Metagenome / Metatranscriptome Family F093056

Overview

Basic Information

• Family ID: F093056
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 48 residues
• Representative Sequence: MTYKRYEYWSKEGKVWTDWFPWNSDIRPELQMDDRRIFCRLKNEYKDV
• Number of Associated Samples: 37
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 17.92 %
• % of genes near scaffold ends (potentially truncated): 21.70 %
• % of genes from short scaffolds (< 2000 bps): 70.75 %
• Associated GOLD sequencing projects: 33
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (67.925 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (85.849 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (53.774 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 36.84%
  Coil/Unstructured: 63.16%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01569	PAP2	4.72
PF13392	HNH_3	1.89
PF13645	YkuD_2	0.94
PF13597	NRDD	0.94
PF13730	HTH_36	0.94
PF04851	ResIII	0.94
PF00075	RNase_H	0.94
PF01797	Y1_Tnp	0.94
PF07453	NUMOD1	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
All Organisms	root	All Organisms	32.08 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
cellular organisms	root	All Organisms → cellular organisms	24.53 %
Viruses	superkingdom	All Organisms → Viruses	7.55 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	13.21 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	11.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	11.32 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	11.32 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	11.32 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	11.32 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	11.32 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	10.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobrevibacter	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	11.32 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	9.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Bacteroidaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	0.94 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
unclassified Methanobrevibacter	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter	11.32 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	8.49 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Bacteroidaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	0.94 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobrevibacter sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	11.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
unclassified Prevotella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella	1.89 %
Bacteroidaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	0.94 %

Level 12

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.92 %
Methanobrevibacter sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	11.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Prevotella sp. tc2-28	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tc2-28	1.89 %
Bacteroidaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300009871|Ga0130077_13405258	Not Available	884
3300009871|Ga0130077_13980982	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1748
3300012983|Ga0123349_10557310	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	801
3300012991|Ga0157148_1047161	Not Available	750
3300014057|Ga0120384_1003909	All Organisms → cellular organisms → Bacteria	10091
3300014057|Ga0120384_1217775	Not Available	643
3300021254|Ga0223824_10342425	Not Available	1288
3300021256|Ga0223826_10042048	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	4321
3300021399|Ga0224415_10036885	Not Available	4520
3300021426|Ga0224482_10240485	Not Available	1587
3300021431|Ga0224423_10412073	Not Available	1228
3300021431|Ga0224423_10625094	Not Available	917
3300021540|Ga0214517_108227	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	898
3300024337|Ga0255060_10301865	Not Available	791
3300024337|Ga0255060_10379147	Not Available	705
3300024342|Ga0255061_10023620	All Organisms → Viruses → Predicted Viral	2664
3300024342|Ga0255061_10708314	Not Available	528
3300024345|Ga0255062_10000215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	11966
3300024345|Ga0255062_10055020	Not Available	1722
3300024345|Ga0255062_10062127	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1637
3300024345|Ga0255062_10490700	Not Available	597
3300024486|Ga0255059_10465695	Not Available	592
3300026525|Ga0256870_1009789	Not Available	4087
3300026526|Ga0256869_1005580	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	6666
3300026539|Ga0256872_10152499	Not Available	1089
3300028048|Ga0256405_10038011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tc2-28	4248
3300028591|Ga0247611_10001948	Not Available	35163
3300028591|Ga0247611_10392655	Not Available	1495
3300028591|Ga0247611_11820546	Not Available	575
3300028805|Ga0247608_10183855	All Organisms → Viruses → Predicted Viral	2037
3300028832|Ga0265298_10000217	Not Available	89426
3300028833|Ga0247610_10056029	All Organisms → Viruses → Predicted Viral	3855
3300028833|Ga0247610_10100744	Not Available	2878
3300028833|Ga0247610_10132074	Not Available	2521
3300028833|Ga0247610_10133015	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	2512
3300028833|Ga0247610_10720018	All Organisms → Viruses → Predicted Viral	1031
3300028886|Ga0256407_10622346	Not Available	786
3300028887|Ga0265299_10321824	Not Available	1309
3300028887|Ga0265299_10932415	Not Available	726
3300028888|Ga0247609_10021989	All Organisms → Viruses	5816
3300028888|Ga0247609_10460303	Not Available	1348
3300028888|Ga0247609_11063360	Not Available	828
3300028888|Ga0247609_11123903	Not Available	799
3300028888|Ga0247609_11472677	Not Available	670
3300028914|Ga0265300_10000274	Not Available	54765
3300031085|Ga0061018_13405258	Not Available	884
3300031085|Ga0061018_13980982	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1748
3300031760|Ga0326513_10068364	Not Available	2820
3300031760|Ga0326513_10297912	Not Available	1426
3300031760|Ga0326513_10322068	Not Available	1372
3300031760|Ga0326513_10622645	Not Available	972
3300031760|Ga0326513_11069710	Not Available	710
3300031760|Ga0326513_11338811	Not Available	619
3300031760|Ga0326513_11843669	Not Available	503
3300031853|Ga0326514_10003235	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	10360
3300031853|Ga0326514_10062168	Not Available	2855
3300031853|Ga0326514_10148399	Not Available	1950
3300031853|Ga0326514_10357173	Not Available	1284
3300031853|Ga0326514_10373165	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1256
3300031853|Ga0326514_10422371	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1178
3300031853|Ga0326514_10427014	All Organisms → Viruses → Predicted Viral	1171
3300031853|Ga0326514_10483487	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1097
3300031853|Ga0326514_10557116	Not Available	1016
3300031853|Ga0326514_10890925	Not Available	776
3300031853|Ga0326514_11015319	Not Available	717
3300031853|Ga0326514_11155125	Not Available	662
3300031853|Ga0326514_11258759	Not Available	627
3300031867|Ga0326511_10022016	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	5190
3300031867|Ga0326511_10039754	All Organisms → cellular organisms → Bacteria	3980
3300031867|Ga0326511_10050145	Not Available	3586
3300031867|Ga0326511_10057012	Not Available	3385
3300031867|Ga0326511_10163980	All Organisms → Viruses → Predicted Viral	2095
3300031867|Ga0326511_10491707	Not Available	1221
3300031867|Ga0326511_10631774	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1065
3300031867|Ga0326511_10927232	Not Available	854
3300031867|Ga0326511_10998470	Not Available	816
3300031867|Ga0326511_11063341	Not Available	785
3300031867|Ga0326511_11109099	Not Available	765
3300031867|Ga0326511_11271667	Not Available	702
3300031867|Ga0326511_11345207	Not Available	677
3300031867|Ga0326511_11351662	Not Available	675
3300031867|Ga0326511_11879086	Not Available	543
3300031961|Ga0326510_1304650	Not Available	508
3300031992|Ga0310694_10831190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	916
3300031993|Ga0310696_12337133	Not Available	513
3300031994|Ga0310691_12032605	Not Available	537
3300031998|Ga0310786_11341676	Not Available	761
3300031998|Ga0310786_12406395	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	522
3300032038|Ga0326512_10011135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	6499
3300032038|Ga0326512_10021662	Not Available	4745
3300032038|Ga0326512_10034794	Not Available	3773
3300032038|Ga0326512_10041900	All Organisms → Viruses → Predicted Viral	3462
3300032038|Ga0326512_10096755	Not Available	2319
3300032038|Ga0326512_10134471	Not Available	1970
3300032038|Ga0326512_10170439	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1745
3300032038|Ga0326512_10223759	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1513
3300032038|Ga0326512_10253027	Not Available	1417
3300032038|Ga0326512_10310339	Not Available	1267
3300032038|Ga0326512_10348661	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1186
3300032038|Ga0326512_10463168	Not Available	1007
3300032038|Ga0326512_10583680	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tc2-28	876
3300032038|Ga0326512_10596702	Not Available	865
3300032038|Ga0326512_10678672	Not Available	797
3300032038|Ga0326512_10705396	Not Available	778
3300032038|Ga0326512_10855179	Not Available	687
3300033463|Ga0310690_10007250	All Organisms → cellular organisms → Bacteria	14339

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Type

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	97.17%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	1.89%
Oral Cavity	Host-Associated → Mammals → Digestive System → Oral Cavity	0.94%

Subtype

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	95.28%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	1.89%
Unclassified	Host-Associated → Mammals → Digestive System → Foregut → Unclassified	1.89%
Unclassified	Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	85.85%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	5.66%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	1.89%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	1.89%
Fungi-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen	1.89%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	0.94%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	0.94%
Pig Oral Cavity	Host-Associated → Mammals → Digestive System → Oral Cavity → Unclassified → Pig Oral Cavity	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300009871	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672	Host-Associated
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated
3300012991	Pig viral communities from oral cavity of healthy adult pig - Individual 0	Host-Associated
3300014057	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208	Host-Associated
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300021540	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin	Host-Associated
3300024337	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024342	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated
3300026525	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome)	Host-Associated
3300026526	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome)	Host-Associated
3300026539	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome)	Host-Associated
3300028048	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02	Host-Associated
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated
3300028832	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01	Host-Associated
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated
3300028887	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02	Host-Associated
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated
3300028914	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03	Host-Associated
3300031085	Coassembly of Cow X and Y Rumen Fluid	Host-Associated
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated
3300031961	Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518 (Metagenome Metatranscriptome)	Host-Associated
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated
3300031993	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)	Host-Associated
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated
3300031998	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2)	Host-Associated
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0130077_134052582	3300009871	Rumen	MTYKRYEYWSKEGKKFTKWFPWKSNWKPELQMNDKRIICRLFNEYKEDESICTDN*
Ga0130077_139809824	3300009871	Rumen	MIYKRYEYWSNEGKKWTKWFEWNSDYKPELQLDDRRIFCRLKNEYK*
Ga0123349_105573102	3300012983	Fecal	MILKRYEYWSKEGKKWTDWFKWNSDYRPEFQLTDRRIISRLRNEYREDN*
Ga0157148_10471611	3300012991	Pig Oral Cavity	MKKRYQYWSKDGLVWTKWFDWNSDYMPELQKDDRRTFCRLKNEYSEV*
Ga0120384_100390928	3300014057	Sheep Rumen	MIYKRYEYWSKEGKKFTDWFPWDSDIKPEFQMTDRRVISRLKNEYKEVN*
Ga0120384_12177753	3300014057	Sheep Rumen	YEYWSKEGKKFTDWFKWNSDYKPELQMNDRRIFCKLKNEYKNESIYSNCR*
Ga0223824_103424252	3300021254	Cattle And Sheep Rumen	MIYKRYEYWSNEGKKFTDWFIWDSDLRPELQMSDRRIISRLFNEYKEI
Ga0223826_100420484	3300021256	Cattle And Sheep Rumen	MIYKRYEYWSNEGKKFTDWFIWDSDLRPELQMNDRRIISRLFNEYKDV
Ga0224415_100368851	3300021399	Cattle And Sheep Rumen	MLYKRYEYWSKEGKKWTNWFLWDSNLKPELQMEDKRIFCRLKNEYKEI
Ga0224482_102404851	3300021426	Cattle And Sheep Rumen	MTYKRYEYWTAFGKKWTKWFPWNSDYKPELQIDNHRIFSRLKNEYKSI
Ga0224423_104120732	3300021431	Cattle And Sheep Rumen	MTYKRYEYWSKKGKVWTDWFKWDSDYRPELQMDDKRIFCRLRNEYKVVSDQPSD
Ga0224423_106250944	3300021431	Cattle And Sheep Rumen	MTYKRYEYWTASGKKWTKWFPWNSEYKPEFQIDDHRIF
Ga0214517_1082272	3300021540	Goat Feces	MEVNINNMIYKRYEYLSSKGKVWTKWFKWNSDLRPELQMDDRRIINRLKNEYKEV
Ga0255060_103018651	3300024337	Rumen	KRYQYWSKDGLKWTDWFDWDSDYMPELQMDDRRVFCRLKNEYKDV
Ga0255060_103791471	3300024337	Rumen	MKKRYQYWSKDGLKWTDWFDWNSDFMPELQMDDRRIFCRLKNEYKED
Ga0255061_100236207	3300024342	Rumen	MIYKRYQYWSSEGLVWTEWFEWDSSLRPELQLDDRRIFCRLKNEYKEV
Ga0255061_107083142	3300024342	Rumen	ILFGSTMQKRYQYWSKDGLKWTDWFDWDSDFMPELQMDDRRIFCRLKNEYRED
Ga0255062_100002153	3300024345	Rumen	MIYKRYEYWSNEGKKWTKWFKWNSNLKPEFQMEDRRIFCRLKNEYKDEKDLCTNC
Ga0255062_100550205	3300024345	Rumen	MTYKRYEYWSNKGKILTDWFPWDSDWKPDLQIDDRRIFCRLKNEYKDEKGLCTNS
Ga0255062_100621273	3300024345	Rumen	MTYKRYEYWTASGKQWTKWFPWNSDYKPELQIDDRRIFCRLKNEYKDI
Ga0255062_104907002	3300024345	Rumen	MTYKRYEYWSSKGKVWTNWFEWDTDLKPELQMDDKRIFCRLKNEYK
Ga0255059_104656952	3300024486	Rumen	MKKRFEYWSKEGKVWTDWFDWDTNWKPELQLDDRRVFCRLKNEYKDEKGLYTNC
Ga0256870_10097895	3300026525	Rumen	MTLKRYEYWSKEGKVWTDWFPWNCDLKPELQMDDRRIFCRLKNEYKDV
Ga0256869_100558017	3300026526	Rumen	MIYKRYEYWSKEGKVWTNWFNWNSDLKPELQMDDKRVFCKLKNEYK
Ga0256872_101524992	3300026539	Rumen	MIYKRYEYWSREGKKFTDWFKWNSDYKPELQMNDKRIFCRLKNEYKNESIYSNCR
Ga0256405_1003801111	3300028048	Rumen	MMIYKRYEYWSSEGKKLTEWFEWDTDYKPELQLTDRRIISRLKNEYKDEKDLC
Ga0247611_1000194854	3300028591	Rumen	MIYKRYEYWSKEGKKFTDWFKWNSDYKPEFQMNDKRIFCRLKNEYENEKSVRSNC
Ga0247611_103926556	3300028591	Rumen	MIYKRYEYWSKEGKKFTDWFPWDSEWKPELQMDDRRIFCRLRNEYKVVSDQPSD
Ga0247611_118205462	3300028591	Rumen	LKWTDWFDWDSDYMPELQMDDRRVFCRLKNEYRDV
Ga0247608_101838557	3300028805	Rumen	YWSKDGLKWTDWFDWDTDFMPELQMDDRRIFCRLKNEYKED
Ga0265298_10000217110	3300028832	Rumen	MMTYKRYEYWTNEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYREL
Ga0247610_100560294	3300028833	Rumen	MIYKRYEYWSSKGKVWTNWFPWNSDYKPELQMDDRRIINRLYNEYKEI
Ga0247610_1010074410	3300028833	Rumen	MMTYKRYEYWTSSGKQWSKWFPWNSDYKPELQMDDRRIFCRLKNEYK
Ga0247610_101320744	3300028833	Rumen	MTYKRFEYWSNKGKIWTDWFPWNSDWKPEFQMEDRRIINRLKNEYRDENSCFNN
Ga0247610_101330157	3300028833	Rumen	MLLYIQTIMTLKRYQYWTDEGKVWTNWFKWDSDLKPELQLTDRRINSRLFNEYKEV
Ga0247610_107200183	3300028833	Rumen	MIYKRYEYWSSKGKVWTEWFSWNSDYKPELQMDDRRIINRLYNEYKEK
Ga0256407_106223462	3300028886	Rumen	MTYKRYEYWSKEGKVWTDWFPWNSDIKPELQMDDRRIFCRLRNEYKEI
Ga0265299_103218242	3300028887	Rumen	MTYKRYEYWSKEGKVWTDWFPWNCNLKPELQMDDRRIFCRLKNEYKDV
Ga0265299_109324153	3300028887	Rumen	MTYKRYEYWSKEGKVWTDWFPWNSDIRPELQMDDRRIFCRLRNEYKDV
Ga0247609_1002198910	3300028888	Rumen	MKKRYQYWSKDGLKWTDWFDWDSDYMPELQMDDRRVFCRLKNEYKDV
Ga0247609_104603034	3300028888	Rumen	MTYKRYQYWSSEGLVWTEWFEWDSDLKPELQLDDRRIFCRLKNEYKDEKDLRTSS
Ga0247609_110633603	3300028888	Rumen	MIYKRYEYWSSEGKKWTDWFEWDSDYKPELQMNDKRIFCRLKNEYKDEKSLCTNC
Ga0247609_111239033	3300028888	Rumen	RYQYWTDEGKVWTNWFKWDSDLKPELQLTDRRINSRLFNEYKEV
Ga0247609_114726772	3300028888	Rumen	MQKRYQYWSKDGLKWTDWFDWDTDFMPELQMDDRRIFCRLKNEYKED
Ga0265300_1000027484	3300028914	Rumen	MTYKRYEYWSSKGKVWTDWFLWNSDYKPELQMNDRRIINRLRNEYEERN
Ga0061018_134052582	3300031085	Fungi-Associated Bovine Rumen	MTYKRYEYWSKEGKKFTKWFPWKSNWKPELQMNDKRIICRLFNEYKEDESICTDN
Ga0061018_139809824	3300031085	Fungi-Associated Bovine Rumen	MIYKRYEYWSNEGKKWTKWFEWNSDYKPELQLDDRRIFCRLKNEYK
Ga0326513_100683643	3300031760	Rumen	MTYKRYEYWTATGKQWTKWFPWNSDYKPEFQMDDHRIFCRLRNEYKDI
Ga0326513_102979122	3300031760	Rumen	MKKRYQYWSREGLKWTEWFDWDSDYMPELQMDDRRVFCRLKNEYKDD
Ga0326513_103220684	3300031760	Rumen	MIYKRYEYWSSEGKKWTEWFEWDSDLRPELQLTDRRIFSRLKNEYKEL
Ga0326513_106226452	3300031760	Rumen	MTYKRYEYWSKEGKVWTKWFPWNCDLKPELQMDDRRIFCRLKNEYKDV
Ga0326513_110697103	3300031760	Rumen	MKKRFEYWSKEGKVWTDWFDWDSDLRPELQMDDRRIFCRLKNEYKDEKNLRSNS
Ga0326513_113388113	3300031760	Rumen	MTYKRYQYWSSEGLVWTEWFEWDSDLRPELQLDDRRIFCRLKNEYKEI
Ga0326513_118436692	3300031760	Rumen	MTYKRYEYWSKEGKKFTKWFLWKSDWKPELQMNDKR
Ga0326514_100032353	3300031853	Rumen	MIYKRYEYWSREGKKWTDWFKWDSDIKPELQMTDRRIISRLKNEYKENN
Ga0326514_100621688	3300031853	Rumen	MKKRYQYWSREGLKWTDWFDWDSDYMPELQMDDRRVFCRLKNEYKDD
Ga0326514_101483998	3300031853	Rumen	MMIYKRYEYWSNEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYKEL
Ga0326514_103571734	3300031853	Rumen	MIYKRYQYWSSEGKKWTDWFKWNSDLKPELQMDDRRIINRLYNEYKVVYDQPA
Ga0326514_103731652	3300031853	Rumen	MILKRYEYWSKEGKKWTDWFKWESDLKPEFQMDDKRIFCRLKNEYKEK
Ga0326514_104223713	3300031853	Rumen	MTYKRYEYWTSSGKQWSKWFPWNSDYKPELQMDDHRIFCRLKNEYKSI
Ga0326514_104270144	3300031853	Rumen	MIMQKRYQYWSKDGLVWTDWFDWDTDYMPEYQMEDRRIFCRLKNEYRDESKVC
Ga0326514_104834872	3300031853	Rumen	MKRYEYWSSKGKTWTDWFKWDSDYKPEFQINDKRIFCRLKNEYKDENIYTNS
Ga0326514_105571163	3300031853	Rumen	MVLKRYEYWSKEGKKWTDWFKWESDLKPELQMDDRRIFCRLRNEYKEN
Ga0326514_108909251	3300031853	Rumen	MTYKRYQYWSSEGKKWTDWFKWNSDLKPELQMDDRRIINRLYNEYKVVYDQPA
Ga0326514_110153193	3300031853	Rumen	MIYKRYEYWSREGKKWTNWFQWDSDLRPELQMNDKRIFCRLK
Ga0326514_111551252	3300031853	Rumen	MIYKRYEYWSSEGKKWTDWFEWNSDYKPELQMDDKRIFCRLRNEYKNEKSLCTNS
Ga0326514_112587591	3300031853	Rumen	MTYKRYEYWSSEGKKWTEWFEWDSDLRPELQLTDRRIISRL
Ga0326511_100220161	3300031867	Rumen	MTYKRYQYWSSEGKKWTDWFKWNSDLKPELQMDDRRIINRLYNEYKVVSDQPLIDR
Ga0326511_1003975411	3300031867	Rumen	MTLKRYEYWSKEGKKWTDWFPWESNLKPELQMDDRRVFCRLKNEYKEI
Ga0326511_100501455	3300031867	Rumen	MTYKRYEYWSKEGKVWTNWFPWNSDIKPELQMDDRRIFCRLKNEYKDVLE
Ga0326511_100570124	3300031867	Rumen	MTYKRYEYWAASGKKWTKWFPWNSEYKPEFQMDDHRIFCKLKNEYKNI
Ga0326511_101639806	3300031867	Rumen	MMIYKRYEYWSNEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYKDEKGLCTNS
Ga0326511_104917073	3300031867	Rumen	MMIYKRYEYWSSEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYKDEKGLRTNSR
Ga0326511_106317742	3300031867	Rumen	MVLKRYEYWSKEGKKWTDWFKWESSLKPEFQMDDRKIFCRLRNEYREEN
Ga0326511_109272322	3300031867	Rumen	MTYKRYEYWSKEGKVWTDWFPWNCDLKPELQMDDRRIFCRLKNEYKDV
Ga0326511_109984703	3300031867	Rumen	VEHLKQMLKRYEYWSKEGKKWTDWFEWDSDYCPELQLTDRRISSRLKNEYK
Ga0326511_110633412	3300031867	Rumen	MIYKRYEYWSSKGKVWTKWFSWDSDLRPELQLDDRRIFCKLKNEYREES
Ga0326511_111090993	3300031867	Rumen	RYEYWSSKGKVWTDWFDWNSDWKPEFQMNDKRVFCRLKNEYKEEL
Ga0326511_112716672	3300031867	Rumen	MTYKRYEYWTASGKQWTKWFLWNSDYKPELQMDDHRIFCRLKNEYKDI
Ga0326511_113452071	3300031867	Rumen	MKKRYQYWSREGLKWTDWFDWDSDYMPELQMDDRRVFCRLKNEYK
Ga0326511_113516622	3300031867	Rumen	GLKWTDWFDWDTDFMPELQMDDRRIFCRLKNEYKED
Ga0326511_118790862	3300031867	Rumen	MIYKRYEYWSREGKKWTNWFQWDSDLKPELQMNDKRIFCRLKNEY
Ga0326510_13046502	3300031961	Rumen	LLSCYQYWSKDGLKWTDWFDWDTDFKPELQMDDRRIFCRLKNEYKED
Ga0310694_108311902	3300031992	Rumen	MILKRYEYWSKEGKKWTDWFKWESNLKPEFQMDDKRIFCRLKNEYKVVSDQPS
Ga0310696_123371331	3300031993	Rumen	MTYKRYEYWSKEGKVWTDWFPWNSDIRPELQMDDRRIFCRLKNEYKDV
Ga0310691_120326052	3300031994	Rumen	MTYKRYEYWSKEGKVWSDWFPWDSDLRPELQMDDRRIFCRLRNEYREES
Ga0310786_113416763	3300031998	Rumen	SKEGKVWTNWFPWNSDLRPELQMDDRRIFCRLKNEYKDV
Ga0310786_124063953	3300031998	Rumen	EYWSKSGKTWTDWFPWDSDIRPELQLDDRRIFCRLKNEYKYESICTNS
Ga0326512_100111356	3300032038	Rumen	MILKRYEYWSKEGKKWTDWFKWESDLKPELQMDDRRIFCRLKNEYKEN
Ga0326512_1002166216	3300032038	Rumen	MIMTYKRYEYWSKEGKVWSDWFPWDSDLRPELQMDDRRIFCRLRNEYKDD
Ga0326512_100347947	3300032038	Rumen	MTLKRYEYWSKEGKKWTDWFPWESNLKPELQMDDRRIFCRLKNEYKEI
Ga0326512_1004190010	3300032038	Rumen	MTYKRYEYWSKEGKKFTYWFEWNSDLRPELQLTDRRIISRLKNEYKEL
Ga0326512_100967555	3300032038	Rumen	MTLKRYEYWSKEGKVWTDWFPWNCDLKPELQMDDRRIFCRLRNEYKDV
Ga0326512_101344714	3300032038	Rumen	MIYKRYEYWSNEGKKFTDWFIWDSDLRPELQMNDRRVINRLFNEYKEI
Ga0326512_101704395	3300032038	Rumen	MTYKRYEYWTASGKQWTKWFPWNSDYRPELQMDDHRIFCRLKNEYKDI
Ga0326512_102237594	3300032038	Rumen	MITFKRYEYWAKDGKKWTNWFEWKSDLKPEFQMDDKRIFCKLKNEYKDVLD
Ga0326512_102530271	3300032038	Rumen	MTYKRYEYWSREGKKWTDWFPWKSDIRPELQLTDRRIISRLYN
Ga0326512_103103396	3300032038	Rumen	MTYKRYEYWSSEGKKWTEWFEWDSDLRPELQLTDRRIISRLKNEYKEL
Ga0326512_103486615	3300032038	Rumen	KRYEYWSKEGKVWSDWFPWDSDLRPELQMDDRRIFCRLRNEYKDD
Ga0326512_104631682	3300032038	Rumen	MIYKRYEYWSKEGKVWTNWFPWNSDIKPELQMDDRRIFCRLKNEYKEI
Ga0326512_105836801	3300032038	Rumen	MIFKRYQYWSSKGLVWTTWFEWDSDYKPELQMDDRRIFCRLKNEYKVVSDQPLD
Ga0326512_105967022	3300032038	Rumen	MTYKRYEYWSNEGKKWTEWFEWNSDYKPEFQMNDRRIFCRLKNEYKDEKSLCTNR
Ga0326512_106786723	3300032038	Rumen	RYQYWSREGLKWTEWFDWDSDYMPELQMDDRRVFCRLKNEYKDD
Ga0326512_107053964	3300032038	Rumen	RYEYWSKEGKVWTDWFPWNCDLRPELQMDDRRIFCRLKNEYKDV
Ga0326512_108551793	3300032038	Rumen	MTYKRYQYWSSEGLVWTEWFEWDSDLRPELQLDDRRIFCRLKNEYK
Ga0310690_100072504	3300033463	Rumen	MIYKRYEYWSKEGKKWTDWFPWDSDLKPELQLSDRRIMSRLYNEYKNEDS