria682Open in IMG/M
3300034354|Ga0364943_0270166Not Available638Open in IMG/M
3300034818|Ga0373950_0100227All Organisms → cellular organisms → Bacteria623Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil12.78%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands10.53%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment6.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.77%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine5.26%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment5.26%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.76%
Mangrove SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment3.01%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.01%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.26%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment2.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.26%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.26%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.50%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.50%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment1.50%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.50%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.50%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.50%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.50%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.50%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere1.50%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.50%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.50%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.75%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow0.75%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.75%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.75%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.75%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.75%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.75%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.75%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.75%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.75%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.75%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater0.75%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge0.75%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004000Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2EnvironmentalOpen in IMG/M
3300004013Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2EnvironmentalOpen in IMG/M
3300004020Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2EnvironmentalOpen in IMG/M
3300004027Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D2EnvironmentalOpen in IMG/M
3300004057Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2EnvironmentalOpen in IMG/M
3300004074Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300004077Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004150Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005206Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300005288Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1Host-AssociatedOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005590Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300006224Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaGEnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009506Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8EnvironmentalOpen in IMG/M
3300009597Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300009870Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plantEngineeredOpen in IMG/M
3300009873Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plantEngineeredOpen in IMG/M
3300010317Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011413Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2EnvironmentalOpen in IMG/M
3300011423Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2EnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300011435Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300012143Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT790_2EnvironmentalOpen in IMG/M
3300012160Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014306Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1EnvironmentalOpen in IMG/M
3300014865Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10DEnvironmentalOpen in IMG/M
3300014875Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10DEnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022204Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1EnvironmentalOpen in IMG/M
3300022217Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24EnvironmentalOpen in IMG/M
3300022226Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_13EnvironmentalOpen in IMG/M
3300022550Zodletone_combined assemblyEnvironmentalOpen in IMG/M
3300022880Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025537Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025551Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025567Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025970Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027513Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)EnvironmentalOpen in IMG/M
3300027533Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)EnvironmentalOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027831Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300027856 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23EnvironmentalOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300031511Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-20EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032231Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1EnvironmentalOpen in IMG/M
3300032342Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M
3300034155Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17EnvironmentalOpen in IMG/M
3300034354Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17EnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0613.000028902162886012Miscanthus RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRQRIDEIELYLKRAKMALKFI
ICChiseqgaiiDRAFT_077042923300000033SoilMGLXDDQRDEALKALRGAQEAMEXXMXGVXGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0055435_1025635823300003994Natural And Restored WetlandsMGLSDDQRDEALKALKGAQEAMDYLIRGVKGVDEASTLRGRIDEVELYLKRAKTALKFI*
Ga0055458_1010077123300004000Natural And Restored WetlandsMGLSDDQRDEALKALKGAQEAMEYLIRGVKGVDEASTLRGRIDEVELYLKRAKTA
Ga0055465_1002903023300004013Natural And Restored WetlandsMGLTDDQRDDALKALRGAQEALEYAIRGLKGVDEAATLRDRIDELELYLKRAKMALKFI*
Ga0055440_1021045823300004020Natural And Restored WetlandsMGLTDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI*
Ga0055459_1025108013300004027Natural And Restored WetlandsMGLTDDQRDDALKALRGAEEALEYVVKGVKGTEEAATLRSRIDEVELYLKRAKMALKFI*
Ga0055496_1015499523300004057Natural And Restored WetlandsMGLSDDQRDEALKALKGAQEAMEYLIRGVKGVDEASTLRGRIDEVELYLKRAKTALKFI
Ga0055518_1019195423300004074Natural And Restored WetlandsMGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKFI*
Ga0055523_1013716713300004077Natural And Restored WetlandsMGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKF
Ga0062593_10344506513300004114SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI*
Ga0055520_1020385723300004150Natural And Restored WetlandsEAMKALRGAEEALEYLIKGVKGLEEPPTLAGRIEEVELYLKRVKMALKFI*
Ga0063356_10316717223300004463Arabidopsis Thaliana RhizosphereTMGLSDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI
Ga0062592_10001165933300004480SoilMGLTDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0062592_10193274923300004480SoilMGLSDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0068995_1003158823300005206Natural And Restored WetlandsMGLSDDQRDEALKALRGAQEALEYTVRGLKGVDEAKTLRDRLEEVDLYLKRAKQALKFI*
Ga0065714_1012026223300005288Miscanthus RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRERIDEIELYLKRAKMALKFI*
Ga0065707_1016244123300005295Switchgrass RhizosphereMGLSDDQRDEALKALRGAQETLEYLIKGVRGVDEAGTLRERIDEIELYLKRVKMALKFI*
Ga0070689_10024643733300005340Switchgrass RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRQRIDEIELYLKRAKMALKFI*
Ga0070675_10002208743300005354Miscanthus RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRQRIDEIELYLKRAKTALKFI*
Ga0070727_1061525623300005590Marine SedimentGSNDPKEALHVGLTDDQRDEALKAFRGAEEALEYVIKGVKGLEEAATLRSRIDEVELYLKRAKMALKFM*
Ga0068864_10072062313300005618Switchgrass RhizosphereALRAAQETMDYLIRGVKGVEEAATLRQRIDEIELYLKRAKTALKFI*
Ga0074476_115441123300005825Sediment (Intertidal)MGLSDDQRDEAMKALRGAEEALEYLIKGVKGLEEPPTLAGRIEEVELYLKRVKMALKFI*
Ga0074470_1176501953300005836Sediment (Intertidal)MGLSDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRVRIDEIELYLKRAKMALKFI*
Ga0079037_10008927623300006224Freshwater WetlandsMSLTDDQRDAALKALRGAEDALQYAMSGVKGGEEAATLRNRIEEVESYLVRAKKELKFV*
Ga0079037_10025581323300006224Freshwater WetlandsMALSDDQRDEALKALRGAQEALDYLMRGVKGVEEASTLRGRIDEIELYLKRAKMALKFI*
Ga0075436_10014373423300006914Populus RhizosphereMGLTDDQRDEAAKALRAAQETMDYLIRGVKGVEEASTLRNRIDEIELYLKRAKMALKFI*
Ga0079218_1105323723300007004Agricultural SoilMGLTDDQRDDALKALRGAQDTLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI*
Ga0099795_1052803123300007788Vadose Zone SoilMGLSDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI*
Ga0105094_1054682713300009153Freshwater SedimentLGLSDDQRDDALKALRGAEDVMESLIKGVRGLEEASTLRARIEELEVYIKRVKTALKFV*
Ga0111538_1258498113300009156Populus RhizosphereDQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI*
Ga0105092_1000070873300009157Freshwater SedimentMGLTDDQRDDALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALKFI*
Ga0105092_1011173823300009157Freshwater SedimentMGLSDDQRDEALKALRGAQEAMEYLVKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0118657_1000258773300009506Mangrove SedimentVGLTDDQRDEALKALRGAEEALEYVVKGLKGTEEAPTIQNRIEELELYVKRAKLALKFI*
Ga0118657_1005368333300009506Mangrove SedimentMGLSDDQRDEALKALKGAEEAMEYLIKGVKGLDEAATLRGRIEEVELYLKRAKMALKFI*
Ga0118657_1021978513300009506Mangrove SedimentMSLTDDQRDEALKAFKGAMEALEYAMSGVKGSDEASTLRGRIEEIELYLKRAKMALKFI*
Ga0118657_1149432023300009506Mangrove SedimentMLTDDQRDEALKAIRGAMEEMEYLEKGLRGTAEAATLRGRIEEVELYLKRAKMALKFI*
Ga0105259_113603813300009597SoilDTIHADANGSQEGVFGMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAKSALKFI*
Ga0105347_101031633300009609SoilMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAKSALKFI*
Ga0105347_119702023300009609SoilMGLTDDQRDDALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLK
Ga0105340_115540333300009610SoilHADANGSQEGVCGMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAKSALKFI*
Ga0105252_1003510723300009678SoilMGLSDDQRDEAAKAIRSAQEALEYLYKGVKGLDEASTLRGRIEEVELYLKRAKLALKFI*
Ga0131092_10000089163300009870Activated SludgeMGLTDDQRDEAAKALRAAQDTMDYLIRGVKGVEEAATLRERIDEVELYLKRAKMALKFI*
Ga0131077_1012179943300009873WastewaterMMGLTDDQRDEAAKALRAAQETMDYLIRGVKGVDEAATLRERIDEIELYLKRAKMALKFI
Ga0116197_109984713300010317Hot Spring SedimentMKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV*
Ga0118731_10480188123300010392MarineVGLTDDQRDEALKAFRGAEEALEYVIKGVKGLEEAATLRSRIDEVELYLKRAKMALKFM*
Ga0118731_10640116713300010392MarineMGLSDDQRDEAVRALRGAEEALEYAIKGVKGLDEAATLRGRIEEIELYLKRAKMALKFI*
Ga0118731_10824584023300010392MarineMLTDDQRDEAFKAVKGAEEAMEYLAKGLKGMEEAATLRGRIEEVELYLKRAKMALKFI*
Ga0118731_10936085373300010392MarineMLTDDQRDEALKAVKGAEEAMEYLAKGLKGMEEAATLRGRIEEVELYLKRAKMALKFI*
Ga0118731_11211819933300010392MarineMSLTEDQRDGALKALRGAEEALEYVVSGVRGSEEAATLRSRIEEVEMYLNKAKSELKFM*
Ga0118731_11359406233300010392MarineMLSDDQRDEALKALRSAEETMEYLIKGLKGVEEAATLRDRIDEIELYLKRAKMALKFM*
Ga0118731_11489819723300010392MarineMLTDDMRDEAYKAMRGAEESLEYAMKEVRGTAEASTLRGRIEEIEQYLNKAKMALKFM*
Ga0118733_10013655163300010430Marine SedimentLKAFRGAEEALEYVIKGVKGLEEAATLRSRIDEVELYLKRAKMALKFM*
Ga0118733_10131224723300010430Marine SedimentMGLSDDQRDDAYKALRGAQDALEYLMKGVKGLDEPPSLQAKIEEVELYLKRAKMALKFI*
Ga0118733_10371754623300010430Marine SedimentMGLSDDQRDDALKALRGAEEALEYLVKGVKGLEEASSLRARIEELELYLKRAKMALKFI*
Ga0118733_10612199623300010430Marine SedimentMSLTDDQRDGALKALRGAEEALEYVVSGVRGSEEAATLRSRIEEVEMYLNKAKSELKFM*
Ga0118733_10657408213300010430Marine SedimentMGLTDDQRDEALKSLRGAEETLEYVISGVKGLEEASTLRSRIEELELYL
Ga0118733_10713264113300010430Marine SedimentDQRDEAYKALRGAQDALEYLMKGVKGLDEPPSLQTKIEEVELYLKRAKMALKFI*
Ga0137333_100569123300011413SoilMGLSDDQRDEALKALRGAQETLEYLIKGVRGVDEAATLRERIDEVELYLKRVKMALKFI*
Ga0137436_101475233300011423SoilMGLTDDQRDEAMKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0137455_100998413300011429SoilMGLTDDQRDEAMKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYL
Ga0137455_101526923300011429SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVDEAATLRERIDEIELYLKRAKMALKFI*
Ga0137426_105456623300011435SoilMGLTDDQRDDALKALRGAQEAMEYLMKGVKGLNEDNTLRDRIDEVELYLKRAKMALKFI*
Ga0137432_115280723300011439SoilMGLSDDQRDDALKALRGAQDTLEYLIKGVRGVEEAATLRERIDEVELYLKRVKMALKFI*
Ga0137354_105234313300012143SoilMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAK
Ga0137349_107971923300012160SoilMGLTDDQRDDALKALRGAQDTLEYLIKGVKGVEEAATLRERIDEIELYLKRAKMALKFI*
Ga0157293_1025727823300012898SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELY
Ga0157306_1033616023300012912SoilTTMGLTDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI*
Ga0164313_1007162023300013101Marine SedimentMGLSDDQRDEALKALRGAAEALEYTMKGVKGLDEAATLRGRIEEVELYLKRAKMALKFM*
Ga0157375_1058372623300013308Miscanthus RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGDEEAATLRERIDEIELYLKRAKMALKFI*
Ga0075346_113675213300014306Natural And Restored WetlandsMGLTDDQRDEALKALRGAQEQLEYLMRGVKGVDEAATLRGRIDELELYLKRAKMALKFI*
Ga0180078_100255133300014865SoilMGLSDDQRDEALKALRGAQDTLEYLIKGVRGVEEAATLRERIDEVELYLKRVKMALKFI*
Ga0180083_101871533300014875SoilMGLTDDQRDEAMKALRGAQEALEYLMKGVKGVDEASSLRGRIDEIELYLKRAKSALKFI*
Ga0173483_1010947523300015077SoilQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI*
Ga0187775_1029766523300017939Tropical PeatlandMGLTDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI
Ga0187776_1016008023300017966Tropical PeatlandMGLIDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI
Ga0184615_1013614233300018059Groundwater SedimentVTMGLTDDQRDEAMKALRGAQEALEYLMKGVKGVDEASSLRGRIDEIELYLKRAKSALKF
Ga0184637_1017289533300018063Groundwater SedimentMGLSDDQRDDALKALRGAQEALESLMKGVKGVEEASTLRGRIDEIELYLKRAKMALKFI
Ga0184628_1017254623300018083Groundwater SedimentMGLTDDQRDEAMKALRGAQEAMEYLMKGVKGVDEASTLRGRIEEVELYLKRAKMALKFI
Ga0184629_1000111533300018084Groundwater SedimentMGLSDDQRDEALKALRGAQDTLEYLIKGVRGVEEAATLRERIDEVELYLKRVKMALKFI
Ga0173479_1000087533300019362SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI
Ga0224496_1005606423300022204SedimentMGLTDDQRDEALKALRGAQEQLEYLMRGVKGVDEASTLRGRIDELELYLKRVKMALKFI
Ga0224514_1021141113300022217SedimentMGLTDDQRDEALKAVRGAEEAMEYLAKGLKGLEEASSLRGRIEEVELYLKRVKMALKFI
Ga0224512_1004074623300022226SedimentMGLSDDQRDDALKALRGVEEALEYLVKGVKGLEESATLRSRIEELETYLKRAKMALDLM
Ga0212127_1015497313300022550Hot Spring SedimentMGLSDDQRDEAMKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV
Ga0247792_101707423300022880SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVDEAATLRERIDEIELYLKRAKMALKFI
Ga0247797_104071723300023057SoilMGLTDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI
Ga0247800_102100533300023263SoilMGLSDDQRDEALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI
(restricted) Ga0255049_1044717423300024517SeawaterMGLSDDQRDEAVKALRGAEEALEYLIKGVRGLEEPPALQGRIEELELYLKRAKMALKF
(restricted) Ga0255047_1027123213300024520SeawaterMVFKTLLTQIGGGLDMGLSDDQRDEAVKALRGAEEALEYLIKGVRGLEEPPALQGRIEELELYLKRAKMALKFV
Ga0210061_106187523300025537Natural And Restored WetlandsMGLTDDQRDEALKALKGAQQTMDYLIRGVKGVEEASTLRERIDEIELYLKRAKMALKFI
Ga0210131_107394223300025551Natural And Restored WetlandsMGLSDDQRDEALKALKGAQEAMDYLIRGVKGVDEASTLRGRIDEVELYLKRAKTALKFI
Ga0210076_101029423300025567Natural And Restored WetlandsMGLTDDQRDDALKALRGAQEALEYAIRGLKGVDEAATLRDRIDELELYLKRAKMALKFI
Ga0207704_1099434313300025938Miscanthus RhizosphereMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRQRIDEIELYLKRAKTALKFI
Ga0210081_101253313300025970Natural And Restored WetlandsMGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKFI
Ga0207676_1190686213300026095Switchgrass RhizosphereSSGRSTMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAATLRQRIDEVELYLKRAKMALKFI
Ga0208685_101369123300027513SoilMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAKSALKFI
Ga0208185_111748313300027533SoilHADANGSQEGVCGMGLTDDQRDEALKALRGAQEAMEYLVKGVRGLDEANTLRDRIDEVELYLKRAKSALKFI
Ga0209819_1001718733300027722Freshwater SedimentMGLTDDQRDDALKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALKFI
Ga0209819_1015445723300027722Freshwater SedimentMGLSDDQRDEALKALRGAQEAMEYLVKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI
Ga0209797_1009688023300027831Wetland SedimentMGLTDDQRDEALKALRGAQDTLEYLVKGVRGVEEAATLRERIDEIELYLKRAKMALKFI
(restricted) Ga0255054_1051863423300027856SeawaterMSLTDDQRDGAIKALRGAEEALEYVMSGVRGSEEAATLRSRIEEVEMYLNKAKSELKFM
Ga0209450_1032441523300027885Freshwater Lake SedimentMGLSDDQRDDALKALRGAEDVLESLIKGVRGLEEASTLRARIDELEVYIKRVKMALKFV
Ga0209486_1036775523300027886Agricultural SoilMGLTDDQRDDALKALRGAQDTLEYLIKGVRGVEEAATLRERIDEIELYLKRAKMALKFI
Ga0209253_1009096823300027900Freshwater Lake SedimentMSLTDDQRDAALKALRGAEDALQYAMSGVKGGEEAATLRNRIEEVESYLVRAKKELKFV
(restricted) Ga0233417_1060959213300028043SedimentMGLTDDQRDDALKALRGAQETLEYLIRGLKGVEEASTLRERIDEVELYLKRARM
Ga0307281_1001474923300028803SoilMGLSDDQRDDALKALRGAQDTLEYLIKGVRGVEEAATLRQRIDEIELYLKRAKMALKFI
Ga0307424_103383223300031511Salt MarshMGLTDDQRDDALKALRGAQETLDYLIRGVKGVDEAATLRDRIDELELYIKRAKMALKFI
Ga0310888_1025365323300031538SoilMGLSDDQRDEAAKAIRSAQEAMEYLYKGVKGLDEASTLRGRIEEVELYLKRAKMALKFI
Ga0315291_1032859333300031707SedimentSDDQRDDALKALRGAEDVLESLIKGVRGLEEAPTLRARIEELEVYVKRVKMALKFV
Ga0310813_1155001023300031716SoilMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVDEAATLRQRIEEIELYLKRAKMALKFI
Ga0315288_1024752423300031772SedimentMGLSDDQRDDALKALRGAEDVMESLIKGVRGLEEASTLRARIDELEVYIKRVKMALKFV
Ga0315288_1113739713300031772SedimentMGLSDDQRDDALKALRGAEDVMESLIKGVRGLEEASTLRARIEELEVYIKRVKTALKFV
Ga0310892_1023474533300031858SoilALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI
Ga0310893_1010447413300031892SoilSGRSTMGLSDDQRDEAAKALRAAQETMDYLIRGVKGVEEAGTLRERIDEIELYLKRAKMALKFI
Ga0315278_1015418923300031997SedimentMGLSDDQRDDALKALRGAEDVLESLIKGVRGLEEAPTLRARIEELEVYVKRVKMALKFV
Ga0315284_1207756523300032053SedimentWNMGLSDDQRDDALKALRGAEDVLESLIKGVRGLEEAPTLRARIEELEVYVKRVKMALKF
Ga0315910_10000272253300032144SoilMGLSDDQRDEALKALKGAQDTMDYLIRGVKGVEEAATLRSRIEEIELYLKRAKMALKFI
Ga0315910_1051928223300032144SoilMGLTDDQRDEAAKALRAAQETMDYLIRGVKGVDEAATLRERIDEIELYLKRAKMALKFI
Ga0315912_1116157623300032157SoilMGLTDDQRDEALKALRGAQDTLEYLMKGVKGVEEAATLRERIDEIELYLKRAKMALKFI
Ga0307471_10205307523300032180Hardwood Forest SoilMGLTDDQRDEALKALRGAQESMEYLYKGLKGLEESNTLRDRVDEVELYLKRVKMALKFI
Ga0307472_10112690913300032205Hardwood Forest SoilMGLTDDQRDEAAKALRAAQETMDYLIRGVKGVEEASTLRNRIDEIELYLKRAKMALKFI
Ga0316187_1033536823300032231Worm BurrowMLTDDQRDEALKAVKGAEEAMEYLAKGLKGMEEASTLRGRIEEVELYLKRAKMALKFI
Ga0315286_1106407723300032342SedimentMGLSDDQRDDALKALREAEDVMESLIKGVRGLEEASTLRARIEELEVYIKRVKMALKFV
Ga0315286_1143039923300032342SedimentMGLSDDQRDDALKALRGAEDVLESLIKGVRGLEEAPTLRARIEELEVYVKRVKMALK
Ga0315287_1217347323300032397SedimentMGLSDDQRDDALKALRGAEDVLESLIKGVRGLEEAPTLRARIEELEVYVKRV
Ga0316619_1115810223300033414SoilMALSDDQRDEALKALRGAQEALDYLMRGVKGVEEESTLRGRIDEIELYLKRAKMALKFI
Ga0316622_10146355723300033416SoilMALSDDQRDEALKALRGAQEALDYLMRGVKGVEEASTLRGRIDEIELYLKRAKMALKFI
Ga0364945_0113550_359_5383300034115SedimentMGLSDDQRDDALKALRGAQETLEYLIKGVRGVEEAATLRERIDELELYLKRAKMALKFI
Ga0364945_0274033_187_3663300034115SedimentMGLTDDQRDEAMKALRGAQEAMEYLMKGVKGLDEANTLRDRIDEVELYLKRAKMALRFI
Ga0370498_097539_229_4083300034155Untreated Peat SoilMGLSDDQRDEAMKALRSAHEALEYLMKGVKGVDEASSLRGRIDEVELYLKRAKMALKFI
Ga0364943_0270166_216_3953300034354SedimentMGLTDDQRDDALKALRGAQEALEYAMKGLKAVDEAATLRDRIEEVELYLKRAKMALKFI
Ga0373950_0100227_480_6233300034818Rhizosphere SoilKALRAAQETMDYLIRGVKGVEEAATLRERIDEIELYLKRAKMALKFI


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