Basic Information | |
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IMG/M Taxon OID | 3300021440 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131212 | Gp0238828 | Ga0213919 |
Sample Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 395725713 |
Sequencing Scaffolds | 44 |
Novel Protein Genes | 47 |
Associated Families | 41 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 31 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater biome → bayou → fresh water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9301 | Long. (o) | -83.5517 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001445 | Metagenome | 692 | Y |
F004010 | Metagenome / Metatranscriptome | 457 | Y |
F004727 | Metagenome / Metatranscriptome | 426 | Y |
F008723 | Metagenome / Metatranscriptome | 329 | Y |
F019483 | Metagenome / Metatranscriptome | 229 | Y |
F029893 | Metagenome / Metatranscriptome | 187 | Y |
F034114 | Metagenome / Metatranscriptome | 175 | Y |
F034978 | Metagenome | 173 | Y |
F035785 | Metagenome / Metatranscriptome | 171 | Y |
F037053 | Metagenome | 168 | Y |
F039427 | Metagenome / Metatranscriptome | 163 | Y |
F040533 | Metagenome / Metatranscriptome | 161 | Y |
F042742 | Metagenome / Metatranscriptome | 157 | Y |
F043727 | Metagenome | 155 | Y |
F044151 | Metagenome / Metatranscriptome | 155 | Y |
F050213 | Metagenome / Metatranscriptome | 145 | Y |
F051600 | Metagenome | 143 | Y |
F051611 | Metagenome | 143 | Y |
F052355 | Metagenome | 142 | Y |
F055453 | Metagenome | 138 | Y |
F055534 | Metagenome | 138 | Y |
F058120 | Metagenome / Metatranscriptome | 135 | Y |
F060093 | Metagenome | 133 | Y |
F061021 | Metagenome | 132 | Y |
F068878 | Metagenome / Metatranscriptome | 124 | Y |
F071209 | Metagenome / Metatranscriptome | 122 | Y |
F071942 | Metagenome / Metatranscriptome | 121 | Y |
F073235 | Metagenome / Metatranscriptome | 120 | Y |
F074429 | Metagenome | 119 | Y |
F077963 | Metagenome | 117 | N |
F078624 | Metagenome / Metatranscriptome | 116 | N |
F078676 | Metagenome / Metatranscriptome | 116 | Y |
F082643 | Metagenome / Metatranscriptome | 113 | Y |
F083890 | Metagenome / Metatranscriptome | 112 | Y |
F085177 | Metagenome / Metatranscriptome | 111 | Y |
F089950 | Metagenome / Metatranscriptome | 108 | Y |
F093488 | Metagenome / Metatranscriptome | 106 | Y |
F093782 | Metagenome / Metatranscriptome | 106 | Y |
F102209 | Metagenome | 101 | Y |
F102589 | Metagenome | 101 | Y |
F103371 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0213919_1000089 | Not Available | 48290 | Open in IMG/M |
Ga0213919_1000122 | All Organisms → cellular organisms → Bacteria | 41908 | Open in IMG/M |
Ga0213919_1000156 | Not Available | 36639 | Open in IMG/M |
Ga0213919_1000246 | Not Available | 26684 | Open in IMG/M |
Ga0213919_1000828 | Not Available | 12578 | Open in IMG/M |
Ga0213919_1000917 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 11676 | Open in IMG/M |
Ga0213919_1000966 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 11281 | Open in IMG/M |
Ga0213919_1001022 | Not Available | 10872 | Open in IMG/M |
Ga0213919_1001531 | Not Available | 8192 | Open in IMG/M |
Ga0213919_1002376 | Not Available | 5982 | Open in IMG/M |
Ga0213919_1003192 | Not Available | 4880 | Open in IMG/M |
Ga0213919_1004188 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4083 | Open in IMG/M |
Ga0213919_1004318 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli | 4004 | Open in IMG/M |
Ga0213919_1005868 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 3284 | Open in IMG/M |
Ga0213919_1007167 | Not Available | 2887 | Open in IMG/M |
Ga0213919_1007280 | All Organisms → cellular organisms → Bacteria | 2860 | Open in IMG/M |
Ga0213919_1008728 | Not Available | 2561 | Open in IMG/M |
Ga0213919_1014539 | Not Available | 1853 | Open in IMG/M |
Ga0213919_1015266 | Not Available | 1800 | Open in IMG/M |
Ga0213919_1015292 | Not Available | 1799 | Open in IMG/M |
Ga0213919_1016052 | All Organisms → Viruses → Predicted Viral | 1745 | Open in IMG/M |
Ga0213919_1017099 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum | 1678 | Open in IMG/M |
Ga0213919_1041791 | Not Available | 980 | Open in IMG/M |
Ga0213919_1043158 | Not Available | 961 | Open in IMG/M |
Ga0213919_1044445 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 945 | Open in IMG/M |
Ga0213919_1048784 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 895 | Open in IMG/M |
Ga0213919_1052663 | Not Available | 857 | Open in IMG/M |
Ga0213919_1059654 | Not Available | 798 | Open in IMG/M |
Ga0213919_1060951 | Not Available | 788 | Open in IMG/M |
Ga0213919_1068090 | Not Available | 740 | Open in IMG/M |
Ga0213919_1069202 | Not Available | 734 | Open in IMG/M |
Ga0213919_1071313 | Not Available | 722 | Open in IMG/M |
Ga0213919_1074239 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 706 | Open in IMG/M |
Ga0213919_1074484 | Not Available | 704 | Open in IMG/M |
Ga0213919_1084302 | Not Available | 659 | Open in IMG/M |
Ga0213919_1095933 | Not Available | 613 | Open in IMG/M |
Ga0213919_1103099 | Not Available | 590 | Open in IMG/M |
Ga0213919_1112196 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 565 | Open in IMG/M |
Ga0213919_1113992 | Not Available | 560 | Open in IMG/M |
Ga0213919_1114360 | Not Available | 559 | Open in IMG/M |
Ga0213919_1115220 | Not Available | 557 | Open in IMG/M |
Ga0213919_1119425 | Not Available | 547 | Open in IMG/M |
Ga0213919_1126598 | Not Available | 530 | Open in IMG/M |
Ga0213919_1140524 | Not Available | 503 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0213919_1000089 | Ga0213919_10000899 | F004727 | MKVTIEYHDTEALTVEEVVRQAIHNYGKNIKVQVMPESTIAYDLIYFGLQQLLTHEQLSLLYDSGAYQTEIKKLRSDVLFKIEEILDQVIIDNESKVA |
Ga0213919_1000122 | Ga0213919_10001226 | F085177 | MYGTINDYAVIVNNVLKHIAPKVAPRVRSEYLDFMFKVEDNQRIYSDTGVTGLGMAEIIPDGAVGVSDAPIQGFSKNYTQMHFTKKVRLTFQSNFFLFESPAAKIKGAVKNKVLEGKDAIEHAKNYLAQSLLAQGFGTSFTWVPINQVGTPTSISTVGADAVAYWSATHPSEDGGPTWSNVIVDVVPSPQFTYSSLLAARRQQSLKKDGRQMPLMSNLDTLVCRSGSITAQFAKTIKGTIDKGLAPQQTNLFNNAPATDTFKVVELGVYQNLGLDGLMWGMFDSNMMNQDYGFLYIEALATRAEPAVIDLLGNQDLVLNFNSLAVLGASDLRGWMWSAGNGTSAG |
Ga0213919_1000156 | Ga0213919_100015642 | F019483 | MANAIGTATINFGAHPGSNEASVAVTGQTGISATSKCEAWVMGDDSTADHTDNDHRYLPALAAFTCGTPTAGTGFTIYARSPHKMRGQYALRWVWSD |
Ga0213919_1000246 | Ga0213919_100024638 | F082643 | MNFPYNNLLVCTSQNTVALDANVQAVVNAINANLVIPYGDYGGPTVYYFQTQNSALGNLWYTMFDKVTNLGLASFSVRYGAATTIRQAILQPFPRTQIHLQFLILPAIPVASPMNGTVIP |
Ga0213919_1000828 | Ga0213919_100082821 | F089950 | MASYFTEGSKLSFNGFKGTIIKITETYRKNVIVLKVTEFPARNPFPGRKVEAIGIFEYPDGKLEFMSVID |
Ga0213919_1000917 | Ga0213919_100091710 | F058120 | MTKTVSATEFGENLLSVINSKDAQQSVTTVQQYKENIRDATVGADYVNWITEPVNLTRVHKALAEDLGVPPRAMIIKRMAMSRTQRAALLLQAMEGAVKRVHKL |
Ga0213919_1000966 | Ga0213919_100096613 | F078676 | MPIQIHGAATSMQNLTADLQYYVCYASSPGAFTDPNPDPPPSQEIPRLVNIQVTGSPLDKSQKNFEVFLMSIGLRAMPVVLSDPTPVLQLADYTLELSGEGFVWKFAVERGVQFYNFTPYGTPGPVGLLIDDLDGVIIPSGVRITTVTGSPSGWAQNVAFTRMESI |
Ga0213919_1001022 | Ga0213919_100102216 | F060093 | MANEAYVKTGTNLLFSGDAGADVAWSMEGISNGAGRVSAQRDLGASPRPGWYKWSCEVQWQATPTQGAGLELYASGAPDGDSTQIDGDVGATDAALGDVDMRRNLTYVGIVISENAAASEKCVASGVLFWPHRYISMVGYNAAGASTNATDSNFRFDFMPFSWQGQ |
Ga0213919_1001531 | Ga0213919_10015316 | F102589 | MCILYYYQPNRHHAVVVINNGMTPLKIAIFEEIRKHHDGASELDNEQLNKLLFHHPDGLRLSLKGFVVIKAIFTAYSFEIPATMKSRHNFGMSKMEYPYFLTKKRLILFSEMDAMVVKLHGGIEGFLETCSQID |
Ga0213919_1002376 | Ga0213919_10023766 | F074429 | MTSFNIDKAISRIAKPSVFDRIVKEIDAKEIPAKYVEQILVQYYDGNVVELRGNEITHPIPVNKNASWAAMAESFKKMRDVKIFINTEVLEIDINEQVEKYLGNHC |
Ga0213919_1003192 | Ga0213919_10031924 | F004010 | MALGKSVSKNIKELYADNKKSGKERGANGKPRSRAQIIAIAEFGSKTKIICSLKDRNL |
Ga0213919_1004188 | Ga0213919_10041883 | F019483 | MANAIGTAEIDFGAFPGSNDASVAVTGQTGISATSKAEAFVMADDTSTDGHTANDHRYFNMLSGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD |
Ga0213919_1004318 | Ga0213919_10043181 | F071209 | VDKNTYIPLNRLIEEKEKEWTFTRLNLPYHEIAKQGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFKIQFGLGPTT |
Ga0213919_1004318 | Ga0213919_10043187 | F055453 | MKMKELLNEGVTDVVARFYIEASKDCDRFFNPEDVKYKEKNAKFYEEYFKGWFEEGHVPVFTKPVDIPQPEYTNDPKEGKLQSPGYRGLQFALAAAGLPYNHNVQAYRSDPTKIIATQNMDGARNNNSN |
Ga0213919_1005868 | Ga0213919_10058681 | F044151 | MGLQVLGALYFLEPMLIELGLGTSFDEREHLASDEPNVKLTSPT |
Ga0213919_1007167 | Ga0213919_10071675 | F034114 | MPMILIETSVPAGGVNSNVVSGSAFEFARTRQLMSCGVVQSATGGFTTITSGPDIIAEEFSVPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTAGALTVRALVQTSAV |
Ga0213919_1007280 | Ga0213919_10072809 | F073235 | MCQFKSAIVVRDEASKGGFRLLMSPWTESHSELITIHKLRDNDRLTFARVEFSPSSMDNAYLVEEYKIRLDEERKPDWWTAEIEADVTERMRAYIKSIIVDGDVELLIGGQFVIAPNAKVHCAHSMVINAICGGTVSAICGGTVSEIRGGTVSAIRGGTVSAICGGT |
Ga0213919_1008728 | Ga0213919_10087282 | F029893 | MATMQDSVSVAANSISANVLSGLLYEFVDDGTMVTVSCTGSATGLRATFIAGVPIADDVAINLQNRFALIPDDVLLSTEVPGGRLILRARNTTAGALTFFWRVDL |
Ga0213919_1014539 | Ga0213919_10145394 | F035785 | MTTPTFGFAAEKARTMSEEEIMDAVWEAPENSIIEIAAEDPDSTVGDNDGIYLEVIKLDDEESVVRDRWPNQDNDRHIVSTSDVYAIYRALVDAVDAQEVA |
Ga0213919_1015266 | Ga0213919_10152662 | F077963 | MRVFKRLLDFFNIHPDKNQRWTLSTLFIVGLLYTYVSPAITKAWVTELPAEWLAFQSLTYSVVGLLIGMIWKGCVRRWAVKWFTVLCIIESAAGFFVGMWLCFIEYNVWVLAIACLLYGTLVSEFIGKCLMTFRPKLWNEKEREIYDNNNDVVCGIYCIVGYACSLMFMPSVKVAMFVWGLTCALDNIGWLVVYHKNKEKFRAIAGW |
Ga0213919_1015292 | Ga0213919_10152922 | F042742 | MQTDVLATVPITSSGAFTDQASNNLGAVRVKAIYIVPTGTAGSVILKDGGSGGTTRATINTVASATQPTYMLLPGEGILFRTSVYGTVSNVGYVTLFYA |
Ga0213919_1016052 | Ga0213919_10160524 | F083890 | MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG |
Ga0213919_1017099 | Ga0213919_10170994 | F050213 | MFQLLKSRTVQFALALAVLSILQGYVGLLPLNQVQQMFVGIAISVAITLLRIITTQPVSE |
Ga0213919_1020386 | Ga0213919_10203861 | F103371 | MSYDDWKTHNPADDCCEFCGADPRYCRGGWQPNSCTGECGKGWRDPDYEYEKMRDEA |
Ga0213919_1041791 | Ga0213919_10417911 | F068878 | MTEKTKKWSQENVDQLLAIVGAESPVSAASVESAAEQLGVSPRSVAAKLRQLDRDVASLAKEKVSAFSESEGVELAAFVNANPGAYTYKEIA |
Ga0213919_1043158 | Ga0213919_10431582 | F102209 | MKIPKIKDDESLAMWRERLAREFNLDYKMQELIREVSVTSYIRGTDVMLDTLKKEGKIRK |
Ga0213919_1044445 | Ga0213919_10444452 | F040533 | MSKIRISGDTSGLIDLQAPAVAGSNVLTLPAVTGTLAVDLSSNALTT |
Ga0213919_1048784 | Ga0213919_10487843 | F019483 | MANAIGTAEIDFGAFPGSNDASVTVTGQTTISATSKVESFVMADDTSTDGHTANDHRYFNMLAGLTCGTPTAGTGFTIYATSQQK |
Ga0213919_1052663 | Ga0213919_10526632 | F019483 | MATATGTAVINFGALPGTSEAQVTVTGQTTISATSKVECFVMGDDSTSDHNASDHRWLPQFASFVCGTPVAGSGFTIYARAKESLTGQFALRWVWAD |
Ga0213919_1059654 | Ga0213919_10596542 | F078624 | MNQYIYVRPRDDKQGWAVDVFDGRRAWSKTHLGEQPLNKSEAHRLAHKLRDPKFYTARAKRAVNSGGAL |
Ga0213919_1060951 | Ga0213919_10609512 | F019483 | MATGLGTATINFGAFPGSNEASVAVTGQGTISATSKAEAYIMADDTTSDHTASDHRYFAALVALTCGTPSAGTGFTIYARSMEKLQGTFALRWVWAD |
Ga0213919_1068090 | Ga0213919_10680902 | F043727 | MTNKEAIDRWAKFIIPAVFRAEDALKKAKPEWEERLKRLGEPGGEDPHKVAEEYCREIATIIVTQAADDSEDTEDQGATIV |
Ga0213919_1069202 | Ga0213919_10692021 | F083890 | VALTDKPKTDAQRQAERKARELAAGRVQFKRWVHPDDKAALAEYAAKLADDRAKK |
Ga0213919_1071313 | Ga0213919_10713131 | F029893 | MPTMQDSVSVAANSVSTNQLSGQLYEFVEEGTSVTVSCTGSATGLRTTFICGVPLVNDQAIGLQNRFPLIPDDIIMNGEVPGGRMVLTARNTTAGALTFFWRVDL |
Ga0213919_1074239 | Ga0213919_10742391 | F093488 | MDGVFYNDLREPFIGADIAAVTLATTAKALYPASNFPVLGGQYFARIGKALRIRLFGRITTALTPGNGTFDIYYGTGADANGTILASSAALALSASQTNLSWMAEVDVHCRSIGSAGTLFCTGYAMWNNAVLANTLQPMLIPASAPAVSSGVDLTAA |
Ga0213919_1074484 | Ga0213919_10744842 | F061021 | MASYETIGYNSPDGSIWGLTATDKIACYGKVPVVQRPYSSAVHATSALSSSTDFGATQLAWAQEVTNTLIGLGIWATV |
Ga0213919_1084302 | Ga0213919_10843021 | F052355 | MAPDDEPPVSDGSDVVGVTQRELLMEMREDIRALKSTVDAIARDQALGVERRANMQRSADSIYARLDRHDLDLADLRRWRDRADGAMVLARWALGASLISLVAVG |
Ga0213919_1095933 | Ga0213919_10959332 | F055534 | MRNHMNYEELEASRILDLARAGEDVPETVIVWAFLVLGDMQRIWNG |
Ga0213919_1103099 | Ga0213919_11030992 | F037053 | MKTKITVDQLIADLESRGLGWSLDHTGRLIECRIWKWPDVIGRYRPATVEPLAKMLSEAMYQIDWAKYPVKEK |
Ga0213919_1112196 | Ga0213919_11121961 | F001445 | MAMRIHFHFHFHALEKEMATHSSLLAWRIPGTEEPSGLPSMGSHS |
Ga0213919_1113992 | Ga0213919_11139921 | F034978 | STKDQIESFKDSILWSDLVRELNNWKEGFDREMKSIVGDAEDSNPSTASVLLHMGDLNGRQKAIDYVLGILDVFLDIKNAEIDEKKLDNES |
Ga0213919_1114360 | Ga0213919_11143601 | F071942 | MSKQAAKSDFRTPDLYFAAYLQTAGVELKRTDRENNRVYFVFDTSICNIEELKTAWFNNSGKVAAQPYANAIKNLKSICHMS |
Ga0213919_1115220 | Ga0213919_11152201 | F093782 | MSAVFANSQNQIAALKELYTDDKDYMKDLVYKENPFLALVPKNESPDGFAGKYIPVPLEYGTPQGRGHTFSNAQGQQTATSLASFFVFVISDYQLVTITN |
Ga0213919_1115935 | Ga0213919_11159351 | F008723 | YIMATTIQNFFSKATQRQFSRDFLFRVKQINLVGGFSFNGEDELVYARSAQFPARNIEDKEANYAGQTFHVPGKSSYPGSNAYKIEFYHDENVDLRTKFEGASRAVFNNETTLGQYGMPGPESTITLSVIDKQLNEVEVIELVGASIRDIDPIDHAIADGTGEVKTFGVTFAYHFYRDFSAGADN |
Ga0213919_1119425 | Ga0213919_11194252 | F051611 | MVKDKVTKDDLMKFNVGDQKVFTLPSWNLARSAQSYANQQKKATLGTPNQREFKAIVGDPDPDTGRCSVTITRLA |
Ga0213919_1126598 | Ga0213919_11265981 | F051600 | EKAMAPHSSTLAWKIPWAEEPGRLQCMGSLRVGHD |
Ga0213919_1140524 | Ga0213919_11405242 | F039427 | MSKKVFALVSGIVGGLQTIGVAVVTYTSPEYATAINSAIVIAGAAVIEICNLFVQPQK |
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