Sample 3300020706

Basic Information
IMG/M Taxon OID	3300020706 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053531 \| Ga0214217
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020706 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053531 | Ga0214217

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 hypolimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	85831074
Sequencing Scaffolds	29
Novel Protein Genes	35
Associated Families	34

Dataset Contents

Total Genome Size

85831074

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis	1
Not Available	15
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → hypolimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004124	Metagenome / Metatranscriptome	452	Y
F010592	Metagenome	301	Y
F011648	Metagenome / Metatranscriptome	288	Y
F012318	Metagenome / Metatranscriptome	281	Y
F017289	Metagenome / Metatranscriptome	241	Y
F017467	Metagenome	240	Y
F017591	Metagenome	239	Y
F017967	Metagenome	237	Y
F024467	Metagenome	205	Y
F025228	Metagenome / Metatranscriptome	202	Y
F025431	Metagenome	201	N
F033290	Metagenome	177	Y
F036523	Metagenome	169	Y
F038050	Metagenome	166	Y
F042791	Metagenome	157	Y
F044899	Metagenome	153	N
F044986	Metagenome / Metatranscriptome	153	N
F045529	Metagenome	152	N
F061998	Metagenome / Metatranscriptome	131	Y
F068205	Metagenome	125	N
F072100	Metagenome / Metatranscriptome	121	Y
F076795	Metagenome	117	Y
F076852	Metagenome	117	N
F077999	Metagenome	117	Y
F078676	Metagenome / Metatranscriptome	116	Y
F083610	Metagenome	112	N
F083675	Metagenome	112	N
F083727	Metagenome	112	Y
F086796	Metagenome	110	Y
F088136	Metagenome	109	N
F091305	Metagenome	107	N
F095139	Metagenome	105	Y
F098526	Metagenome	103	N
F100244	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214217_1000375	All Organisms → cellular organisms → Bacteria → Proteobacteria	12995	Open in IMG/M
Ga0214217_1000464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis	10507	Open in IMG/M
Ga0214217_1000529	Not Available	9245	Open in IMG/M
Ga0214217_1002383	Not Available	2898	Open in IMG/M
Ga0214217_1003699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2159	Open in IMG/M
Ga0214217_1004293	Not Available	1955	Open in IMG/M
Ga0214217_1004334	All Organisms → Viruses → Predicted Viral	1944	Open in IMG/M
Ga0214217_1004652	Not Available	1850	Open in IMG/M
Ga0214217_1005953	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1557	Open in IMG/M
Ga0214217_1006032	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
Ga0214217_1012411	Not Available	959	Open in IMG/M
Ga0214217_1013479	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	911	Open in IMG/M
Ga0214217_1014363	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	873	Open in IMG/M
Ga0214217_1015369	Not Available	837	Open in IMG/M
Ga0214217_1015442	Not Available	835	Open in IMG/M
Ga0214217_1016215	Not Available	810	Open in IMG/M
Ga0214217_1016360	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata	806	Open in IMG/M
Ga0214217_1019466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	721	Open in IMG/M
Ga0214217_1020180	Not Available	707	Open in IMG/M
Ga0214217_1020324	Not Available	704	Open in IMG/M
Ga0214217_1020942	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	691	Open in IMG/M
Ga0214217_1025152	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	618	Open in IMG/M
Ga0214217_1025288	Not Available	616	Open in IMG/M
Ga0214217_1026425	Not Available	601	Open in IMG/M
Ga0214217_1027392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	588	Open in IMG/M
Ga0214217_1027929	Not Available	581	Open in IMG/M
Ga0214217_1028151	Not Available	578	Open in IMG/M
Ga0214217_1030202	Not Available	554	Open in IMG/M
Ga0214217_1032326	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	533	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214217_1000375	Ga0214217_100037510	F042791	MFSTAFQANAFQNNAFQVYVAPSTSHVGGDDAWYTAEELRRIQKIQQKIEARQRLLEKAIKDANASRKQSIRDLVSPVAKVKQSKVQLKQEVKADIPLAETEDLQRSISYLEAQRENILAAVAYREEFARLQTNLRILEAKRLEELDDEESVLLLLH
Ga0214217_1000464	Ga0214217_10004641	F100244	RKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSL
Ga0214217_1000529	Ga0214217_100052914	F011648	MCRVNRRTLMSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK
Ga0214217_1000529	Ga0214217_100052919	F017467	LKHEEYLVSWYIAVAKKRGWPEVVRLLAQNKETEDRMKMLIKKRLGK
Ga0214217_1002383	Ga0214217_10023834	F091305	MQAPASKRRYLNEVFLLVLDDLPTWRSMNTYAVDTEAQLKLLAAAEHPAIPATSSGPAFVAVPKLSKTLVSYIVGLMVTTPYFRGSCDERAKGLAEQHVTSTLASLNTLNGARYKTFLQETIGGWYSLFPEVRAAPRAGRASLDGEEGVDVEEPEEGEEGFIGGEVPVL
Ga0214217_1003434	Ga0214217_10034344	F076795	MVYAGFRDARRDIQDPPEAQSARASPDPHDEEYLEARPNQEEMEDAINKFLVQLEKQERNGFKDLASVLSQLPKPAQGSATSLSVADAIEAGFLPALDKDQANMFTPSELLLGYPRISRDNLHSTRISLDIPGYPWSPFRLVKSGDVHPRLSQVNLGWTSP
Ga0214217_1003699	Ga0214217_10036996	F017967	MAIKWYVKAPVSEYTAQDGTSKKRYQTVGIVTETKKGDLMLKLEMIPLLGLKEGSFWAYLNVPEDKAEGQKPTANLTDMESDIPF
Ga0214217_1004293	Ga0214217_10042932	F076852	MVDVDRLKKDGKTKYVKLLGKGILTLVDHLFWNLPFCSVKQSQAVRKKAGVTEEEWSTKWEEIVAEHDLPGALEQLASGWKEYLGKRAGEAARGAGAVRPACLSTVVLDTP
Ga0214217_1004334	Ga0214217_10043342	F098526	MAYSIFTAAETEAFFNSIPDVGVINRQTNPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPQELEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHNRILKAFIRNGFVDNSPETFNPNSGNMIKGLVRPCQPPKAKRATRAMLQQRLDTLLGVLHGNT
Ga0214217_1004487	Ga0214217_10044871	F095139	VAVQNQDKPKPKNNNIIVAWCDGGSVDGKFAEGLVYSILAGNVPIRSAMRVQGNQIGRQRQNAFDYWYDYTDFDWILWIDSDIVVTPEVLQKLWNEADPVARPVISGTYFISKENEQALMTPFPSLFSWTEDPYKLAYVHPLPVNSLVRVGAAGFGLVLMHRNAAKQMREKLGDTPFFNETGVGDKFVSEDINFFRLMREAEVPLYAHTGAVVQHMKRFSFDVDFYKLFWDNEERKNADRPVD
Ga0214217_1004652	Ga0214217_10046522	F045529	LHSWKGKFANFARPYFAHEITKRTELADAKVLSEELSLSSRPLGHQYDPDLHDAISHLRILDGSLPEHPKHGSSVNFFASEGTAKYWVKSSSPVFGYFFFYTLDMAVCPYLASIFGMPIWHPTNEAGVDELLKAGVKV
Ga0214217_1004652	Ga0214217_10046523	F044899	PPSARTVSGRKRVLNSDGNDIEASADGLFSEGGSLQEAGGGSPQTSDSAVKKRKVNRHGLVTLTNGVVSMRELGLSIAVPSKCRDDNALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAQPYSISEEMLNEILEADPEQRLPYLHGMSKSAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDM
Ga0214217_1005953	Ga0214217_10059532	F017591	MSTMIPDANALVAYIESFTGSSNSTEIKQCIFLAEMMMRNIELPALRTNPWTTIGVGNTYGQVPIPADMNRPILFFNNSNGASPQGGGAGPWLVYDRIGDRDMITELLDQQQYLTPYNIPEVYRGKFSEIGQYYEFLPVLGAGSIINMYYFTTWPLLFSLESDGITPVLNNVVLQSWPEGYIYGTLHNYYDKRKMADDAAVWLAKFNLAWDTVEDQNNKGKWSGGHNKLWSVFQPRKDQRFGTR
Ga0214217_1006032	Ga0214217_10060321	F004124	VRVWQDGRVKRKSSPSRPPRRHLTAKEKAEVLREHRRSGLSLLAFVRKHGLCYSTLLRWRSRPGQGALVVAPPDLEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR
Ga0214217_1009180	Ga0214217_10091801	F010592	LKLFSQYLHDKYDAPARKAVSEWVQMKWNVECKDNPNKYGVDLIVCRSGVPIGALEVEVRQEGFDQFGSIHKAQRKDKLTLGNLPVLFFALTHDLHRAYWAKVSSLENCPLIEVPNKYVAKGELFYDCPIKLFKIAELTDLF
Ga0214217_1012411	Ga0214217_10124111	F088136	MCELLVGCLGKIDQEAIGAAMESVTLDGSTRLGRRRAIALKKRGPFSNFWHCVGQHNLS
Ga0214217_1013479	Ga0214217_10134791	F086796	MNDYCEPYLNIQKLIKKYHNAQLKGKAELATKIAHEIADESIKLEIASIKQLRNHWVNSG
Ga0214217_1014363	Ga0214217_10143631	F044986	MSLASNKILVSNVATNAASGYFQAYAAGNATVVMPAGIYYIAPTANVTIELNTDTDGNISNASWAVVVANNTGGLFIADGYNVRANVLSGTPTITLFATNGGQPVSGTYNK
Ga0214217_1015369	Ga0214217_10153691	F038050	YFATIGFFMTPFIISYAFWYIIGAGISASWDLANWTMNLKIVLTVWAGCFAILMLLKLDDELHT
Ga0214217_1015442	Ga0214217_10154421	F036523	NNMTYNYGSPITGTLTGTTAVVNVPNVVYPASLVLNSSNGSRAIQFSFDGGVTYYAAVTPTYTETSQIVYVLNFPVTTVKFTGAAADTYRIL
Ga0214217_1016215	Ga0214217_10162152	F024467	MAIFNKQNIDINIDLTVLADKLAKDPAFIAAISKEVRNQMTKDVRWMGNLFAKWASTNPPAPT
Ga0214217_1016360	Ga0214217_10163601	F083675	TINKELKTKKKERSQPIVDANDVAKVLLALVFVLDGLAQPELNRFNGLQARPRDRVRDPFRPIIRAIQGYLRAYHVYRAEALTVREIKQLDTMSRDALEGLQRVFPYGVTYTNGAFRSFFCCEKPHSMTHWADNYATVGRIRTMSTQVTESRYKSSVKTKARKTNNQASFGGSLLQNNMEVEAAIELARHLDETGLHRVRTGFDQTWSGLVGLYHSNRPVWVCTKFSPSSCYVRVVCTKFVLSSAINPPFFWGKRRVDKSANLVQTFV
Ga0214217_1019466	Ga0214217_10194661	F083727	MHGQQTMKYLNDKAVADAMLIKHQKDQIDPVFAKAAEEAIAARVKNITE
Ga0214217_1020180	Ga0214217_10201802	F012318	MAYNSAFAPFGPTYLVGSSAAVQVKSSNNVYPSGYRIVNITSSLIRVSWQPQEPNDGTSTPVVTAPALTVPSYNTFYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA
Ga0214217_1020324	Ga0214217_10203241	F072100	MDVWFFPTSNVLLNTFLRSIVVILTMLFGFKTSWYAAYWGAIIHDTISLVLIRDL
Ga0214217_1020942	Ga0214217_10209421	F017591	DSSKDTNLMSNLLPINTGDDLVQYVLQFTGSNNTTEIQQCVYLTEMMLRNIELPALRTNPWTTIGTANQYGQVPIPADMNRPILFFNQGSGGTSPNANGAGPWIVYDRIGDRDIITETLNQNLYLAPWNTPQVYRGKFSEVGQYYEFLPTLSAGAQINMYYFTTWPLLFTIDNNNNQVQTNVVLSSFPEGYVYGTLHNYYLKRKMAEDAANWRAKFDDAMNTVEDQNNK
Ga0214217_1025152	Ga0214217_10251522	F025228	MGAPNSTVDQNLLPVQAYFDVYGNFQTFIGQGKAFIATINPIQSGL
Ga0214217_1025288	Ga0214217_10252882	F025431	NSYTPTGDHVWTDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTEQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSTTGSYPDQQGLISTNMVVESISHDFQAEPGFWHTSFILDPYPIRS
Ga0214217_1026425	Ga0214217_10264252	F083610	MNWNNLSSIAQVLAVFVFPVIFFVGRIVWKKVKSELSPNHGSSLRDAVDRIEKAVFEIIDEQKKNKKAIKRVAKELETHLNDLEYE
Ga0214217_1027392	Ga0214217_10273921	F017289	MCWCNPSKGTRMKTKEEIKEEIIELYGATQALSEAMNFLHAQRMEKSKQMMALNHMLKEMEDKDD
Ga0214217_1027392	Ga0214217_10273922	F033290	MTKEEIIEMANQAKLPHDYVDGGLMWLDKLEQFAKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRAREQE
Ga0214217_1027929	Ga0214217_10279291	F078676	MPIRIHGAATSMQNLTADLQYYVCYASSPGAFTNPNPNPPQSQELARLVNIQVTGNPLDESQKNFEVFLMSIGLRAMPVVLSDPFAVLELRDYTLELSGEGFIWKFAVERGVQFFNFTPYGTPGPVGLLVDDLNGVIIPSGVRITTVTGSPSGWGKNVA
Ga0214217_1028151	Ga0214217_10281512	F061998	MSGIEKGITAFLGGLIVIALASTLVGKGKQTPQVINATGGAISSSLHAAQGL
Ga0214217_1030202	Ga0214217_10302022	F068205	GRFGNLLLGYSGSFRVGAMYFKVAGRSHNPTLEQLLESVKLPDDLKDDWELLAIEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSL
Ga0214217_1032326	Ga0214217_10323261	F077999	MAAFDVKAKEEPDTRSEEECFPVVEHGTEVAGDRVLVQLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020706: Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences