NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021440

3300021440: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG



Overview

Basic Information
IMG/M Taxon OID3300021440 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131212 | Gp0238828 | Ga0213919
Sample NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size395725713
Sequencing Scaffolds44
Novel Protein Genes47
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available31
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomebayoufresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)33.9301Long. (o)-83.5517Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001445Metagenome692Y
F004010Metagenome / Metatranscriptome457Y
F004727Metagenome / Metatranscriptome426Y
F008723Metagenome / Metatranscriptome329Y
F019483Metagenome / Metatranscriptome229Y
F029893Metagenome / Metatranscriptome187Y
F034114Metagenome / Metatranscriptome175Y
F034978Metagenome173Y
F035785Metagenome / Metatranscriptome171Y
F037053Metagenome168Y
F039427Metagenome / Metatranscriptome163Y
F040533Metagenome / Metatranscriptome161Y
F042742Metagenome / Metatranscriptome157Y
F043727Metagenome155Y
F044151Metagenome / Metatranscriptome155Y
F050213Metagenome / Metatranscriptome145Y
F051600Metagenome143Y
F051611Metagenome143Y
F052355Metagenome142Y
F055453Metagenome138Y
F055534Metagenome138Y
F058120Metagenome / Metatranscriptome135Y
F060093Metagenome133Y
F061021Metagenome132Y
F068878Metagenome / Metatranscriptome124Y
F071209Metagenome / Metatranscriptome122Y
F071942Metagenome / Metatranscriptome121Y
F073235Metagenome / Metatranscriptome120Y
F074429Metagenome119Y
F077963Metagenome117N
F078624Metagenome / Metatranscriptome116N
F078676Metagenome / Metatranscriptome116Y
F082643Metagenome / Metatranscriptome113Y
F083890Metagenome / Metatranscriptome112Y
F085177Metagenome / Metatranscriptome111Y
F089950Metagenome / Metatranscriptome108Y
F093488Metagenome / Metatranscriptome106Y
F093782Metagenome / Metatranscriptome106Y
F102209Metagenome101Y
F102589Metagenome101Y
F103371Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0213919_1000089Not Available48290Open in IMG/M
Ga0213919_1000122All Organisms → cellular organisms → Bacteria41908Open in IMG/M
Ga0213919_1000156Not Available36639Open in IMG/M
Ga0213919_1000246Not Available26684Open in IMG/M
Ga0213919_1000828Not Available12578Open in IMG/M
Ga0213919_1000917All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11676Open in IMG/M
Ga0213919_1000966All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11281Open in IMG/M
Ga0213919_1001022Not Available10872Open in IMG/M
Ga0213919_1001531Not Available8192Open in IMG/M
Ga0213919_1002376Not Available5982Open in IMG/M
Ga0213919_1003192Not Available4880Open in IMG/M
Ga0213919_1004188All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4083Open in IMG/M
Ga0213919_1004318All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli4004Open in IMG/M
Ga0213919_1005868All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae3284Open in IMG/M
Ga0213919_1007167Not Available2887Open in IMG/M
Ga0213919_1007280All Organisms → cellular organisms → Bacteria2860Open in IMG/M
Ga0213919_1008728Not Available2561Open in IMG/M
Ga0213919_1014539Not Available1853Open in IMG/M
Ga0213919_1015266Not Available1800Open in IMG/M
Ga0213919_1015292Not Available1799Open in IMG/M
Ga0213919_1016052All Organisms → Viruses → Predicted Viral1745Open in IMG/M
Ga0213919_1017099All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum1678Open in IMG/M
Ga0213919_1041791Not Available980Open in IMG/M
Ga0213919_1043158Not Available961Open in IMG/M
Ga0213919_1044445All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage945Open in IMG/M
Ga0213919_1048784All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage895Open in IMG/M
Ga0213919_1052663Not Available857Open in IMG/M
Ga0213919_1059654Not Available798Open in IMG/M
Ga0213919_1060951Not Available788Open in IMG/M
Ga0213919_1068090Not Available740Open in IMG/M
Ga0213919_1069202Not Available734Open in IMG/M
Ga0213919_1071313Not Available722Open in IMG/M
Ga0213919_1074239All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage706Open in IMG/M
Ga0213919_1074484Not Available704Open in IMG/M
Ga0213919_1084302Not Available659Open in IMG/M
Ga0213919_1095933Not Available613Open in IMG/M
Ga0213919_1103099Not Available590Open in IMG/M
Ga0213919_1112196All Organisms → cellular organisms → Eukaryota → Opisthokonta565Open in IMG/M
Ga0213919_1113992Not Available560Open in IMG/M
Ga0213919_1114360Not Available559Open in IMG/M
Ga0213919_1115220Not Available557Open in IMG/M
Ga0213919_1119425Not Available547Open in IMG/M
Ga0213919_1126598Not Available530Open in IMG/M
Ga0213919_1140524Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0213919_1000089Ga0213919_10000899F004727MKVTIEYHDTEALTVEEVVRQAIHNYGKNIKVQVMPESTIAYDLIYFGLQQLLTHEQLSLLYDSGAYQTEIKKLRSDVLFKIEEILDQVIIDNESKVA
Ga0213919_1000122Ga0213919_10001226F085177MYGTINDYAVIVNNVLKHIAPKVAPRVRSEYLDFMFKVEDNQRIYSDTGVTGLGMAEIIPDGAVGVSDAPIQGFSKNYTQMHFTKKVRLTFQSNFFLFESPAAKIKGAVKNKVLEGKDAIEHAKNYLAQSLLAQGFGTSFTWVPINQVGTPTSISTVGADAVAYWSATHPSEDGGPTWSNVIVDVVPSPQFTYSSLLAARRQQSLKKDGRQMPLMSNLDTLVCRSGSITAQFAKTIKGTIDKGLAPQQTNLFNNAPATDTFKVVELGVYQNLGLDGLMWGMFDSNMMNQDYGFLYIEALATRAEPAVIDLLGNQDLVLNFNSLAVLGASDLRGWMWSAGNGTSAG
Ga0213919_1000156Ga0213919_100015642F019483MANAIGTATINFGAHPGSNEASVAVTGQTGISATSKCEAWVMGDDSTADHTDNDHRYLPALAAFTCGTPTAGTGFTIYARSPHKMRGQYALRWVWSD
Ga0213919_1000246Ga0213919_100024638F082643MNFPYNNLLVCTSQNTVALDANVQAVVNAINANLVIPYGDYGGPTVYYFQTQNSALGNLWYTMFDKVTNLGLASFSVRYGAATTIRQAILQPFPRTQIHLQFLILPAIPVASPMNGTVIP
Ga0213919_1000828Ga0213919_100082821F089950MASYFTEGSKLSFNGFKGTIIKITETYRKNVIVLKVTEFPARNPFPGRKVEAIGIFEYPDGKLEFMSVID
Ga0213919_1000917Ga0213919_100091710F058120MTKTVSATEFGENLLSVINSKDAQQSVTTVQQYKENIRDATVGADYVNWITEPVNLTRVHKALAEDLGVPPRAMIIKRMAMSRTQRAALLLQAMEGAVKRVHKL
Ga0213919_1000966Ga0213919_100096613F078676MPIQIHGAATSMQNLTADLQYYVCYASSPGAFTDPNPDPPPSQEIPRLVNIQVTGSPLDKSQKNFEVFLMSIGLRAMPVVLSDPTPVLQLADYTLELSGEGFVWKFAVERGVQFYNFTPYGTPGPVGLLIDDLDGVIIPSGVRITTVTGSPSGWAQNVAFTRMESI
Ga0213919_1001022Ga0213919_100102216F060093MANEAYVKTGTNLLFSGDAGADVAWSMEGISNGAGRVSAQRDLGASPRPGWYKWSCEVQWQATPTQGAGLELYASGAPDGDSTQIDGDVGATDAALGDVDMRRNLTYVGIVISENAAASEKCVASGVLFWPHRYISMVGYNAAGASTNATDSNFRFDFMPFSWQGQ
Ga0213919_1001531Ga0213919_10015316F102589MCILYYYQPNRHHAVVVINNGMTPLKIAIFEEIRKHHDGASELDNEQLNKLLFHHPDGLRLSLKGFVVIKAIFTAYSFEIPATMKSRHNFGMSKMEYPYFLTKKRLILFSEMDAMVVKLHGGIEGFLETCSQID
Ga0213919_1002376Ga0213919_10023766F074429MTSFNIDKAISRIAKPSVFDRIVKEIDAKEIPAKYVEQILVQYYDGNVVELRGNEITHPIPVNKNASWAAMAESFKKMRDVKIFINTEVLEIDINEQVEKYLGNHC
Ga0213919_1003192Ga0213919_10031924F004010MALGKSVSKNIKELYADNKKSGKERGANGKPRSRAQIIAIAEFGSKTKIICSLKDRNL
Ga0213919_1004188Ga0213919_10041883F019483MANAIGTAEIDFGAFPGSNDASVAVTGQTGISATSKAEAFVMADDTSTDGHTANDHRYFNMLSGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213919_1004318Ga0213919_10043181F071209VDKNTYIPLNRLIEEKEKEWTFTRLNLPYHEIAKQGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFKIQFGLGPTT
Ga0213919_1004318Ga0213919_10043187F055453MKMKELLNEGVTDVVARFYIEASKDCDRFFNPEDVKYKEKNAKFYEEYFKGWFEEGHVPVFTKPVDIPQPEYTNDPKEGKLQSPGYRGLQFALAAAGLPYNHNVQAYRSDPTKIIATQNMDGARNNNSN
Ga0213919_1005868Ga0213919_10058681F044151MGLQVLGALYFLEPMLIELGLGTSFDEREHLASDEPNVKLTSPT
Ga0213919_1007167Ga0213919_10071675F034114MPMILIETSVPAGGVNSNVVSGSAFEFARTRQLMSCGVVQSATGGFTTITSGPDIIAEEFSVPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTAGALTVRALVQTSAV
Ga0213919_1007280Ga0213919_10072809F073235MCQFKSAIVVRDEASKGGFRLLMSPWTESHSELITIHKLRDNDRLTFARVEFSPSSMDNAYLVEEYKIRLDEERKPDWWTAEIEADVTERMRAYIKSIIVDGDVELLIGGQFVIAPNAKVHCAHSMVINAICGGTVSAICGGTVSEIRGGTVSAIRGGTVSAICGGT
Ga0213919_1008728Ga0213919_10087282F029893MATMQDSVSVAANSISANVLSGLLYEFVDDGTMVTVSCTGSATGLRATFIAGVPIADDVAINLQNRFALIPDDVLLSTEVPGGRLILRARNTTAGALTFFWRVDL
Ga0213919_1014539Ga0213919_10145394F035785MTTPTFGFAAEKARTMSEEEIMDAVWEAPENSIIEIAAEDPDSTVGDNDGIYLEVIKLDDEESVVRDRWPNQDNDRHIVSTSDVYAIYRALVDAVDAQEVA
Ga0213919_1015266Ga0213919_10152662F077963MRVFKRLLDFFNIHPDKNQRWTLSTLFIVGLLYTYVSPAITKAWVTELPAEWLAFQSLTYSVVGLLIGMIWKGCVRRWAVKWFTVLCIIESAAGFFVGMWLCFIEYNVWVLAIACLLYGTLVSEFIGKCLMTFRPKLWNEKEREIYDNNNDVVCGIYCIVGYACSLMFMPSVKVAMFVWGLTCALDNIGWLVVYHKNKEKFRAIAGW
Ga0213919_1015292Ga0213919_10152922F042742MQTDVLATVPITSSGAFTDQASNNLGAVRVKAIYIVPTGTAGSVILKDGGSGGTTRATINTVASATQPTYMLLPGEGILFRTSVYGTVSNVGYVTLFYA
Ga0213919_1016052Ga0213919_10160524F083890MNAAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALTEYADKLARKRARAEQKAG
Ga0213919_1017099Ga0213919_10170994F050213MFQLLKSRTVQFALALAVLSILQGYVGLLPLNQVQQMFVGIAISVAITLLRIITTQPVSE
Ga0213919_1020386Ga0213919_10203861F103371MSYDDWKTHNPADDCCEFCGADPRYCRGGWQPNSCTGECGKGWRDPDYEYEKMRDEA
Ga0213919_1041791Ga0213919_10417911F068878MTEKTKKWSQENVDQLLAIVGAESPVSAASVESAAEQLGVSPRSVAAKLRQLDRDVASLAKEKVSAFSESEGVELAAFVNANPGAYTYKEIA
Ga0213919_1043158Ga0213919_10431582F102209MKIPKIKDDESLAMWRERLAREFNLDYKMQELIREVSVTSYIRGTDVMLDTLKKEGKIRK
Ga0213919_1044445Ga0213919_10444452F040533MSKIRISGDTSGLIDLQAPAVAGSNVLTLPAVTGTLAVDLSSNALTT
Ga0213919_1048784Ga0213919_10487843F019483MANAIGTAEIDFGAFPGSNDASVTVTGQTTISATSKVESFVMADDTSTDGHTANDHRYFNMLAGLTCGTPTAGTGFTIYATSQQK
Ga0213919_1052663Ga0213919_10526632F019483MATATGTAVINFGALPGTSEAQVTVTGQTTISATSKVECFVMGDDSTSDHNASDHRWLPQFASFVCGTPVAGSGFTIYARAKESLTGQFALRWVWAD
Ga0213919_1059654Ga0213919_10596542F078624MNQYIYVRPRDDKQGWAVDVFDGRRAWSKTHLGEQPLNKSEAHRLAHKLRDPKFYTARAKRAVNSGGAL
Ga0213919_1060951Ga0213919_10609512F019483MATGLGTATINFGAFPGSNEASVAVTGQGTISATSKAEAYIMADDTTSDHTASDHRYFAALVALTCGTPSAGTGFTIYARSMEKLQGTFALRWVWAD
Ga0213919_1068090Ga0213919_10680902F043727MTNKEAIDRWAKFIIPAVFRAEDALKKAKPEWEERLKRLGEPGGEDPHKVAEEYCREIATIIVTQAADDSEDTEDQGATIV
Ga0213919_1069202Ga0213919_10692021F083890VALTDKPKTDAQRQAERKARELAAGRVQFKRWVHPDDKAALAEYAAKLADDRAKK
Ga0213919_1071313Ga0213919_10713131F029893MPTMQDSVSVAANSVSTNQLSGQLYEFVEEGTSVTVSCTGSATGLRTTFICGVPLVNDQAIGLQNRFPLIPDDIIMNGEVPGGRMVLTARNTTAGALTFFWRVDL
Ga0213919_1074239Ga0213919_10742391F093488MDGVFYNDLREPFIGADIAAVTLATTAKALYPASNFPVLGGQYFARIGKALRIRLFGRITTALTPGNGTFDIYYGTGADANGTILASSAALALSASQTNLSWMAEVDVHCRSIGSAGTLFCTGYAMWNNAVLANTLQPMLIPASAPAVSSGVDLTAA
Ga0213919_1074484Ga0213919_10744842F061021MASYETIGYNSPDGSIWGLTATDKIACYGKVPVVQRPYSSAVHATSALSSSTDFGATQLAWAQEVTNTLIGLGIWATV
Ga0213919_1084302Ga0213919_10843021F052355MAPDDEPPVSDGSDVVGVTQRELLMEMREDIRALKSTVDAIARDQALGVERRANMQRSADSIYARLDRHDLDLADLRRWRDRADGAMVLARWALGASLISLVAVG
Ga0213919_1095933Ga0213919_10959332F055534MRNHMNYEELEASRILDLARAGEDVPETVIVWAFLVLGDMQRIWNG
Ga0213919_1103099Ga0213919_11030992F037053MKTKITVDQLIADLESRGLGWSLDHTGRLIECRIWKWPDVIGRYRPATVEPLAKMLSEAMYQIDWAKYPVKEK
Ga0213919_1112196Ga0213919_11121961F001445MAMRIHFHFHFHALEKEMATHSSLLAWRIPGTEEPSGLPSMGSHS
Ga0213919_1113992Ga0213919_11139921F034978STKDQIESFKDSILWSDLVRELNNWKEGFDREMKSIVGDAEDSNPSTASVLLHMGDLNGRQKAIDYVLGILDVFLDIKNAEIDEKKLDNES
Ga0213919_1114360Ga0213919_11143601F071942MSKQAAKSDFRTPDLYFAAYLQTAGVELKRTDRENNRVYFVFDTSICNIEELKTAWFNNSGKVAAQPYANAIKNLKSICHMS
Ga0213919_1115220Ga0213919_11152201F093782MSAVFANSQNQIAALKELYTDDKDYMKDLVYKENPFLALVPKNESPDGFAGKYIPVPLEYGTPQGRGHTFSNAQGQQTATSLASFFVFVISDYQLVTITN
Ga0213919_1115935Ga0213919_11159351F008723YIMATTIQNFFSKATQRQFSRDFLFRVKQINLVGGFSFNGEDELVYARSAQFPARNIEDKEANYAGQTFHVPGKSSYPGSNAYKIEFYHDENVDLRTKFEGASRAVFNNETTLGQYGMPGPESTITLSVIDKQLNEVEVIELVGASIRDIDPIDHAIADGTGEVKTFGVTFAYHFYRDFSAGADN
Ga0213919_1119425Ga0213919_11194252F051611MVKDKVTKDDLMKFNVGDQKVFTLPSWNLARSAQSYANQQKKATLGTPNQREFKAIVGDPDPDTGRCSVTITRLA
Ga0213919_1126598Ga0213919_11265981F051600EKAMAPHSSTLAWKIPWAEEPGRLQCMGSLRVGHD
Ga0213919_1140524Ga0213919_11405242F039427MSKKVFALVSGIVGGLQTIGVAVVTYTSPEYATAINSAIVIAGAAVIEICNLFVQPQK

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