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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021505 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215252 | Ga0190327 |
| Sample Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-0-1_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 158973755 |
| Sequencing Scaffolds | 36 |
| Novel Protein Genes | 40 |
| Associated Families | 39 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2 |
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | N/A | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002164 | Metagenome / Metatranscriptome | 588 | Y |
| F002336 | Metagenome / Metatranscriptome | 569 | Y |
| F002344 | Metagenome / Metatranscriptome | 568 | Y |
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F004479 | Metagenome / Metatranscriptome | 436 | Y |
| F004520 | Metagenome / Metatranscriptome | 434 | Y |
| F009962 | Metagenome / Metatranscriptome | 310 | Y |
| F011096 | Metagenome / Metatranscriptome | 295 | Y |
| F011937 | Metagenome / Metatranscriptome | 285 | Y |
| F013419 | Metagenome | 271 | Y |
| F014622 | Metagenome / Metatranscriptome | 261 | N |
| F015742 | Metagenome / Metatranscriptome | 252 | Y |
| F017299 | Metagenome / Metatranscriptome | 241 | Y |
| F018541 | Metagenome / Metatranscriptome | 234 | Y |
| F018931 | Metagenome / Metatranscriptome | 232 | Y |
| F022458 | Metagenome / Metatranscriptome | 214 | Y |
| F024115 | Metagenome / Metatranscriptome | 207 | Y |
| F030400 | Metagenome | 185 | Y |
| F032332 | Metagenome | 180 | Y |
| F032719 | Metagenome / Metatranscriptome | 179 | Y |
| F034978 | Metagenome | 173 | Y |
| F036998 | Metagenome | 168 | N |
| F038301 | Metagenome / Metatranscriptome | 166 | N |
| F039402 | Metagenome / Metatranscriptome | 164 | Y |
| F039875 | Metagenome / Metatranscriptome | 163 | N |
| F040581 | Metagenome / Metatranscriptome | 161 | N |
| F044014 | Metagenome | 155 | Y |
| F046982 | Metagenome / Metatranscriptome | 150 | N |
| F049002 | Metagenome / Metatranscriptome | 147 | Y |
| F061355 | Metagenome / Metatranscriptome | 132 | Y |
| F061392 | Metagenome / Metatranscriptome | 132 | N |
| F067298 | Metagenome | 125 | Y |
| F070560 | Metagenome / Metatranscriptome | 123 | N |
| F074897 | Metagenome / Metatranscriptome | 119 | Y |
| F078539 | Metagenome | 116 | Y |
| F087903 | Metagenome / Metatranscriptome | 110 | Y |
| F093886 | Metagenome | 106 | Y |
| F104987 | Metagenome / Metatranscriptome | 100 | N |
| F105891 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190327_1000176 | Not Available | 10570 | Open in IMG/M |
| Ga0190327_1001995 | All Organisms → Viruses → Predicted Viral | 2639 | Open in IMG/M |
| Ga0190327_1002971 | Not Available | 2181 | Open in IMG/M |
| Ga0190327_1003440 | Not Available | 2030 | Open in IMG/M |
| Ga0190327_1008590 | All Organisms → Viruses → Predicted Viral | 1368 | Open in IMG/M |
| Ga0190327_1009686 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis | 1303 | Open in IMG/M |
| Ga0190327_1012507 | Not Available | 1167 | Open in IMG/M |
| Ga0190327_1013430 | Not Available | 1130 | Open in IMG/M |
| Ga0190327_1014419 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1096 | Open in IMG/M |
| Ga0190327_1014908 | Not Available | 1081 | Open in IMG/M |
| Ga0190327_1015734 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1055 | Open in IMG/M |
| Ga0190327_1016148 | All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | 1043 | Open in IMG/M |
| Ga0190327_1020320 | Not Available | 943 | Open in IMG/M |
| Ga0190327_1020713 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 935 | Open in IMG/M |
| Ga0190327_1021255 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 924 | Open in IMG/M |
| Ga0190327_1022632 | Not Available | 899 | Open in IMG/M |
| Ga0190327_1023341 | Not Available | 887 | Open in IMG/M |
| Ga0190327_1028416 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 813 | Open in IMG/M |
| Ga0190327_1030988 | Not Available | 781 | Open in IMG/M |
| Ga0190327_1032374 | Not Available | 766 | Open in IMG/M |
| Ga0190327_1034208 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 747 | Open in IMG/M |
| Ga0190327_1038519 | Not Available | 707 | Open in IMG/M |
| Ga0190327_1039428 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 700 | Open in IMG/M |
| Ga0190327_1041935 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 681 | Open in IMG/M |
| Ga0190327_1042158 | Not Available | 679 | Open in IMG/M |
| Ga0190327_1043646 | Not Available | 668 | Open in IMG/M |
| Ga0190327_1051178 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 621 | Open in IMG/M |
| Ga0190327_1054678 | Not Available | 602 | Open in IMG/M |
| Ga0190327_1056128 | Not Available | 594 | Open in IMG/M |
| Ga0190327_1064489 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 557 | Open in IMG/M |
| Ga0190327_1064674 | Not Available | 556 | Open in IMG/M |
| Ga0190327_1065582 | All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | 553 | Open in IMG/M |
| Ga0190327_1068380 | Not Available | 542 | Open in IMG/M |
| Ga0190327_1069721 | Not Available | 537 | Open in IMG/M |
| Ga0190327_1074681 | Not Available | 520 | Open in IMG/M |
| Ga0190327_1077009 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190327_1000176 | Ga0190327_10001765 | F067298 | MVVVIREEDAGKVVRALGLKRRIMELEREIAELQRRKAKLEEEYADLGISIE |
| Ga0190327_1001995 | Ga0190327_10019953 | F039402 | MSLVDYTDLEKEITDAPEPKILPRGAEVKARIVSVREGISDKNGARWYQPIFDVPDDPMVIEFNDFFWDLADRDKLDPKSAQRAIYKFKQFASAFGIDYSKPFSWTDDLVGLEGWLIVGVRKDDEYGDQNTVSKYVARR |
| Ga0190327_1002112 | Ga0190327_10021123 | F036998 | MAKWVSPILTDIRNQVGRSVVFSIWKGRGYFRQYVKPANPKTAKQRAHRDVMRQLVKRWQQIIDTPEKKAAWNTIGLLEGNITGYNVFTKYGRKSRISCPGSASVNDTITITYTLGLPAAVAMIVARKPDGSLEIVADAGTLEAGENKTVTYQVTSSGKYEFYIADSRVLVEGDTAPVEYQMITKWTPDEVNGVAKPAECEVS |
| Ga0190327_1002971 | Ga0190327_10029714 | F044014 | MSRDNYIPRFSFEITSEQKERADRLLETYGLRRALFSIILDDVLDLIEDYGGVAIGMIISGKIKPRKVLPSLHKVNFMEEKDG |
| Ga0190327_1003440 | Ga0190327_10034402 | F002336 | MPTVKTKNMTRVFPYNAVGKAQADSFAKMKKGKISYNPGYGMEKKTKSSY |
| Ga0190327_1006969 | Ga0190327_10069693 | F002344 | MLYDKLKPHIKAKMKENAEEYKSVNWLIDTIKTKDRYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0190327_1008590 | Ga0190327_10085905 | F030400 | MVVTNMKELCEYGKQKKLARKAQHVEIIKIYGECKGMGQRWYKSPQKSSFPKQYKAAFNKIWR |
| Ga0190327_1009686 | Ga0190327_10096861 | F104987 | MSKELKWGTIIPLIGGSAIGCKKSAGVDPAFHLSYEAFAANESHIEKYWPDVPMYRLDHEDLEIPNQTFNEVDYVNSVCPCAGLS |
| Ga0190327_1009882 | Ga0190327_10098822 | F002525 | VDSAWEQEKLEAKKLLENAAESHLSGARFVGRSLLRKI |
| Ga0190327_1012507 | Ga0190327_10125072 | F009962 | MSTLQFMGRGELVPRLIAQLGGNKEFAYALLKKRGDMDADGKLTAKGEKRNQMTAEERAFDRAGETPHTHTYNPETNRVEKN |
| Ga0190327_1013430 | Ga0190327_10134301 | F004479 | MHNSKILVGNSGDKVFLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDVKPLSETSYEMKRYSTWYDKILSQPMNTSLGQLESLISIIGKFDNIGSDVKTQDYFDKLQLRTGYTYEGKFDAVSAWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNPNEKYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYE |
| Ga0190327_1014419 | Ga0190327_10144192 | F061392 | MIVKRLSIICAVLILGPFITLQTFANELDEPDPTFKLAVTLFPIDGGQLYVGDVDRDKKTFRLHLRHIGKNSKWVYYYAGSGAFVNEDGDVEPDNAVASIEYPHYIASVIGNTFRKARVRILFSPRGDGKGFFKEAGHVIFQECATKTFEAKDWKCTGWEYLGTLPGF |
| Ga0190327_1014908 | Ga0190327_10149083 | F002164 | VRALVGMKEILKKRRCLSHRKYVTHRMAELSSEIFEDAIATGKVNLEKRKQLLKYKEHLKHL |
| Ga0190327_1015734 | Ga0190327_10157342 | F093886 | MKYWILILSASFLLIAAPDIRAHNLVAVNGNTQDHQHVYRRQQYGKPLQQGHRVQSAGGSGTIVWGSDARPEYGKSTVRRSGPIIDDQKPRPGAISNGSIKYGSAVNRYGKAVQGYGKPVRDYGKPDWNK |
| Ga0190327_1016148 | Ga0190327_10161481 | F032719 | IMDLTEHFVLSLYETLTDPVYNEEDIKKLDAILENHRSVIESYRDYQTFKKNFPKIHLMVDLKTYDQIIETFYPKMREKLFDLLTKAGLTEALINYDADTGKMQIKNAELMKCFEINGVDIVDSKIQGNIINCDIFSSELINSSILESNLFGSTDVADSKIEDSYVSKNVICKDSYVFGIRGVFSGEMEGGIFRKGRATKLARFENAEIIEIEKI |
| Ga0190327_1020320 | Ga0190327_10203201 | F015742 | SKKAYEQLKEEIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWHL |
| Ga0190327_1020713 | Ga0190327_10207131 | F049002 | MSKADLDKVQTQLTRAIQKDAPCTFEEEIPVLVTLDNGVIYKGFAFEVQPKSDNFPKGLVMVRTSNSDIGVPVRYISER |
| Ga0190327_1021255 | Ga0190327_10212553 | F046982 | MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKIIDSKWDPVNPLYQIRIIKFYDSMKFLKKHFFDMNFRHVFENRARKMILKAEDYKTAKVLEERLNEKDRERFYVI |
| Ga0190327_1022632 | Ga0190327_10226323 | F070560 | MLMTNQTQQFKQLVSSAKPETQIPKTESMVTVSSLMSTADQVQFGKGLSSIFVDVPHHTSGESQIFSVRPQQLVPRSAVIQRDESSQLVGISAVSGG |
| Ga0190327_1023341 | Ga0190327_10233413 | F004520 | MKLTNEEKDEITWRVVDSLYEKLANELEYELEEHNDFTETNDAYMDLFNEMTIKIVKYMRSELFQPMTNEDLK |
| Ga0190327_1028416 | Ga0190327_10284162 | F038301 | MVTNIAIALAISLTGQVETKLCNLKCTGHTKDVVIDNSKDITQNPKYMDGLESGYILLCNGEAEGFTNHNTGEISCDGSNHEGGDGNKGECYVCY |
| Ga0190327_1030988 | Ga0190327_10309881 | F013419 | MRESKYSFLYRNSDGHVMRPESFLNINKGRTLSSSQLRMLGIEKIKNPSYKRQATSIKRQASSSA |
| Ga0190327_1032374 | Ga0190327_10323742 | F018931 | MSGNIPIDNPIVRTYWIAYDNSLKKNVEGYGFVDPQQKLLSKWFIDETIDEAEWIAELAKHGIDPNPPEEEEGEE |
| Ga0190327_1034208 | Ga0190327_10342082 | F061355 | LRDKYDVSGLQSDRAISKAGATALKSAKEIKDGNRNRYLAILQDKAAMTDIDKAVKDSIELLNTHISDALNKGEMDQYGNFVIGKSPKGRSVSMKDGANAIRNMLDDYQRYKDYERQDKEARAEGREDNYYGRELKSYAKRITDYAKKVKDKNYGW |
| Ga0190327_1038519 | Ga0190327_10385192 | F078539 | NLFLKVNMVRPFTDRENFIVASVIMVVSDKMKSVSRETRTNILQYIRETKYPGVTDQDWKDIANGIDAHKKDVFSVMVKAFHESSSNPSVSSNKAFATLDTDMKAEIEDIDFDELKSIVDESDDPKLREYYLTMKQLKRDFDDDRKK |
| Ga0190327_1039428 | Ga0190327_10394282 | F074897 | MQFPQLDPQTRRIAEQLAREALVSAQVLSDELQQYVEELDSHSSTDEFFDRDVAKRITALCWKLLDALPAEADERQHRLTQLAINYFVLAEDAQDDNYSMAGFEDDLQVVTAVIHELDLSHLLEE |
| Ga0190327_1041935 | Ga0190327_10419352 | F011096 | FRWFFETYDYTWDDIVKATRMYVNEYRDADYLYMQTSQYFICKQDKHRVKHSTLADYCDMILEGINTEDEHFKENVV |
| Ga0190327_1042158 | Ga0190327_10421582 | F017299 | MNKFSHLKITLEYYNKKISTEIDHSDVSLEELHEMWLGIVKAMGYHEDTIKEF |
| Ga0190327_1043646 | Ga0190327_10436462 | F014622 | MXNKMIASAVYGFVAAILVLAITFMVIMLTSRFAKAGYGIMYGSLFIKMVTLSAFTLAVKPHLGDAIIYAAIVLISIMFSNVYLIIKIKQXEN |
| Ga0190327_1051178 | Ga0190327_10511781 | F024115 | GLNTWRQNAAEHGLDAAREGDRSAAERWVDRALRESKCQLHEARGYISSSTTRKYVRRPDYVETFVEKLYADGAPQIEICDSDALGFRFAHYLVVTLPDDSSNHERIIADAQSFVRRDAVVYRGVTSTEVEEIVRTSTLLGKRRVLVDLPAEAD |
| Ga0190327_1054678 | Ga0190327_10546781 | F039875 | KRNPNIEYWLLSPNDLGRVRAKEKPAVQSLFGPPVETESAAPSNVKEFHSTMADRKSSDEAAQIIKDLDLDFIFFYTGPSSTVNIPDYINKVDGTGRVKSLDFFKYYAAPIIKAMNELEKKVPIVGLLVDNRYILACKDWNDNNRPTYYLAQNTFTKTEEFFCNPPLRDIDTIESTYEYSGIETVFLLDKKRYDTDELFE |
| Ga0190327_1056128 | Ga0190327_10561282 | F011937 | MEDKKGGFFSEIKNQIVTGIGLVITAAFGLLIANMQSIFEPKEEKVEPPVMEQRINVPSNTKDTVIVTKTIVIPPKEEKKEEEISW |
| Ga0190327_1064489 | Ga0190327_10644893 | F087903 | KEWDNKSEEEQIEEILTEANAYNLRQEVKLTAEMFIKDDPDLNKALAYEMAYIEWIK |
| Ga0190327_1064674 | Ga0190327_10646742 | F034978 | MDEIVVRATKEQIREFKESILWQDIVNELLAWKEGFNREMHSIVDDAAAENPSTASVLLHMGDLNGRQKAVDYMISILDMFLSILESKEQENDSGRNETN |
| Ga0190327_1065582 | Ga0190327_10655821 | F032332 | MERGKGFSDEFIRSLLLTLEQTDFDQFMDLSYHVLMHSPSAVIKRRDSSNEKIKSIDNMIKFFEEKEEYEKCTNLQKLKLIIPLDEDDNE |
| Ga0190327_1067706 | Ga0190327_10677061 | F105891 | MANISTYPIGTPAQGDLIPGTQKYTNSSGKTENLTRNFTVANIAAFANSYSLGYTVYTALITQAGTAAPVATVLQNTTGGTIV |
| Ga0190327_1068380 | Ga0190327_10683802 | F040581 | MEFLEDGNYNGIKFMGNGNVYNGYLNQEQTWKEYRQWALKNIYDEEN |
| Ga0190327_1069721 | Ga0190327_10697211 | F022458 | TNMIDDWLNQNPDDGFNPNDHGIEMDEIAKLHAMSDMKEDQEIWAREQANKFYNDFESLNISDSILAVNSLIKTKVLSISQVNTMLDNMIDVFLLDEEYEKCHVCNEIKKGLKEC |
| Ga0190327_1074681 | Ga0190327_10746812 | F040581 | MEFLENGNFNGIKFLGKRRVYNGYLNKEQSWKEYQQWAEKNIY |
| Ga0190327_1077009 | Ga0190327_10770092 | F018541 | MDSPTMRSFWVDFPLNTEQYSKLNLKWRRRQNFYEIRNPQPELRIRNFCTFGGDDYMVISLEARGDINEYANALKVMDKWIVETLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |